Wall clock time and date at job start Tue Mar 31 2020 14:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37905 * 120.08738 * 2 1 4 4 C 1.38376 * 120.17284 * 180.02562 * 3 2 1 5 5 C 1.38429 * 120.34439 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.16765 * 359.78196 * 5 4 3 7 7 C 1.39816 * 120.08617 * 180.02562 * 2 1 3 8 8 C 1.47209 * 120.16954 * 359.95660 * 7 2 1 9 9 C 1.34814 * 119.99955 * 180.27052 * 8 7 2 10 10 C 1.46426 * 120.00009 * 179.72548 * 9 8 7 11 11 O 1.21696 * 119.99755 * 355.48325 * 10 9 8 12 12 N 1.34770 * 119.99865 * 175.48620 * 10 9 8 13 13 C 1.46967 * 120.59592 * 5.10041 * 12 10 9 14 14 C 1.53810 * 108.39663 * 124.76035 * 13 12 10 15 15 N 1.46962 * 108.58355 * 49.64016 * 14 13 12 16 16 C 1.34772 * 120.59553 * 124.62208 * 15 14 13 17 17 O 1.21691 * 119.99615 * 185.48645 * 16 15 14 18 18 C 1.46370 * 120.00025 * 5.48684 * 16 15 14 19 19 H 1.08000 * 120.00352 * 337.59992 * 18 16 15 20 20 C 1.40052 * 119.99783 * 157.59675 * 18 16 15 21 21 N 1.30672 * 120.00220 * 171.44795 * 20 18 16 22 22 Si 1.86806 * 120.00133 * 351.44752 * 20 18 16 23 23 H 1.48493 * 109.47140 * 85.24243 * 22 20 18 24 24 H 1.48493 * 109.47132 * 205.24499 * 22 20 18 25 25 H 1.48507 * 109.46751 * 325.24205 * 22 20 18 26 26 C 1.46970 * 118.80682 * 304.64668 * 15 14 13 27 27 C 1.46966 * 120.59088 * 185.38361 * 12 10 9 28 28 H 1.09009 * 109.46838 * 269.97921 * 1 2 3 29 29 H 1.08998 * 109.47286 * 29.97185 * 1 2 3 30 30 H 1.08998 * 109.47477 * 149.98007 * 1 2 3 31 31 H 1.08005 * 119.91497 * 0.04330 * 3 2 1 32 32 H 1.08004 * 119.83418 * 180.02562 * 4 3 2 33 33 H 1.07995 * 119.91641 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.08396 * 180.25496 * 6 5 4 35 35 H 1.07997 * 120.00361 * 359.97438 * 8 7 2 36 36 H 1.07997 * 119.99628 * 359.72830 * 9 8 7 37 37 H 1.09003 * 109.60628 * 244.54263 * 13 12 10 38 38 H 1.09002 * 109.60918 * 5.04988 * 13 12 10 39 39 H 1.08993 * 109.74007 * 289.84835 * 14 13 12 40 40 H 1.09007 * 109.52671 * 169.30540 * 14 13 12 41 41 H 0.96996 * 120.00574 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.60855 * 295.47810 * 26 15 14 43 43 H 1.09003 * 109.75037 * 175.05311 * 26 15 14 44 44 H 1.08997 * 109.61460 * 354.94246 * 27 12 10 45 45 H 1.09004 * 109.61227 * 115.46417 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1932 0.0000 4 6 3.5821 1.1953 -0.0005 5 6 4.2832 0.0017 -0.0005 6 6 3.6064 -1.1994 0.0045 7 6 2.2079 -1.2098 -0.0005 8 6 1.4776 -2.4879 -0.0001 9 6 2.1569 -3.6524 0.0048 10 6 1.4304 -4.9238 0.0113 11 8 0.2163 -4.9304 0.0952 12 7 2.1063 -6.0865 -0.0756 13 6 3.5758 -6.1001 -0.0650 14 6 4.0445 -7.0289 1.0679 15 7 3.3253 -8.3055 0.9547 16 6 4.0012 -9.4681 0.8669 17 8 3.3999 -10.5083 0.6734 18 6 5.4584 -9.4797 1.0043 19 1 6.0259 -8.5805 0.8151 20 6 6.1168 -10.6570 1.3812 21 7 7.4216 -10.7169 1.3426 22 14 5.1298 -12.1416 1.9391 23 1 4.7100 -12.9309 0.7535 24 1 5.9677 -12.9881 2.8259 25 1 3.9272 -11.6858 2.6817 26 6 1.8558 -8.2914 0.9385 27 6 1.3869 -7.3631 -0.1888 28 1 -0.3633 -0.0004 1.0278 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6584 2.1286 0.0007 32 1 4.1180 2.1330 -0.0001 33 1 5.3632 0.0114 -0.0005 34 1 4.1548 -2.1299 0.0087 35 1 0.3976 -2.4928 0.0010 36 1 3.2368 -3.6475 0.0041 37 1 3.9451 -6.4701 -1.0215 38 1 3.9498 -5.0910 0.1087 39 1 3.8275 -6.5710 2.0329 40 1 5.1166 -7.2035 0.9759 41 1 7.8777 -11.5323 1.6032 42 1 1.4829 -7.9234 1.8943 43 1 1.4797 -9.2992 0.7626 44 1 0.3150 -7.1884 -0.0968 45 1 1.6041 -7.8210 -1.1539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219503416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:03 Heat of formation + Delta-G solvation = -24.824066 kcal Electronic energy + Delta-G solvation = -26997.215761 eV Core-core repulsion = 23172.879016 eV Total energy + Delta-G solvation = -3824.336745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.22600 -39.62322 -38.29329 -36.22088 -34.39540 -33.30167 -33.06323 -32.90444 -31.34340 -29.85052 -27.73830 -27.23259 -26.34903 -24.58448 -23.32511 -22.57343 -21.61605 -20.71400 -19.39794 -18.38085 -17.79612 -16.76179 -16.38441 -16.23910 -15.74329 -15.46449 -15.19520 -14.99661 -14.77907 -14.34128 -14.21375 -14.12554 -13.98626 -13.62128 -13.39597 -13.12875 -12.75103 -12.58082 -12.50681 -12.42824 -12.17937 -12.05886 -11.85018 -11.37706 -11.27113 -11.16584 -11.08334 -11.05215 -10.79344 -10.58647 -10.45408 -9.78704 -9.59495 -9.10620 -9.06572 -8.83178 -8.44385 -8.03537 -7.57500 -6.68053 -4.88875 0.29985 1.05979 1.79991 3.02585 3.22393 3.39437 3.42975 3.59597 3.63400 4.09364 4.11614 4.30838 4.41968 4.45300 4.51991 4.61120 4.81142 4.87661 4.94624 5.12763 5.16872 5.20544 5.27095 5.31176 5.32287 5.42648 5.47214 5.52065 5.67751 5.72459 5.73659 5.80130 5.87456 5.93562 6.03126 6.14478 6.16926 6.21464 6.22951 6.35662 6.40182 6.61823 6.63728 6.97236 7.46500 7.52044 7.79078 8.20522 8.22756 8.63674 9.04175 9.92621 10.33288 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.002476 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.661698 B =11306.637177 C =12470.234064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.063 4.063 3 C -0.125 4.125 4 C -0.108 4.108 5 C -0.127 4.127 6 C -0.098 4.098 7 C -0.074 4.074 8 C -0.030 4.030 9 C -0.205 4.205 10 C 0.547 3.453 11 O -0.554 6.554 12 N -0.601 5.601 13 C 0.087 3.913 14 C 0.107 3.893 15 N -0.633 5.633 16 C 0.558 3.442 17 O -0.613 6.613 18 C -0.536 4.536 19 H 0.092 0.908 20 C 0.105 3.895 21 N -0.829 5.829 22 Si 0.958 3.042 23 H -0.275 1.275 24 H -0.316 1.316 25 H -0.268 1.268 26 C 0.105 3.895 27 C 0.098 3.902 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.112 0.888 41 H 0.282 0.718 42 H 0.054 0.946 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.075 23.610 -2.520 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.126 4.126 5 C -0.145 4.145 6 C -0.115 4.115 7 C -0.074 4.074 8 C -0.050 4.050 9 C -0.225 4.225 10 C 0.338 3.662 11 O -0.435 6.435 12 N -0.333 5.333 13 C -0.036 4.036 14 C -0.018 4.018 15 N -0.367 5.367 16 C 0.367 3.633 17 O -0.503 6.503 18 C -0.572 4.572 19 H 0.110 0.890 20 C -0.113 4.113 21 N -0.459 5.459 22 Si 0.789 3.211 23 H -0.200 1.200 24 H -0.247 1.247 25 H -0.193 1.193 26 C -0.020 4.020 27 C -0.025 4.025 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.130 0.870 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.810 22.980 -2.567 24.406 hybrid contribution -0.004 -0.493 0.212 0.537 sum -7.814 22.487 -2.355 23.922 Atomic orbital electron populations 1.20912 0.90887 1.03286 1.02887 1.20111 0.96160 0.92273 0.97735 1.20984 0.94315 0.97417 1.01610 1.21291 0.94245 0.98249 0.98816 1.21113 1.00200 0.92288 1.00896 1.21457 0.93267 0.98624 0.98195 1.18901 0.93131 0.92420 1.02931 1.22383 1.00359 0.90312 0.91914 1.23097 1.00699 0.92280 1.06425 1.18289 0.87118 0.84219 0.76622 1.90770 1.13869 1.87572 1.51282 1.47973 1.07351 1.06277 1.71682 1.22496 0.79062 1.01054 1.01014 1.21961 0.99485 0.84225 0.96113 1.47757 1.04149 1.06570 1.78259 1.18410 0.88713 0.80735 0.75460 1.90273 1.71089 1.31675 1.57304 1.20702 0.88419 0.98954 1.49119 0.89028 1.25677 0.94898 0.99792 0.90946 1.69538 1.09122 1.29414 1.37806 0.85405 0.77980 0.79122 0.78590 1.20049 1.24664 1.19326 1.21631 0.83032 1.00557 0.96752 1.22086 0.97738 0.82914 0.99737 0.90640 0.91249 0.90809 0.85814 0.85910 0.85624 0.85333 0.84536 0.84943 0.90578 0.89253 0.92681 0.87042 0.90748 0.92808 0.88380 0.88648 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.52 36.01 0.34 -0.52 16 2 C -0.06 -0.54 5.92 -104.15 -0.62 -1.16 16 3 C -0.13 -0.95 9.69 -39.65 -0.38 -1.33 16 4 C -0.11 -0.79 10.04 -39.46 -0.40 -1.18 16 5 C -0.13 -0.99 10.03 -39.65 -0.40 -1.38 16 6 C -0.10 -0.86 9.41 -39.11 -0.37 -1.23 16 7 C -0.07 -0.72 5.87 -105.06 -0.62 -1.33 16 8 C -0.03 -0.32 8.89 -37.15 -0.33 -0.65 16 9 C -0.20 -2.36 8.73 -37.50 -0.33 -2.69 16 10 C 0.55 8.11 7.61 -12.97 -0.10 8.01 16 11 O -0.55 -9.79 15.65 5.19 0.08 -9.71 16 12 N -0.60 -8.93 2.94 -173.85 -0.51 -9.44 16 13 C 0.09 1.17 6.51 -3.37 -0.02 1.15 16 14 C 0.11 1.77 6.50 -3.37 -0.02 1.75 16 15 N -0.63 -13.11 2.95 -173.87 -0.51 -13.62 16 16 C 0.56 14.32 7.11 -12.99 -0.09 14.23 16 17 O -0.61 -17.32 12.36 5.20 0.06 -17.26 16 18 C -0.54 -14.41 9.28 -35.63 -0.33 -14.74 16 19 H 0.09 2.39 6.09 -52.49 -0.32 2.07 16 20 C 0.10 2.90 5.52 -17.37 -0.10 2.80 16 21 N -0.83 -22.85 13.92 55.55 0.77 -22.07 16 22 Si 0.96 24.72 25.88 -169.99 -4.40 20.32 16 23 H -0.27 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.32 -7.71 7.11 56.52 0.40 -7.31 16 25 H -0.27 -7.23 6.86 56.52 0.39 -6.84 16 26 C 0.10 1.91 6.59 -3.59 -0.02 1.89 16 27 C 0.10 1.57 6.60 -3.59 -0.02 1.54 16 28 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.07 0.54 6.33 -51.93 -0.33 0.21 16 31 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 32 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.13 0.96 6.17 -52.48 -0.32 0.64 16 35 H 0.14 1.52 5.83 -52.49 -0.31 1.21 16 36 H 0.13 1.23 3.90 -52.49 -0.20 1.02 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 0.89 5.34 -51.93 -0.28 0.62 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.11 1.94 5.42 -51.93 -0.28 1.66 16 41 H 0.28 7.19 8.29 -40.82 -0.34 6.85 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.10 1.92 7.00 -51.93 -0.36 1.56 16 44 H 0.10 1.48 6.99 -51.93 -0.36 1.12 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 362.91 15.07 5.47 5.47 Total: -1.00 -33.65 362.91 -8.56 -42.21 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.72 Total: -1.04 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -3.80 Total: 5.14 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.25 Total: -45.13 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: 0.15 Total: -26.97 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -4.40 Total: 20.32 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.65 -8.56 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219503416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.382 kcal (2) G-P(sol) polarization free energy of solvation -33.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds