Wall clock time and date at job start Tue Mar 31 2020 14:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37905 * 120.08738 * 2 1 4 4 C 1.38376 * 120.17284 * 180.02562 * 3 2 1 5 5 C 1.38429 * 120.34439 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.16765 * 359.78196 * 5 4 3 7 7 C 1.39816 * 120.08617 * 180.02562 * 2 1 3 8 8 C 1.47209 * 120.16954 * 359.95660 * 7 2 1 9 9 C 1.34814 * 119.99955 * 180.27052 * 8 7 2 10 10 C 1.46426 * 120.00009 * 179.72548 * 9 8 7 11 11 O 1.21696 * 119.99755 * 355.48325 * 10 9 8 12 12 N 1.34770 * 119.99865 * 175.48620 * 10 9 8 13 13 C 1.46967 * 120.59592 * 5.10041 * 12 10 9 14 14 C 1.53810 * 108.39663 * 124.76035 * 13 12 10 15 15 N 1.46962 * 108.58355 * 49.64016 * 14 13 12 16 16 C 1.34772 * 120.59553 * 124.62208 * 15 14 13 17 17 O 1.21691 * 119.99615 * 185.48645 * 16 15 14 18 18 C 1.46370 * 120.00025 * 5.48684 * 16 15 14 19 19 H 1.08000 * 120.00352 * 337.59992 * 18 16 15 20 20 C 1.40052 * 119.99783 * 157.59675 * 18 16 15 21 21 N 1.30672 * 120.00220 * 171.44795 * 20 18 16 22 22 Si 1.86806 * 120.00133 * 351.44752 * 20 18 16 23 23 H 1.48493 * 109.47140 * 85.24243 * 22 20 18 24 24 H 1.48493 * 109.47132 * 205.24499 * 22 20 18 25 25 H 1.48507 * 109.46751 * 325.24205 * 22 20 18 26 26 C 1.46970 * 118.80682 * 304.64668 * 15 14 13 27 27 C 1.46966 * 120.59088 * 185.38361 * 12 10 9 28 28 H 1.09009 * 109.46838 * 269.97921 * 1 2 3 29 29 H 1.08998 * 109.47286 * 29.97185 * 1 2 3 30 30 H 1.08998 * 109.47477 * 149.98007 * 1 2 3 31 31 H 1.08005 * 119.91497 * 0.04330 * 3 2 1 32 32 H 1.08004 * 119.83418 * 180.02562 * 4 3 2 33 33 H 1.07995 * 119.91641 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.08396 * 180.25496 * 6 5 4 35 35 H 1.07997 * 120.00361 * 359.97438 * 8 7 2 36 36 H 1.07997 * 119.99628 * 359.72830 * 9 8 7 37 37 H 1.09003 * 109.60628 * 244.54263 * 13 12 10 38 38 H 1.09002 * 109.60918 * 5.04988 * 13 12 10 39 39 H 1.08993 * 109.74007 * 289.84835 * 14 13 12 40 40 H 1.09007 * 109.52671 * 169.30540 * 14 13 12 41 41 H 0.96996 * 120.00574 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.60855 * 295.47810 * 26 15 14 43 43 H 1.09003 * 109.75037 * 175.05311 * 26 15 14 44 44 H 1.08997 * 109.61460 * 354.94246 * 27 12 10 45 45 H 1.09004 * 109.61227 * 115.46417 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1932 0.0000 4 6 3.5821 1.1953 -0.0005 5 6 4.2832 0.0017 -0.0005 6 6 3.6064 -1.1994 0.0045 7 6 2.2079 -1.2098 -0.0005 8 6 1.4776 -2.4879 -0.0001 9 6 2.1569 -3.6524 0.0048 10 6 1.4304 -4.9238 0.0113 11 8 0.2163 -4.9304 0.0952 12 7 2.1063 -6.0865 -0.0756 13 6 3.5758 -6.1001 -0.0650 14 6 4.0445 -7.0289 1.0679 15 7 3.3253 -8.3055 0.9547 16 6 4.0012 -9.4681 0.8669 17 8 3.3999 -10.5083 0.6734 18 6 5.4584 -9.4797 1.0043 19 1 6.0259 -8.5805 0.8151 20 6 6.1168 -10.6570 1.3812 21 7 7.4216 -10.7169 1.3426 22 14 5.1298 -12.1416 1.9391 23 1 4.7100 -12.9309 0.7535 24 1 5.9677 -12.9881 2.8259 25 1 3.9272 -11.6858 2.6817 26 6 1.8558 -8.2914 0.9385 27 6 1.3869 -7.3631 -0.1888 28 1 -0.3633 -0.0004 1.0278 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6584 2.1286 0.0007 32 1 4.1180 2.1330 -0.0001 33 1 5.3632 0.0114 -0.0005 34 1 4.1548 -2.1299 0.0087 35 1 0.3976 -2.4928 0.0010 36 1 3.2368 -3.6475 0.0041 37 1 3.9451 -6.4701 -1.0215 38 1 3.9498 -5.0910 0.1087 39 1 3.8275 -6.5710 2.0329 40 1 5.1166 -7.2035 0.9759 41 1 7.8777 -11.5323 1.6032 42 1 1.4829 -7.9234 1.8943 43 1 1.4797 -9.2992 0.7626 44 1 0.3150 -7.1884 -0.0968 45 1 1.6041 -7.8210 -1.1539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219503416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:03 Heat of formation + Delta-G solvation = -44.826205 kcal Electronic energy + Delta-G solvation = -26998.083119 eV Core-core repulsion = 23172.879016 eV Total energy + Delta-G solvation = -3825.204103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40797 -40.38474 -39.89644 -37.78618 -35.20512 -34.99664 -34.77272 -33.69949 -32.63769 -30.63836 -29.36369 -28.17979 -27.66269 -25.59996 -24.56653 -23.73569 -22.54750 -21.74638 -20.73770 -19.62016 -19.00522 -18.39827 -17.71147 -17.31140 -17.09324 -16.63476 -16.38841 -16.23276 -15.90364 -15.86496 -15.61468 -15.00457 -14.79220 -14.61097 -14.45999 -14.38862 -14.06391 -13.97158 -13.96454 -13.45266 -13.36594 -13.06347 -13.02946 -12.94875 -12.69392 -12.47186 -12.37741 -12.30699 -11.93897 -11.76888 -11.56240 -11.34933 -11.19485 -10.95851 -10.21708 -10.03450 -9.68173 -9.27490 -9.07498 -8.78445 -6.97729 -0.45732 0.48491 1.01608 1.30833 1.34843 1.55128 1.85006 2.05655 2.23711 2.30253 2.62699 2.94326 3.27074 3.40301 3.76242 3.84332 3.88827 3.94973 4.02314 4.06131 4.15889 4.23762 4.34091 4.40794 4.44123 4.53759 4.54513 4.64690 4.72200 4.76615 4.78550 4.82615 4.90054 5.02467 5.05264 5.09067 5.13115 5.20466 5.30309 5.43639 5.59559 5.60861 5.67447 5.72022 5.92756 6.07460 6.20170 6.34762 6.62725 7.06334 7.09733 7.93516 8.27010 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.002476 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.661698 B =11306.637177 C =12470.234064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.072 4.072 3 C -0.133 4.133 4 C -0.106 4.106 5 C -0.137 4.137 6 C -0.105 4.105 7 C -0.099 4.099 8 C -0.012 4.012 9 C -0.220 4.220 10 C 0.546 3.454 11 O -0.589 6.589 12 N -0.604 5.604 13 C 0.096 3.904 14 C 0.102 3.898 15 N -0.632 5.632 16 C 0.554 3.446 17 O -0.645 6.645 18 C -0.549 4.549 19 H 0.095 0.905 20 C 0.075 3.925 21 N -0.848 5.848 22 Si 0.996 3.004 23 H -0.292 1.292 24 H -0.293 1.293 25 H -0.290 1.290 26 C 0.106 3.894 27 C 0.109 3.891 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.128 0.872 36 H 0.158 0.842 37 H 0.076 0.924 38 H 0.131 0.869 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.291 0.709 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 26.447 -2.500 27.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.072 4.072 3 C -0.151 4.151 4 C -0.124 4.124 5 C -0.154 4.154 6 C -0.122 4.122 7 C -0.099 4.099 8 C -0.032 4.032 9 C -0.240 4.240 10 C 0.339 3.661 11 O -0.473 6.473 12 N -0.335 5.335 13 C -0.027 4.027 14 C -0.022 4.022 15 N -0.365 5.365 16 C 0.361 3.639 17 O -0.539 6.539 18 C -0.585 4.585 19 H 0.113 0.887 20 C -0.141 4.141 21 N -0.479 5.479 22 Si 0.828 3.172 23 H -0.219 1.219 24 H -0.222 1.222 25 H -0.216 1.216 26 C -0.018 4.018 27 C -0.015 4.015 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.146 0.854 36 H 0.175 0.825 37 H 0.094 0.906 38 H 0.149 0.851 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.117 0.883 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.233 25.858 -2.537 26.970 hybrid contribution -0.233 -1.172 0.202 1.212 sum -7.466 24.686 -2.335 25.896 Atomic orbital electron populations 1.20946 0.90190 1.03693 1.03224 1.20377 0.96944 0.92489 0.97371 1.21289 0.94793 0.97838 1.01205 1.21673 0.94352 0.99215 0.97165 1.21422 1.01340 0.92104 1.00567 1.21688 0.92989 0.99719 0.97838 1.18956 0.93759 0.92106 1.05081 1.22454 1.00104 0.90910 0.89695 1.22982 1.01558 0.90581 1.08861 1.18781 0.86823 0.84988 0.75467 1.90751 1.15501 1.88042 1.52956 1.48015 1.07873 1.05870 1.71744 1.22523 0.78128 1.02444 0.99569 1.22185 0.98747 0.82913 0.98330 1.47710 1.05331 1.06787 1.76713 1.18381 0.88638 0.81653 0.75189 1.90246 1.71634 1.33374 1.58629 1.20931 0.89329 0.99088 1.49189 0.88736 1.26091 0.95441 1.01095 0.91466 1.69534 1.09327 1.30346 1.38651 0.84875 0.76712 0.77976 0.77629 1.21878 1.22189 1.21626 1.21693 0.81475 1.00365 0.98228 1.21862 0.98043 0.83155 0.98471 0.90299 0.89652 0.91627 0.83804 0.83562 0.83736 0.84214 0.85440 0.82533 0.90597 0.85139 0.91193 0.87864 0.89835 0.91884 0.90197 0.88294 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.52 71.24 0.68 -0.88 16 2 C -0.07 -1.11 5.92 -19.56 -0.12 -1.23 16 3 C -0.13 -1.66 9.69 22.22 0.22 -1.45 16 4 C -0.11 -1.21 10.04 22.35 0.22 -0.99 16 5 C -0.14 -1.71 10.03 22.23 0.22 -1.49 16 6 C -0.10 -1.58 9.41 22.57 0.21 -1.37 16 7 C -0.10 -1.75 5.87 -20.15 -0.12 -1.86 16 8 C -0.01 -0.24 8.89 23.84 0.21 -0.03 16 9 C -0.22 -4.63 8.73 23.62 0.21 -4.42 16 10 C 0.55 15.49 7.61 86.38 0.66 16.15 16 11 O -0.59 -20.58 15.65 -4.34 -0.07 -20.64 16 12 N -0.60 -17.02 2.94 -822.15 -2.42 -19.43 16 13 C 0.10 2.35 6.51 86.56 0.56 2.91 16 14 C 0.10 3.21 6.50 86.56 0.56 3.77 16 15 N -0.63 -25.96 2.95 -822.23 -2.42 -28.38 16 16 C 0.55 28.63 7.11 86.36 0.61 29.24 16 17 O -0.65 -37.09 12.36 -4.32 -0.05 -37.15 16 18 C -0.55 -29.57 9.28 24.83 0.23 -29.34 16 19 H 0.09 4.93 6.09 -2.91 -0.02 4.91 16 20 C 0.07 4.14 5.52 85.31 0.47 4.61 16 21 N -0.85 -46.35 13.92 21.84 0.30 -46.05 16 22 Si 1.00 51.15 25.88 68.60 1.78 52.92 16 23 H -0.29 -15.66 7.11 99.48 0.71 -14.95 16 24 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 25 H -0.29 -15.77 6.86 99.48 0.68 -15.09 16 26 C 0.11 3.87 6.59 86.42 0.57 4.44 16 27 C 0.11 3.39 6.60 86.42 0.57 3.96 16 28 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 30 H 0.06 0.92 6.33 -2.39 -0.02 0.91 16 31 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 32 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 33 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.14 1.66 6.17 -2.91 -0.02 1.64 16 35 H 0.13 2.78 5.83 -2.91 -0.02 2.77 16 36 H 0.16 2.39 3.90 -2.91 -0.01 2.38 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.13 2.13 5.34 -2.39 -0.01 2.12 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.10 3.47 5.42 -2.38 -0.01 3.46 16 41 H 0.29 14.62 8.29 -92.71 -0.77 13.85 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.08 3.20 7.00 -2.39 -0.02 3.19 16 44 H 0.10 3.05 6.99 -2.39 -0.02 3.03 16 45 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -72.53 362.91 4.10 -68.43 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.00 Total: 8.26 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 5.98 Total: 22.03 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -4.54 Total: -93.86 kcal Atomic # 8 Polarization: -57.67 SS G_CDS: -0.12 Total: -57.79 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 1.78 Total: 52.92 kcal Total: -72.53 4.10 -68.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219503416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.608 kcal (2) G-P(sol) polarization free energy of solvation -72.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds