Wall clock time and date at job start Tue Mar 31 2020 15:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34492 * 125.56865 * 2 1 4 4 C 1.46691 * 106.32767 * 180.24720 * 3 2 1 5 5 C 1.47259 * 126.94017 * 179.75294 * 4 3 2 6 6 O 1.21622 * 120.00240 * 180.02562 * 5 4 3 7 7 N 1.34782 * 119.99916 * 0.02785 * 5 4 3 8 8 C 1.46506 * 119.99896 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.46832 * 179.97438 * 8 7 5 10 10 C 1.38306 * 119.93095 * 269.72401 * 9 8 7 11 11 C 1.38093 * 120.06625 * 179.72827 * 10 9 8 12 12 C 1.38881 * 119.93530 * 0.56765 * 11 10 9 13 13 O 1.35747 * 120.06943 * 179.68219 * 12 11 10 14 14 C 1.34828 * 116.99731 * 174.48557 * 13 12 11 15 15 H 1.07997 * 120.00191 * 5.06295 * 14 13 12 16 16 C 1.38655 * 120.00232 * 185.05725 * 14 13 12 17 17 N 1.31551 * 120.00262 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 119.99608 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46795 * 90.00309 * 18 16 14 20 20 H 1.48500 * 109.46801 * 210.00051 * 18 16 14 21 21 H 1.48500 * 109.47172 * 330.00129 * 18 16 14 22 22 C 1.38879 * 119.85812 * 359.70752 * 12 11 10 23 23 C 1.38096 * 119.93117 * 359.97438 * 22 12 11 24 24 C 1.36767 * 106.11566 * 359.63499 * 4 3 2 25 25 C 1.50700 * 125.80042 * 180.09209 * 24 4 3 26 26 N 1.34652 * 108.40072 * 0.36580 * 24 4 3 27 27 C 1.46495 * 124.85551 * 179.77945 * 26 24 4 28 28 H 1.08996 * 109.46942 * 89.97601 * 1 2 3 29 29 H 1.08997 * 109.46660 * 209.97297 * 1 2 3 30 30 H 1.09001 * 109.47203 * 329.97326 * 1 2 3 31 31 H 1.08000 * 126.83600 * 359.97438 * 3 2 1 32 32 H 0.96993 * 119.99985 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.46940 * 299.99369 * 8 7 5 34 34 H 1.08993 * 109.47519 * 59.99632 * 8 7 5 35 35 H 1.07999 * 119.95882 * 359.97438 * 10 9 8 36 36 H 1.08003 * 120.03494 * 180.27239 * 11 10 9 37 37 H 0.97001 * 120.00133 * 180.02562 * 17 16 14 38 38 H 1.07998 * 120.03260 * 179.97438 * 22 12 11 39 39 H 1.08002 * 119.96247 * 180.02562 * 23 22 12 40 40 H 1.08996 * 109.47329 * 270.32398 * 25 24 4 41 41 H 1.09008 * 109.47189 * 30.32361 * 25 24 4 42 42 H 1.09002 * 109.47405 * 150.32370 * 25 24 4 43 43 H 1.09000 * 109.47310 * 270.00168 * 27 26 24 44 44 H 1.08998 * 109.47112 * 30.00361 * 27 26 24 45 45 H 1.08996 * 109.47697 * 150.00265 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0940 0.0000 4 6 3.6743 0.6106 -0.0061 5 6 4.8977 1.4302 -0.0134 6 8 5.9892 0.8936 -0.0184 7 7 4.8079 2.7750 -0.0145 8 6 6.0251 3.5904 -0.0223 9 6 5.6516 5.0504 -0.0226 10 6 5.4796 5.7185 -1.2213 11 6 5.1319 7.0549 -1.2248 12 6 4.9663 7.7311 -0.0231 13 8 4.6308 9.0464 -0.0234 14 6 4.3740 9.6129 1.1729 15 1 4.5188 9.0463 2.0809 16 6 3.9241 10.9228 1.2375 17 7 3.6740 11.4756 2.4047 18 14 3.6744 11.9030 -0.3330 19 1 2.2846 11.7117 -0.8201 20 1 3.9092 13.3437 -0.0599 21 1 4.6306 11.4329 -1.3673 22 6 5.1452 7.0588 1.1789 23 6 5.4865 5.7207 1.1758 24 6 3.5998 -0.7550 -0.0009 25 6 4.7722 -1.7019 -0.0022 26 7 2.3008 -1.1098 -0.0005 27 6 1.8099 -2.4901 -0.0002 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3632 -0.8902 0.5134 30 1 -0.3634 0.8897 0.5142 31 1 1.9629 2.1235 -0.0004 32 1 3.9375 3.2029 -0.0108 33 1 6.6179 3.3669 0.8647 34 1 6.6079 3.3647 -0.9152 35 1 5.6136 5.1934 -2.1555 36 1 4.9934 7.5750 -2.1612 37 1 3.3589 12.3919 2.4499 38 1 5.0176 7.5820 2.1151 39 1 5.6254 5.1973 2.1103 40 1 5.0544 -1.9294 -1.0301 41 1 5.6143 -1.2382 0.5117 42 1 4.4959 -2.6230 0.5111 43 1 1.6879 -2.8326 -1.0278 44 1 2.5268 -3.1305 0.5136 45 1 0.8498 -2.5342 0.5138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263899736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:45 Heat of formation + Delta-G solvation = 1.379730 kcal Electronic energy + Delta-G solvation = -26336.875667 eV Core-core repulsion = 22513.675203 eV Total energy + Delta-G solvation = -3823.200463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63473 -39.44587 -38.82228 -36.93554 -34.34002 -33.12835 -32.82558 -32.42684 -30.35595 -30.09409 -29.35268 -27.20748 -25.87505 -25.04686 -24.21779 -22.14015 -21.87306 -20.56458 -20.04704 -18.96561 -17.93822 -17.35736 -17.07158 -16.08280 -15.88761 -15.53684 -15.14944 -14.69068 -14.51287 -14.28664 -14.01379 -13.85140 -13.63147 -13.55470 -13.43466 -13.32732 -13.09038 -12.77981 -12.70708 -12.67692 -12.63273 -12.45417 -12.23663 -12.03856 -11.83959 -11.60085 -11.41565 -10.90244 -10.79882 -10.72396 -10.19232 -9.72567 -9.44162 -8.92475 -8.91553 -8.66654 -8.32311 -8.13241 -7.42546 -6.46592 -4.13387 1.68465 2.02387 2.08157 2.21076 2.54073 3.19060 3.22791 3.37318 3.65534 3.66928 4.19606 4.35282 4.43759 4.50873 4.60520 4.66202 4.79594 4.83953 4.98520 5.05097 5.05506 5.11841 5.24470 5.31877 5.41113 5.43568 5.48593 5.55423 5.62976 5.72034 5.80577 5.82330 5.95664 6.08237 6.14339 6.30757 6.51213 6.64586 6.70688 6.73555 6.89946 6.96600 7.03798 7.18581 7.24720 7.54828 7.74602 7.83661 7.98202 8.51175 8.88227 9.49571 10.60696 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018571 B = 0.002213 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.393476 B =12646.795226 C =13499.755977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.007 3.993 3 C -0.163 4.163 4 C -0.232 4.232 5 C 0.589 3.411 6 O -0.560 6.560 7 N -0.718 5.718 8 C 0.180 3.820 9 C -0.203 4.203 10 C -0.056 4.056 11 C -0.195 4.195 12 C 0.166 3.834 13 O -0.214 6.214 14 C -0.391 4.391 15 H 0.108 0.892 16 C 0.064 3.936 17 N -0.877 5.877 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.224 4.224 23 C -0.053 4.053 24 C 0.101 3.899 25 C -0.091 4.091 26 N -0.443 5.443 27 C 0.066 3.934 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.146 0.854 32 H 0.401 0.599 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.280 0.720 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.180 -26.123 -5.278 27.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 C -0.187 4.187 4 C -0.241 4.241 5 C 0.378 3.622 6 O -0.441 6.441 7 N -0.369 5.369 8 C 0.057 3.943 9 C -0.204 4.204 10 C -0.075 4.075 11 C -0.214 4.214 12 C 0.113 3.887 13 O -0.119 6.119 14 C -0.466 4.466 15 H 0.125 0.875 16 C -0.140 4.140 17 N -0.514 5.514 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.243 4.243 23 C -0.071 4.071 24 C -0.015 4.015 25 C -0.149 4.149 26 N -0.120 5.120 27 C -0.076 4.076 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.164 0.836 32 H 0.236 0.764 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.090 0.910 38 H 0.152 0.848 39 H 0.129 0.871 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.637 -26.418 -5.331 27.346 hybrid contribution -0.720 0.816 -0.364 1.148 sum -5.357 -25.602 -5.695 26.769 Atomic orbital electron populations 1.20326 0.87856 1.03236 1.02629 1.20198 0.93509 0.85497 1.10841 1.21843 0.90928 0.97747 1.08170 1.20137 0.93029 0.92153 1.18809 1.17356 0.87588 0.81757 0.75538 1.90703 1.28698 1.72594 1.52075 1.46057 1.10294 1.05486 1.75032 1.19960 0.86120 0.86381 1.01830 1.19318 1.12823 0.94627 0.93645 1.20544 0.96982 0.93253 0.96751 1.20208 1.10615 0.94541 0.96070 1.19178 0.92212 0.83883 0.93433 1.83573 1.75752 1.18652 1.33879 1.20784 1.45347 0.97695 0.82787 0.87514 1.24484 0.95348 0.95967 0.98179 1.69642 1.43036 1.15048 1.23678 0.86178 0.79564 0.78473 0.82680 1.19834 1.20729 1.18325 1.21276 1.09067 0.95191 0.98752 1.20710 0.96061 0.93722 0.96651 1.20258 0.84525 0.94122 1.02619 1.20548 0.94749 0.96321 1.03247 1.43433 1.05172 1.06359 1.57065 1.22062 1.01470 0.80588 1.03447 0.91061 0.91962 0.89904 0.83626 0.76423 0.91548 0.91574 0.86761 0.86410 0.90960 0.84827 0.87083 0.90627 0.88017 0.92171 0.90726 0.89646 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.06 36.01 0.36 -0.15 16 2 C 0.01 0.07 6.85 -81.86 -0.56 -0.49 16 3 C -0.16 -1.85 10.45 -37.49 -0.39 -2.24 16 4 C -0.23 -3.05 6.29 -103.35 -0.65 -3.70 16 5 C 0.59 8.82 7.81 -12.59 -0.10 8.72 16 6 O -0.56 -9.68 14.82 5.26 0.08 -9.60 16 7 N -0.72 -9.98 5.54 -62.61 -0.35 -10.33 16 8 C 0.18 2.61 5.80 -5.19 -0.03 2.58 16 9 C -0.20 -3.26 5.25 -104.57 -0.55 -3.81 16 10 C -0.06 -0.93 9.69 -39.61 -0.38 -1.31 16 11 C -0.20 -3.72 9.99 -39.40 -0.39 -4.12 16 12 C 0.17 3.71 6.65 -39.11 -0.26 3.45 16 13 O -0.21 -5.52 8.59 0.07 0.00 -5.52 16 14 C -0.39 -10.80 9.95 30.89 0.31 -10.49 16 15 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 16 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 17 N -0.88 -24.96 13.96 55.48 0.77 -24.18 16 18 Si 0.91 21.32 28.62 -169.99 -4.86 16.46 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 22 C -0.22 -4.66 9.17 -39.40 -0.36 -5.03 16 23 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 24 C 0.10 1.15 6.89 -81.89 -0.56 0.58 16 25 C -0.09 -0.86 9.51 36.01 0.34 -0.52 16 26 N -0.44 -4.05 3.09 -115.28 -0.36 -4.40 16 27 C 0.07 0.32 10.61 59.84 0.63 0.95 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.29 6.94 -51.93 -0.36 -0.07 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.15 1.46 7.70 -52.49 -0.40 1.06 16 32 H 0.40 5.13 7.59 -40.82 -0.31 4.82 16 33 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 34 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 36 H 0.12 2.10 8.06 -52.48 -0.42 1.68 16 37 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.13 2.95 5.64 -52.49 -0.30 2.65 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.10 1.17 6.49 -51.92 -0.34 0.84 16 42 H 0.06 0.40 6.92 -51.93 -0.36 0.04 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.31 6.88 -51.93 -0.36 -0.05 16 45 H 0.08 0.28 6.90 -51.93 -0.36 -0.08 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -32.29 377.78 -8.10 -40.38 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.00 Total: 6.71 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -3.08 Total: -15.21 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.07 Total: -38.91 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.08 Total: -15.13 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.86 Total: 16.46 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.29 -8.10 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263899736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.764 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds