Wall clock time and date at job start Tue Mar 31 2020 14:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38355 * 119.85489 * 2 1 4 4 C 1.37959 * 120.14628 * 180.02562 * 3 2 1 5 5 C 1.39574 * 119.85241 * 359.97438 * 4 3 2 6 6 C 1.47821 * 120.14124 * 180.02562 * 5 4 3 7 7 C 1.35766 * 126.59032 * 0.02562 * 6 5 4 8 8 N 1.34130 * 107.51954 * 179.77985 * 7 6 5 9 9 C 1.30357 * 108.90585 * 0.36426 * 8 7 6 10 10 C 1.50699 * 125.48589 * 179.89454 * 9 8 7 11 11 C 1.53002 * 109.46899 * 89.69266 * 10 9 8 12 12 C 1.50702 * 109.47235 * 180.02562 * 11 10 9 13 13 O 1.21291 * 119.99680 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00409 * 180.02562 * 12 11 10 15 15 C 1.46495 * 120.00120 * 180.02562 * 14 12 11 16 16 H 1.09003 * 109.47495 * 34.99656 * 15 14 12 17 17 C 1.53002 * 109.47130 * 274.99902 * 15 14 12 18 18 C 1.50697 * 109.47265 * 154.99988 * 15 14 12 19 19 H 1.07999 * 119.99662 * 5.37284 * 18 15 14 20 20 C 1.37875 * 120.00120 * 185.37269 * 18 15 14 21 21 N 1.31515 * 119.99748 * 184.89036 * 20 18 15 22 22 Si 1.86794 * 120.00196 * 5.16703 * 20 18 15 23 23 H 1.48500 * 109.47373 * 269.72603 * 22 20 18 24 24 H 1.48505 * 109.47126 * 29.72474 * 22 20 18 25 25 H 1.48499 * 109.47207 * 149.72425 * 22 20 18 26 26 O 1.33999 * 109.03481 * 359.63156 * 9 8 7 27 27 C 1.39576 * 119.70998 * 0.27434 * 5 4 3 28 28 C 1.37961 * 119.85154 * 359.45333 * 27 5 4 29 29 H 1.08992 * 109.47039 * 89.99782 * 1 2 3 30 30 H 1.09001 * 109.46783 * 209.99914 * 1 2 3 31 31 H 1.09006 * 109.46725 * 329.99631 * 1 2 3 32 32 H 1.07998 * 119.92563 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.07550 * 180.02562 * 4 3 2 34 34 H 1.08008 * 126.23805 * 359.97438 * 7 6 5 35 35 H 1.09002 * 109.46924 * 329.69705 * 10 9 8 36 36 H 1.08997 * 109.47356 * 209.68859 * 10 9 8 37 37 H 1.09002 * 109.47493 * 60.00382 * 11 10 9 38 38 H 1.09003 * 109.47202 * 299.99844 * 11 10 9 39 39 H 0.96997 * 119.99372 * 0.02562 * 14 12 11 40 40 H 1.09000 * 109.47026 * 54.97693 * 17 15 14 41 41 H 1.09000 * 109.47127 * 174.97700 * 17 15 14 42 42 H 1.08997 * 109.46920 * 294.97726 * 17 15 14 43 43 H 0.97000 * 120.00553 * 355.27176 * 21 20 18 44 44 H 1.07999 * 120.06942 * 179.71756 * 27 5 4 45 45 H 1.07993 * 119.92502 * 180.27658 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5754 1.2070 -0.0005 5 6 4.2763 0.0000 -0.0005 6 6 5.7545 0.0000 -0.0005 7 6 6.5637 1.0902 0.0000 8 7 7.8314 0.6520 0.0047 9 6 7.8277 -0.6516 -0.0008 10 6 9.0524 -1.5299 -0.0004 11 6 9.4665 -1.8268 1.4423 12 6 10.6915 -2.7046 1.4428 13 8 11.1845 -3.0582 0.3926 14 7 11.2386 -3.0974 2.6102 15 6 12.4298 -3.9502 2.6106 16 1 13.0689 -3.6821 1.7693 17 6 12.0080 -5.4155 2.4839 18 6 13.1869 -3.7551 3.8989 19 1 12.7743 -3.1321 4.6786 20 6 14.4063 -4.3718 4.0821 21 7 15.0219 -4.2804 5.2406 22 14 15.1877 -5.3307 2.6823 23 1 14.7478 -6.7476 2.7468 24 1 14.7700 -4.7413 1.3848 25 1 16.6664 -5.2655 2.8025 26 8 6.5598 -1.0851 -0.0010 27 6 3.5753 -1.2070 -0.0058 28 6 2.1957 -1.2000 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6522 2.1332 0.0004 33 1 4.1118 2.1443 -0.0001 34 1 6.2448 2.1221 0.0000 35 1 9.8664 -1.0184 -0.5141 36 1 8.8291 -2.4649 -0.5140 37 1 8.6525 -2.3382 1.9561 38 1 9.6898 -0.8917 1.9560 39 1 10.8437 -2.8154 3.4500 40 1 11.3850 -5.5389 1.5981 41 1 12.8951 -6.0425 2.3945 42 1 11.4434 -5.7088 3.3689 43 1 14.6525 -3.7234 5.9436 44 1 4.1118 -2.1443 -0.0104 45 1 1.6522 -2.1332 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194740256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:13 Heat of formation + Delta-G solvation = -9.714644 kcal Electronic energy + Delta-G solvation = -25855.851592 eV Core-core repulsion = 22032.170040 eV Total energy + Delta-G solvation = -3823.681552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.51241 -39.68950 -39.17952 -35.28421 -34.98879 -34.33299 -33.27051 -32.43373 -31.47232 -30.22401 -29.39484 -26.97670 -25.10387 -24.64138 -23.64158 -22.58161 -21.65215 -21.06338 -20.59961 -19.59234 -18.05294 -17.80236 -16.92501 -16.56764 -16.11033 -15.80817 -15.57757 -15.39375 -15.12789 -14.29599 -14.20931 -14.10425 -13.91715 -13.64178 -13.38734 -13.11779 -13.06165 -12.70467 -12.70171 -12.58216 -12.25533 -12.14719 -11.89753 -11.72377 -11.50796 -11.47499 -11.46891 -11.17166 -10.73843 -10.55504 -10.09912 -9.97508 -9.78616 -9.44906 -9.29542 -8.87126 -8.57354 -8.25859 -8.20920 -6.56254 -4.24738 0.25628 0.92453 1.59491 2.30002 2.47647 3.17020 3.35435 3.35462 3.45317 3.58912 3.65693 4.10461 4.21425 4.36072 4.40822 4.43110 4.52303 4.69304 4.78378 4.83149 4.90536 5.04193 5.10683 5.17047 5.20957 5.21741 5.27720 5.42023 5.49290 5.57049 5.59237 5.62808 5.78939 5.86637 5.94499 6.08315 6.08517 6.09986 6.34449 6.42975 6.44708 6.59928 6.87667 7.24602 7.33024 7.51751 7.62201 8.21270 8.42065 8.67515 8.92121 9.46209 10.84294 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027489 B = 0.001820 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.332077 B =15382.119664 C =15658.263224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 C -0.116 4.116 4 C -0.093 4.093 5 C -0.016 4.016 6 C -0.016 4.016 7 C -0.017 4.017 8 N -0.479 5.479 9 C 0.209 3.791 10 C -0.008 4.008 11 C -0.139 4.139 12 C 0.505 3.495 13 O -0.557 6.557 14 N -0.700 5.700 15 C 0.234 3.766 16 H 0.049 0.951 17 C -0.158 4.158 18 C -0.609 4.609 19 H 0.062 0.938 20 C 0.035 3.965 21 N -0.905 5.905 22 Si 1.052 2.948 23 H -0.281 1.281 24 H -0.274 1.274 25 H -0.288 1.288 26 O -0.194 6.194 27 C -0.096 4.096 28 C -0.117 4.117 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.185 0.815 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.394 0.606 40 H 0.033 0.967 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.268 0.732 44 H 0.129 0.871 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.092 10.057 -10.694 32.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.080 4.080 3 C -0.134 4.134 4 C -0.111 4.111 5 C -0.016 4.016 6 C -0.068 4.068 7 C -0.157 4.157 8 N -0.207 5.207 9 C 0.003 3.997 10 C -0.046 4.046 11 C -0.180 4.180 12 C 0.290 3.710 13 O -0.437 6.437 14 N -0.348 5.348 15 C 0.130 3.870 16 H 0.067 0.933 17 C -0.217 4.217 18 C -0.648 4.648 19 H 0.080 0.920 20 C -0.171 4.171 21 N -0.539 5.539 22 Si 0.880 3.120 23 H -0.208 1.208 24 H -0.199 1.199 25 H -0.214 1.214 26 O -0.081 6.081 27 C -0.114 4.114 28 C -0.135 4.135 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.202 0.798 35 H 0.135 0.865 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.227 0.773 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.147 0.853 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -26.855 9.150 -11.796 30.725 hybrid contribution -2.160 0.783 1.027 2.517 sum -29.015 9.933 -10.769 32.504 Atomic orbital electron populations 1.20839 0.90853 1.03084 1.02580 1.20097 0.96418 0.93113 0.98409 1.20936 0.93473 0.97909 1.01100 1.21029 0.94161 0.96582 0.99345 1.17601 0.85936 0.94498 1.03607 1.21374 0.91363 0.84842 1.09263 1.23328 0.87550 0.99984 1.04876 1.70412 1.22816 1.09085 1.18373 1.26522 0.84005 0.90325 0.98825 1.19900 0.88530 0.98018 0.98195 1.21654 0.97856 1.01580 0.96945 1.20265 0.84949 0.81010 0.84753 1.90668 1.63697 1.57943 1.31344 1.46261 1.30605 1.50822 1.07089 1.19230 0.82694 0.85909 0.99154 0.93286 1.22395 1.00371 0.99384 0.99512 1.22166 1.06368 1.35234 1.00997 0.92004 1.25716 0.93942 0.96856 1.00578 1.70831 1.42431 1.37024 1.03590 0.83909 0.76177 0.76415 0.75457 1.20838 1.19942 1.21409 1.84451 1.17885 1.35913 1.69868 1.21297 0.94361 0.97433 0.98357 1.21001 0.93697 0.97935 1.00820 0.90882 0.91300 0.91299 0.85262 0.85213 0.79765 0.86456 0.87933 0.88865 0.88316 0.77326 0.94772 0.93144 0.93142 0.92168 0.85293 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 10.01 36.01 0.36 -0.12 16 2 C -0.08 -0.52 5.89 -104.53 -0.62 -1.14 16 3 C -0.12 -0.74 9.68 -39.64 -0.38 -1.13 16 4 C -0.09 -0.70 9.57 -39.19 -0.38 -1.07 16 5 C -0.02 -0.15 5.87 -104.98 -0.62 -0.77 16 6 C -0.02 -0.18 7.07 -36.55 -0.26 -0.44 16 7 C -0.02 -0.19 11.29 -17.43 -0.20 -0.39 16 8 N -0.48 -6.55 11.27 -10.82 -0.12 -6.67 16 9 C 0.21 2.73 7.58 -12.90 -0.10 2.63 16 10 C -0.01 -0.10 5.13 -27.88 -0.14 -0.25 16 11 C -0.14 -1.83 5.68 -27.88 -0.16 -1.99 16 12 C 0.51 9.15 7.79 -10.98 -0.09 9.06 16 13 O -0.56 -11.93 15.65 5.55 0.09 -11.84 16 14 N -0.70 -13.81 5.07 -54.93 -0.28 -14.08 16 15 C 0.23 5.57 2.14 -69.09 -0.15 5.43 16 16 H 0.05 1.28 6.08 -51.93 -0.32 0.97 16 17 C -0.16 -3.50 9.07 37.16 0.34 -3.17 16 18 C -0.61 -16.48 9.10 -34.44 -0.31 -16.79 16 19 H 0.06 1.74 7.95 -52.49 -0.42 1.33 16 20 C 0.03 0.98 5.43 -17.82 -0.10 0.89 16 21 N -0.91 -27.15 13.70 55.43 0.76 -26.39 16 22 Si 1.05 25.45 25.28 -169.99 -4.30 21.15 16 23 H -0.28 -6.44 6.82 56.52 0.39 -6.06 16 24 H -0.27 -6.41 6.35 56.52 0.36 -6.05 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 O -0.19 -2.48 10.59 4.20 0.04 -2.44 16 27 C -0.10 -0.86 9.73 -39.18 -0.38 -1.24 16 28 C -0.12 -0.85 9.68 -39.64 -0.38 -1.23 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 31 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 32 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 33 H 0.13 0.71 7.04 -52.49 -0.37 0.34 16 34 H 0.19 1.46 7.30 -52.48 -0.38 1.08 16 35 H 0.12 1.54 8.10 -51.93 -0.42 1.12 16 36 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.39 6.88 8.53 -40.82 -0.35 6.53 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 1.13 4.41 -51.93 -0.23 0.90 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.27 7.96 8.72 -40.82 -0.36 7.60 16 44 H 0.13 1.12 7.95 -52.49 -0.42 0.70 16 45 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -33.38 379.71 -7.97 -41.35 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.33 Total: 4.92 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -3.56 Total: -11.71 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.36 Total: -47.14 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.13 Total: -14.28 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -4.30 Total: 21.15 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.38 -7.97 -41.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194740256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.635 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds