Wall clock time and date at job start Tue Mar 31 2020 16:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46814 * 2 1 4 4 C 1.37790 * 120.10408 * 264.99750 * 3 2 1 5 5 C 1.38796 * 120.66235 * 179.97438 * 4 3 2 6 6 C 1.36655 * 120.52691 * 0.02562 * 5 4 3 7 7 C 1.39590 * 119.76765 * 359.97438 * 6 5 4 8 8 C 1.46486 * 134.03579 * 179.97438 * 7 6 5 9 9 C 1.50703 * 126.50220 * 0.02562 * 8 7 6 10 10 C 1.50696 * 109.46867 * 85.00185 * 9 8 7 11 11 O 1.21281 * 120.00228 * 0.02562 * 10 9 8 12 12 N 1.34785 * 119.99792 * 179.97438 * 10 9 8 13 13 C 1.47576 * 134.49390 * 179.97438 * 12 10 9 14 14 C 1.53946 * 86.11846 * 155.36116 * 13 12 10 15 15 O 1.42894 * 113.74258 * 269.15648 * 14 13 12 16 16 C 1.50696 * 113.73834 * 137.95019 * 14 13 12 17 17 H 1.07999 * 120.00319 * 1.93267 * 16 14 13 18 18 C 1.37885 * 119.99717 * 181.92651 * 16 14 13 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47805 * 134.45494 * 359.87006 * 12 10 9 25 25 C 1.34236 * 106.99817 * 180.28110 * 8 7 6 26 26 N 1.36830 * 109.94103 * 359.57151 * 25 8 7 27 27 H 0.96998 * 125.07114 * 180.18815 * 26 25 8 28 28 C 1.37699 * 109.87075 * 0.44242 * 26 25 8 29 29 H 1.09004 * 109.46902 * 300.00212 * 1 2 3 30 30 H 1.08994 * 109.47301 * 60.00456 * 1 2 3 31 31 H 1.09004 * 109.46819 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47078 * 239.99743 * 2 1 3 33 33 H 1.09003 * 109.46768 * 119.99575 * 2 1 3 34 34 H 1.08001 * 119.67102 * 359.95829 * 4 3 2 35 35 H 1.07997 * 119.73367 * 180.02562 * 5 4 3 36 36 H 1.08004 * 120.11552 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.47165 * 325.00262 * 9 8 7 38 38 H 1.08996 * 109.47154 * 205.00254 * 9 8 7 39 39 H 1.08999 * 113.76805 * 41.06190 * 13 12 10 40 40 H 1.09001 * 113.77518 * 269.66882 * 13 12 10 41 41 H 0.96701 * 113.99575 * 178.07128 * 15 14 13 42 42 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 43 43 H 1.09008 * 113.77106 * 90.37414 * 24 12 10 44 44 H 1.08997 * 113.84172 * 318.91386 * 24 12 10 45 45 H 1.08009 * 125.02797 * 179.73538 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3606 2.0378 -1.1875 5 6 2.8238 3.3462 -1.2010 6 6 2.9627 4.0454 -0.0352 7 6 2.6359 3.4398 1.1793 8 6 2.6623 3.8800 2.5762 9 6 3.0936 5.2326 3.0820 10 6 1.9313 6.1892 3.0115 11 8 0.8583 5.8099 2.5923 12 7 2.0840 7.4660 3.4152 13 6 1.1950 8.6418 3.4856 14 6 2.1322 9.1532 4.5948 15 8 1.7399 8.7531 5.9093 16 6 2.4422 10.6247 4.4964 17 1 1.9912 11.2206 3.7168 18 6 3.3015 11.2101 5.4019 19 7 3.5717 12.4944 5.3164 20 14 4.0819 10.1791 6.7500 21 1 3.2075 10.1896 7.9502 22 1 4.2493 8.7833 6.2716 23 1 5.4096 10.7450 7.1000 24 6 3.2092 8.2497 3.9669 25 6 2.2348 2.8482 3.3210 26 7 1.9277 1.7863 2.5146 27 1 1.5959 0.9290 2.8242 28 6 2.1653 2.1140 1.1984 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2568 1.4979 -2.1171 35 1 3.0764 3.8153 -2.1404 36 1 3.3241 5.0630 -0.0534 37 1 3.9106 5.6074 2.4655 38 1 3.4292 5.1441 4.1152 39 1 0.1880 8.4110 3.8332 40 1 1.2050 9.2550 2.5845 41 1 2.3423 9.0475 6.6061 42 1 4.1759 12.9063 5.9537 43 1 3.8121 8.7475 3.2073 44 1 3.8078 7.7065 4.6981 45 1 2.1440 2.8561 4.3972 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191953617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:15 Heat of formation + Delta-G solvation = -7.779450 kcal Electronic energy + Delta-G solvation = -27421.271544 eV Core-core repulsion = 23597.673909 eV Total energy + Delta-G solvation = -3823.597635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.30362 -41.23627 -39.20897 -38.08200 -36.15551 -35.32745 -34.52402 -33.35651 -30.92878 -30.14973 -29.83413 -28.37312 -27.06389 -26.61711 -24.82387 -22.78548 -22.53606 -22.08742 -20.52424 -19.62921 -19.25321 -18.69776 -18.07060 -17.99818 -17.26565 -16.57742 -16.52702 -16.23328 -15.56062 -15.52550 -15.44021 -15.25384 -14.94034 -14.81780 -14.45639 -14.31009 -14.15053 -13.85675 -13.66461 -13.54454 -13.45420 -12.98279 -12.91651 -12.76265 -12.61490 -12.41525 -12.35635 -12.28681 -11.90111 -11.82970 -11.52301 -11.40171 -11.06629 -10.83454 -10.49915 -10.25155 -9.59313 -9.10241 -8.49141 -8.39749 -6.52790 0.20257 0.73208 1.28575 1.32210 1.44514 1.56905 1.72614 2.10503 2.21750 2.27622 2.80818 2.96301 3.28413 3.72689 3.77036 3.83420 3.89407 3.98802 4.10117 4.20999 4.30051 4.33971 4.42072 4.46620 4.46898 4.56668 4.61171 4.67943 4.69629 4.72299 4.82480 4.85371 4.93840 4.98862 5.00733 5.01654 5.15302 5.24552 5.32654 5.35252 5.65679 5.70215 5.78314 5.84185 6.07145 6.26607 6.54791 6.71568 6.72806 6.86802 7.15185 7.24127 8.75699 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026317 B = 0.002620 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.681858 B =10683.279411 C =10949.291315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.098 4.098 4 C -0.111 4.111 5 C -0.148 4.148 6 C -0.101 4.101 7 C -0.117 4.117 8 C -0.183 4.183 9 C -0.049 4.049 10 C 0.527 3.473 11 O -0.587 6.587 12 N -0.638 5.638 13 C 0.122 3.878 14 C 0.186 3.814 15 O -0.560 6.560 16 C -0.545 4.545 17 H 0.052 0.948 18 C 0.025 3.975 19 N -0.926 5.926 20 Si 0.920 3.080 21 H -0.259 1.259 22 H -0.221 1.221 23 H -0.283 1.283 24 C 0.078 3.922 25 C 0.071 3.929 26 N -0.582 5.582 27 H 0.428 0.572 28 C 0.084 3.916 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.357 0.643 42 H 0.273 0.727 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.531 -25.960 -6.557 26.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.100 4.100 4 C -0.130 4.130 5 C -0.167 4.167 6 C -0.119 4.119 7 C -0.122 4.122 8 C -0.191 4.191 9 C -0.089 4.089 10 C 0.319 3.681 11 O -0.468 6.468 12 N -0.372 5.372 13 C -0.001 4.001 14 C 0.145 3.855 15 O -0.372 6.372 16 C -0.582 4.582 17 H 0.070 0.930 18 C -0.176 4.176 19 N -0.564 5.564 20 Si 0.744 3.256 21 H -0.184 1.184 22 H -0.144 1.144 23 H -0.210 1.210 24 C -0.044 4.044 25 C -0.057 4.057 26 N -0.186 5.186 27 H 0.267 0.733 28 C -0.023 4.023 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.166 0.834 35 H 0.156 0.844 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.138 0.862 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.209 0.791 42 H 0.082 0.918 43 H 0.121 0.879 44 H 0.112 0.888 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.506 -26.608 -7.027 27.562 hybrid contribution 0.437 0.779 0.987 1.331 sum 1.943 -25.829 -6.041 26.598 Atomic orbital electron populations 1.21747 0.94712 1.02381 1.01453 1.20484 0.96003 0.91011 1.03857 1.19218 1.03543 0.97444 0.89825 1.21019 0.99662 0.94942 0.97373 1.20868 1.02500 0.95430 0.97900 1.20411 1.00446 0.99491 0.91601 1.19336 1.04730 0.94438 0.93666 1.19754 1.12206 0.95412 0.91696 1.19833 0.95106 0.89390 1.04533 1.21067 0.90462 0.81116 0.75499 1.90634 1.30293 1.77333 1.48567 1.50206 1.15810 1.08014 1.63199 1.23187 0.95503 0.83913 0.97482 1.20576 0.92346 0.91577 0.80994 1.86461 1.54416 1.79689 1.16608 1.21353 1.28241 0.92791 1.15863 0.93022 1.25893 0.95990 0.96025 0.99704 1.70014 1.36067 1.12373 1.37928 0.86321 0.78491 0.81049 0.79753 1.18447 1.14409 1.20961 1.24484 0.91746 0.90713 0.97496 1.21984 0.99618 0.86556 0.97496 1.41599 1.58005 1.15169 1.03812 0.73268 1.18246 1.03360 0.94787 0.85899 0.94269 0.92929 0.90540 0.89081 0.90863 0.83391 0.84411 0.87069 0.87409 0.86163 0.91722 0.88681 0.79070 0.91773 0.87924 0.88799 0.78602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.89 71.98 0.71 -1.29 16 2 C -0.08 -1.05 6.07 29.85 0.18 -0.86 16 3 C -0.10 -2.04 5.15 -19.77 -0.10 -2.14 16 4 C -0.11 -2.26 9.65 22.30 0.22 -2.05 16 5 C -0.15 -3.45 9.97 22.03 0.22 -3.23 16 6 C -0.10 -2.86 10.05 22.23 0.22 -2.64 16 7 C -0.12 -3.48 6.35 -20.20 -0.13 -3.61 16 8 C -0.18 -5.18 4.81 -18.63 -0.09 -5.27 16 9 C -0.05 -1.35 5.98 29.10 0.17 -1.18 16 10 C 0.53 19.79 8.05 87.65 0.71 20.50 16 11 O -0.59 -26.61 16.76 -3.03 -0.05 -26.66 16 12 N -0.64 -24.59 3.61 -839.59 -3.03 -27.62 16 13 C 0.12 5.16 8.23 86.49 0.71 5.87 16 14 C 0.19 8.20 1.06 -10.88 -0.01 8.19 16 15 O -0.56 -24.91 13.35 -148.98 -1.99 -26.90 16 16 C -0.54 -28.35 9.19 25.60 0.24 -28.12 16 17 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 18 C 0.02 1.28 5.47 84.66 0.46 1.75 16 19 N -0.93 -52.66 13.96 21.45 0.30 -52.36 16 20 Si 0.92 36.75 24.31 68.60 1.67 38.42 16 21 H -0.26 -9.97 7.05 99.48 0.70 -9.27 16 22 H -0.22 -7.54 5.16 99.48 0.51 -7.02 16 23 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 24 C 0.08 2.86 7.10 86.45 0.61 3.47 16 25 C 0.07 1.59 11.73 83.00 0.97 2.56 16 26 N -0.58 -11.76 6.07 -187.61 -1.14 -12.90 16 27 H 0.43 5.63 8.96 -92.71 -0.83 4.80 16 28 C 0.08 2.11 6.97 39.03 0.27 2.38 16 29 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 0.95 8.05 -2.39 -0.02 0.93 16 33 H 0.07 0.84 8.12 -2.39 -0.02 0.82 16 34 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.11 3.11 8.06 -2.91 -0.02 3.08 16 37 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.10 3.89 8.09 -2.39 -0.02 3.87 16 41 H 0.36 14.62 3.57 -74.06 -0.26 14.36 16 42 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 43 H 0.10 3.60 8.09 -2.38 -0.02 3.58 16 44 H 0.09 2.99 6.83 -2.39 -0.02 2.97 16 45 H 0.20 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -72.47 372.28 0.85 -71.62 By element: Atomic # 1 Polarization: 42.35 SS G_CDS: -0.27 Total: 42.07 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 5.37 Total: -5.66 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -3.87 Total: -92.88 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -2.04 Total: -53.56 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 1.67 Total: 38.42 kcal Total: -72.47 0.85 -71.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191953617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.838 kcal (2) G-P(sol) polarization free energy of solvation -72.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds