Wall clock time and date at job start Tue Mar 31 2020 14:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38355 * 119.85489 * 2 1 4 4 C 1.37959 * 120.14628 * 180.02562 * 3 2 1 5 5 C 1.39574 * 119.85241 * 359.97438 * 4 3 2 6 6 C 1.47821 * 120.14124 * 180.02562 * 5 4 3 7 7 C 1.35766 * 126.59032 * 0.02562 * 6 5 4 8 8 N 1.34130 * 107.51954 * 179.77985 * 7 6 5 9 9 C 1.30357 * 108.90585 * 0.36426 * 8 7 6 10 10 C 1.50699 * 125.48589 * 179.89454 * 9 8 7 11 11 C 1.53002 * 109.46899 * 89.69266 * 10 9 8 12 12 C 1.50702 * 109.47235 * 180.02562 * 11 10 9 13 13 O 1.21291 * 119.99680 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00409 * 180.02562 * 12 11 10 15 15 C 1.46495 * 120.00120 * 180.02562 * 14 12 11 16 16 H 1.09003 * 109.47495 * 34.99656 * 15 14 12 17 17 C 1.53002 * 109.47130 * 274.99902 * 15 14 12 18 18 C 1.50697 * 109.47265 * 154.99988 * 15 14 12 19 19 H 1.07999 * 119.99662 * 5.37284 * 18 15 14 20 20 C 1.37875 * 120.00120 * 185.37269 * 18 15 14 21 21 N 1.31515 * 119.99748 * 184.89036 * 20 18 15 22 22 Si 1.86794 * 120.00196 * 5.16703 * 20 18 15 23 23 H 1.48500 * 109.47373 * 269.72603 * 22 20 18 24 24 H 1.48505 * 109.47126 * 29.72474 * 22 20 18 25 25 H 1.48499 * 109.47207 * 149.72425 * 22 20 18 26 26 O 1.33999 * 109.03481 * 359.63156 * 9 8 7 27 27 C 1.39576 * 119.70998 * 0.27434 * 5 4 3 28 28 C 1.37961 * 119.85154 * 359.45333 * 27 5 4 29 29 H 1.08992 * 109.47039 * 89.99782 * 1 2 3 30 30 H 1.09001 * 109.46783 * 209.99914 * 1 2 3 31 31 H 1.09006 * 109.46725 * 329.99631 * 1 2 3 32 32 H 1.07998 * 119.92563 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.07550 * 180.02562 * 4 3 2 34 34 H 1.08008 * 126.23805 * 359.97438 * 7 6 5 35 35 H 1.09002 * 109.46924 * 329.69705 * 10 9 8 36 36 H 1.08997 * 109.47356 * 209.68859 * 10 9 8 37 37 H 1.09002 * 109.47493 * 60.00382 * 11 10 9 38 38 H 1.09003 * 109.47202 * 299.99844 * 11 10 9 39 39 H 0.96997 * 119.99372 * 0.02562 * 14 12 11 40 40 H 1.09000 * 109.47026 * 54.97693 * 17 15 14 41 41 H 1.09000 * 109.47127 * 174.97700 * 17 15 14 42 42 H 1.08997 * 109.46920 * 294.97726 * 17 15 14 43 43 H 0.97000 * 120.00553 * 355.27176 * 21 20 18 44 44 H 1.07999 * 120.06942 * 179.71756 * 27 5 4 45 45 H 1.07993 * 119.92502 * 180.27658 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5754 1.2070 -0.0005 5 6 4.2763 0.0000 -0.0005 6 6 5.7545 0.0000 -0.0005 7 6 6.5637 1.0902 0.0000 8 7 7.8314 0.6520 0.0047 9 6 7.8277 -0.6516 -0.0008 10 6 9.0524 -1.5299 -0.0004 11 6 9.4665 -1.8268 1.4423 12 6 10.6915 -2.7046 1.4428 13 8 11.1845 -3.0582 0.3926 14 7 11.2386 -3.0974 2.6102 15 6 12.4298 -3.9502 2.6106 16 1 13.0689 -3.6821 1.7693 17 6 12.0080 -5.4155 2.4839 18 6 13.1869 -3.7551 3.8989 19 1 12.7743 -3.1321 4.6786 20 6 14.4063 -4.3718 4.0821 21 7 15.0219 -4.2804 5.2406 22 14 15.1877 -5.3307 2.6823 23 1 14.7478 -6.7476 2.7468 24 1 14.7700 -4.7413 1.3848 25 1 16.6664 -5.2655 2.8025 26 8 6.5598 -1.0851 -0.0010 27 6 3.5753 -1.2070 -0.0058 28 6 2.1957 -1.2000 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6522 2.1332 0.0004 33 1 4.1118 2.1443 -0.0001 34 1 6.2448 2.1221 0.0000 35 1 9.8664 -1.0184 -0.5141 36 1 8.8291 -2.4649 -0.5140 37 1 8.6525 -2.3382 1.9561 38 1 9.6898 -0.8917 1.9560 39 1 10.8437 -2.8154 3.4500 40 1 11.3850 -5.5389 1.5981 41 1 12.8951 -6.0425 2.3945 42 1 11.4434 -5.7088 3.3689 43 1 14.6525 -3.7234 5.9436 44 1 4.1118 -2.1443 -0.0104 45 1 1.6522 -2.1332 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194740256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:12 Heat of formation + Delta-G solvation = -32.357752 kcal Electronic energy + Delta-G solvation = -25856.833471 eV Core-core repulsion = 22032.170040 eV Total energy + Delta-G solvation = -3824.663430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.41976 -40.72916 -40.21705 -36.97854 -36.00580 -35.20625 -34.47046 -34.08155 -32.01871 -31.74207 -30.37574 -27.74583 -26.87301 -25.87240 -24.32299 -23.32566 -22.77388 -22.12666 -21.67807 -21.22387 -19.79314 -18.80737 -18.11218 -17.68507 -17.16105 -16.98925 -16.43470 -16.32369 -16.18738 -15.68418 -15.05748 -14.89375 -14.82222 -14.65475 -14.64831 -14.42070 -14.19277 -14.15306 -13.95707 -13.46714 -13.44794 -13.29634 -13.08538 -13.02221 -12.48913 -12.45080 -12.43331 -12.24308 -11.98509 -11.96739 -11.68346 -11.64981 -10.97941 -10.87166 -10.70993 -10.60842 -9.99130 -9.92273 -8.98115 -8.78955 -6.48329 -0.44580 0.38526 0.80928 1.41733 1.42261 1.52194 1.60534 1.69206 1.71608 2.39576 2.42689 2.77925 2.98626 3.03619 3.50073 3.69654 3.81973 3.88259 3.96376 3.99270 4.04365 4.08204 4.30104 4.39214 4.43121 4.51070 4.56925 4.66503 4.67521 4.74747 4.77454 4.81165 4.85512 4.86309 4.91401 5.04265 5.08514 5.19096 5.24516 5.36797 5.42428 5.45827 5.60672 5.60846 5.63130 5.94018 5.98535 6.49681 6.60419 6.80557 7.26803 7.40260 8.60443 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027489 B = 0.001820 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.332077 B =15382.119664 C =15658.263224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.079 4.079 3 C -0.119 4.119 4 C -0.093 4.093 5 C -0.044 4.044 6 C -0.013 4.013 7 C -0.029 4.029 8 N -0.499 5.499 9 C 0.196 3.804 10 C -0.001 4.001 11 C -0.123 4.123 12 C 0.507 3.493 13 O -0.589 6.589 14 N -0.704 5.704 15 C 0.235 3.765 16 H 0.028 0.972 17 C -0.152 4.152 18 C -0.604 4.604 19 H 0.041 0.959 20 C -0.012 4.012 21 N -0.936 5.936 22 Si 1.083 2.917 23 H -0.258 1.258 24 H -0.265 1.265 25 H -0.288 1.288 26 O -0.204 6.204 27 C -0.111 4.111 28 C -0.125 4.125 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.214 0.786 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.405 0.595 40 H 0.047 0.953 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.257 0.743 44 H 0.122 0.878 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.930 10.643 -11.657 35.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.079 4.079 3 C -0.137 4.137 4 C -0.110 4.110 5 C -0.044 4.044 6 C -0.066 4.066 7 C -0.169 4.169 8 N -0.228 5.228 9 C -0.009 4.009 10 C -0.040 4.040 11 C -0.163 4.163 12 C 0.294 3.706 13 O -0.471 6.471 14 N -0.352 5.352 15 C 0.130 3.870 16 H 0.046 0.954 17 C -0.210 4.210 18 C -0.643 4.643 19 H 0.059 0.941 20 C -0.212 4.212 21 N -0.571 5.571 22 Si 0.906 3.094 23 H -0.183 1.183 24 H -0.190 1.190 25 H -0.214 1.214 26 O -0.091 6.091 27 C -0.130 4.130 28 C -0.143 4.143 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.174 0.826 33 H 0.166 0.834 34 H 0.230 0.770 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.240 0.760 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.140 0.860 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -29.739 9.747 -12.748 33.792 hybrid contribution -1.469 0.705 1.326 2.101 sum -31.208 10.453 -11.422 34.838 Atomic orbital electron populations 1.20904 0.88956 1.04041 1.03412 1.20486 0.97882 0.92850 0.96720 1.21304 0.93183 0.99057 1.00169 1.21316 0.94825 0.96555 0.98348 1.17776 0.85038 0.95666 1.05955 1.21848 0.92208 0.84490 1.08026 1.23782 0.86670 1.01313 1.05088 1.70385 1.24218 1.09447 1.18738 1.26391 0.84129 0.90284 1.00081 1.19770 0.88386 0.98104 0.97695 1.21552 0.95880 1.01053 0.97858 1.20974 0.85626 0.80532 0.83445 1.90652 1.64922 1.59130 1.32379 1.46119 1.29775 1.50861 1.08456 1.18926 0.83893 0.87846 0.96291 0.95443 1.22278 1.00571 0.97716 1.00471 1.22358 1.06433 1.33795 1.01668 0.94123 1.26902 0.94847 0.97819 1.01606 1.70934 1.43328 1.38486 1.04391 0.83507 0.75555 0.76865 0.73443 1.18280 1.18981 1.21414 1.84435 1.17975 1.36678 1.70024 1.21389 0.95283 0.97157 0.99123 1.21238 0.93138 0.99217 1.00717 0.89969 0.90696 0.90078 0.82643 0.83368 0.76978 0.87221 0.87619 0.86458 0.87115 0.76044 0.93380 0.93372 0.92514 0.93396 0.86007 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 71.24 0.71 0.11 16 2 C -0.08 -0.84 5.89 -19.81 -0.12 -0.96 16 3 C -0.12 -1.21 9.68 22.23 0.22 -0.99 16 4 C -0.09 -1.20 9.57 22.53 0.22 -0.98 16 5 C -0.04 -0.80 5.87 -20.10 -0.12 -0.92 16 6 C -0.01 -0.29 7.07 24.23 0.17 -0.12 16 7 C -0.03 -0.62 11.29 83.77 0.95 0.32 16 8 N -0.50 -13.30 11.27 -302.87 -3.41 -16.71 16 9 C 0.20 5.02 7.58 88.33 0.67 5.69 16 10 C 0.00 -0.03 5.13 29.85 0.15 0.13 16 11 C -0.12 -3.05 5.68 29.85 0.17 -2.88 16 12 C 0.51 17.84 7.79 87.66 0.68 18.53 16 13 O -0.59 -24.91 15.65 -3.06 -0.05 -24.96 16 14 N -0.70 -27.17 5.07 -446.09 -2.26 -29.43 16 15 C 0.24 11.10 2.14 44.25 0.09 11.20 16 16 H 0.03 1.43 6.08 -2.39 -0.01 1.42 16 17 C -0.15 -6.50 9.07 71.98 0.65 -5.85 16 18 C -0.60 -32.92 9.10 25.60 0.23 -32.68 16 19 H 0.04 2.33 7.95 -2.91 -0.02 2.31 16 20 C -0.01 -0.70 5.43 84.65 0.46 -0.24 16 21 N -0.94 -57.06 13.70 21.45 0.29 -56.76 16 22 Si 1.08 50.84 25.28 68.60 1.73 52.57 16 23 H -0.26 -11.05 6.82 99.48 0.68 -10.37 16 24 H -0.26 -11.96 6.35 99.48 0.63 -11.33 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 O -0.20 -5.15 10.59 -7.90 -0.08 -5.23 16 27 C -0.11 -1.93 9.73 22.53 0.22 -1.71 16 28 C -0.13 -1.64 9.68 22.23 0.22 -1.42 16 29 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.32 8.08 -2.39 -0.02 0.30 16 31 H 0.08 0.25 8.08 -2.38 -0.02 0.23 16 32 H 0.16 0.71 8.06 -2.91 -0.02 0.68 16 33 H 0.15 1.24 7.04 -2.91 -0.02 1.22 16 34 H 0.21 2.97 7.30 -2.91 -0.02 2.95 16 35 H 0.11 2.86 8.10 -2.39 -0.02 2.84 16 36 H 0.11 2.51 8.10 -2.39 -0.02 2.49 16 37 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.40 13.79 8.53 -92.71 -0.79 13.00 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.05 2.06 4.41 -2.39 -0.01 2.05 16 42 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.26 15.70 8.72 -92.71 -0.81 14.90 16 44 H 0.12 2.15 7.95 -2.91 -0.02 2.13 16 45 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -72.44 379.71 1.88 -70.55 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.08 Total: 22.76 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 5.58 Total: -12.79 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -5.38 Total: -102.91 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.13 Total: -30.19 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 1.73 Total: 52.57 kcal Total: -72.44 1.88 -70.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194740256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.197 kcal (2) G-P(sol) polarization free energy of solvation -72.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds