Wall clock time and date at job start Tue Mar 31 2020 15:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34492 * 125.56865 * 2 1 4 4 C 1.46691 * 106.32767 * 180.24720 * 3 2 1 5 5 C 1.47259 * 126.94017 * 179.75294 * 4 3 2 6 6 O 1.21622 * 120.00240 * 180.02562 * 5 4 3 7 7 N 1.34782 * 119.99916 * 0.02785 * 5 4 3 8 8 C 1.46506 * 119.99896 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.46832 * 179.97438 * 8 7 5 10 10 C 1.38306 * 119.93095 * 269.72401 * 9 8 7 11 11 C 1.38093 * 120.06625 * 179.72827 * 10 9 8 12 12 C 1.38881 * 119.93530 * 0.56765 * 11 10 9 13 13 O 1.35747 * 120.06943 * 179.68219 * 12 11 10 14 14 C 1.34828 * 116.99731 * 174.48557 * 13 12 11 15 15 H 1.07997 * 120.00191 * 5.06295 * 14 13 12 16 16 C 1.38655 * 120.00232 * 185.05725 * 14 13 12 17 17 N 1.31551 * 120.00262 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 119.99608 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46795 * 90.00309 * 18 16 14 20 20 H 1.48500 * 109.46801 * 210.00051 * 18 16 14 21 21 H 1.48500 * 109.47172 * 330.00129 * 18 16 14 22 22 C 1.38879 * 119.85812 * 359.70752 * 12 11 10 23 23 C 1.38096 * 119.93117 * 359.97438 * 22 12 11 24 24 C 1.36767 * 106.11566 * 359.63499 * 4 3 2 25 25 C 1.50700 * 125.80042 * 180.09209 * 24 4 3 26 26 N 1.34652 * 108.40072 * 0.36580 * 24 4 3 27 27 C 1.46495 * 124.85551 * 179.77945 * 26 24 4 28 28 H 1.08996 * 109.46942 * 89.97601 * 1 2 3 29 29 H 1.08997 * 109.46660 * 209.97297 * 1 2 3 30 30 H 1.09001 * 109.47203 * 329.97326 * 1 2 3 31 31 H 1.08000 * 126.83600 * 359.97438 * 3 2 1 32 32 H 0.96993 * 119.99985 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.46940 * 299.99369 * 8 7 5 34 34 H 1.08993 * 109.47519 * 59.99632 * 8 7 5 35 35 H 1.07999 * 119.95882 * 359.97438 * 10 9 8 36 36 H 1.08003 * 120.03494 * 180.27239 * 11 10 9 37 37 H 0.97001 * 120.00133 * 180.02562 * 17 16 14 38 38 H 1.07998 * 120.03260 * 179.97438 * 22 12 11 39 39 H 1.08002 * 119.96247 * 180.02562 * 23 22 12 40 40 H 1.08996 * 109.47329 * 270.32398 * 25 24 4 41 41 H 1.09008 * 109.47189 * 30.32361 * 25 24 4 42 42 H 1.09002 * 109.47405 * 150.32370 * 25 24 4 43 43 H 1.09000 * 109.47310 * 270.00168 * 27 26 24 44 44 H 1.08998 * 109.47112 * 30.00361 * 27 26 24 45 45 H 1.08996 * 109.47697 * 150.00265 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0940 0.0000 4 6 3.6743 0.6106 -0.0061 5 6 4.8977 1.4302 -0.0134 6 8 5.9892 0.8936 -0.0184 7 7 4.8079 2.7750 -0.0145 8 6 6.0251 3.5904 -0.0223 9 6 5.6516 5.0504 -0.0226 10 6 5.4796 5.7185 -1.2213 11 6 5.1319 7.0549 -1.2248 12 6 4.9663 7.7311 -0.0231 13 8 4.6308 9.0464 -0.0234 14 6 4.3740 9.6129 1.1729 15 1 4.5188 9.0463 2.0809 16 6 3.9241 10.9228 1.2375 17 7 3.6740 11.4756 2.4047 18 14 3.6744 11.9030 -0.3330 19 1 2.2846 11.7117 -0.8201 20 1 3.9092 13.3437 -0.0599 21 1 4.6306 11.4329 -1.3673 22 6 5.1452 7.0588 1.1789 23 6 5.4865 5.7207 1.1758 24 6 3.5998 -0.7550 -0.0009 25 6 4.7722 -1.7019 -0.0022 26 7 2.3008 -1.1098 -0.0005 27 6 1.8099 -2.4901 -0.0002 28 1 -0.3633 0.0004 -1.0276 29 1 -0.3632 -0.8902 0.5134 30 1 -0.3634 0.8897 0.5142 31 1 1.9629 2.1235 -0.0004 32 1 3.9375 3.2029 -0.0108 33 1 6.6179 3.3669 0.8647 34 1 6.6079 3.3647 -0.9152 35 1 5.6136 5.1934 -2.1555 36 1 4.9934 7.5750 -2.1612 37 1 3.3589 12.3919 2.4499 38 1 5.0176 7.5820 2.1151 39 1 5.6254 5.1973 2.1103 40 1 5.0544 -1.9294 -1.0301 41 1 5.6143 -1.2382 0.5117 42 1 4.4959 -2.6230 0.5111 43 1 1.6879 -2.8326 -1.0278 44 1 2.5268 -3.1305 0.5136 45 1 0.8498 -2.5342 0.5138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263899736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:45 Heat of formation + Delta-G solvation = -17.881537 kcal Electronic energy + Delta-G solvation = -26337.710898 eV Core-core repulsion = 22513.675203 eV Total energy + Delta-G solvation = -3824.035695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.39099 -41.00775 -40.10090 -38.54530 -35.61772 -34.44796 -33.79477 -33.54340 -31.88747 -31.50739 -29.99375 -28.24066 -27.31824 -26.11529 -25.37349 -23.71801 -22.82847 -22.04863 -20.97427 -19.93698 -19.74135 -19.10148 -17.99583 -16.93524 -16.82086 -16.65973 -16.56090 -16.14941 -15.77188 -15.69826 -15.51218 -15.25467 -14.92807 -14.43529 -14.33105 -14.29406 -14.13193 -14.06522 -14.00920 -13.78946 -13.45665 -13.31455 -13.14215 -13.10202 -12.95556 -12.59656 -12.55091 -12.46492 -12.34999 -12.27298 -11.93436 -11.30358 -10.97616 -10.83038 -10.05820 -9.83887 -9.49327 -9.09524 -8.92454 -8.50437 -6.23483 0.49384 0.54317 0.76979 1.32622 1.36126 1.43544 1.52792 1.88321 2.28060 2.47868 2.60508 2.83592 3.06215 3.16287 3.82043 3.84045 3.88951 3.96716 4.01232 4.13932 4.17605 4.35541 4.39498 4.44287 4.51432 4.54332 4.64583 4.71973 4.74543 4.75875 4.82160 4.83204 4.92720 4.95618 5.09493 5.14543 5.21964 5.32753 5.34481 5.52483 5.55683 5.71053 5.78734 5.84915 5.88023 6.13704 6.18972 6.37281 6.72148 6.83590 7.38639 7.56376 8.60869 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018571 B = 0.002213 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.393476 B =12646.795226 C =13499.755977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.011 3.989 3 C -0.187 4.187 4 C -0.268 4.268 5 C 0.586 3.414 6 O -0.589 6.589 7 N -0.714 5.714 8 C 0.185 3.815 9 C -0.173 4.173 10 C -0.046 4.046 11 C -0.190 4.190 12 C 0.129 3.871 13 O -0.241 6.241 14 C -0.400 4.400 15 H 0.082 0.918 16 C 0.010 3.990 17 N -0.922 5.922 18 Si 0.971 3.029 19 H -0.265 1.265 20 H -0.269 1.269 21 H -0.262 1.262 22 C -0.237 4.237 23 C -0.051 4.051 24 C 0.095 3.905 25 C -0.087 4.087 26 N -0.439 5.439 27 C 0.055 3.945 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.407 0.593 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.132 0.868 37 H 0.285 0.715 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.150 -29.271 -7.249 30.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.211 4.211 4 C -0.278 4.278 5 C 0.377 3.623 6 O -0.472 6.472 7 N -0.365 5.365 8 C 0.062 3.938 9 C -0.174 4.174 10 C -0.064 4.064 11 C -0.209 4.209 12 C 0.080 3.920 13 O -0.148 6.148 14 C -0.476 4.476 15 H 0.100 0.900 16 C -0.188 4.188 17 N -0.562 5.562 18 Si 0.793 3.207 19 H -0.189 1.189 20 H -0.193 1.193 21 H -0.186 1.186 22 C -0.256 4.256 23 C -0.070 4.070 24 C -0.023 4.023 25 C -0.144 4.144 26 N -0.115 5.115 27 C -0.084 4.084 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.167 0.833 32 H 0.242 0.758 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.170 0.830 36 H 0.150 0.850 37 H 0.095 0.905 38 H 0.128 0.872 39 H 0.150 0.850 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.117 0.883 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.623 -29.619 -7.308 31.021 hybrid contribution -0.366 1.354 0.231 1.422 sum -5.989 -28.265 -7.077 29.747 Atomic orbital electron populations 1.20426 0.85370 1.04403 1.03639 1.20709 0.95005 0.85196 1.08833 1.22001 0.90557 0.98752 1.09775 1.20184 0.92987 0.93129 1.21495 1.17665 0.87937 0.81889 0.74822 1.90680 1.29880 1.73064 1.53623 1.45922 1.10221 1.05344 1.74984 1.19892 0.86526 0.84967 1.02429 1.19553 1.09432 0.95377 0.93025 1.20937 0.94980 0.92132 0.98360 1.20506 1.09571 0.95458 0.95400 1.19714 0.93694 0.83398 0.95208 1.83521 1.78407 1.20438 1.32462 1.20712 1.45775 0.98086 0.83048 0.90013 1.25294 0.95290 0.96899 1.01358 1.69726 1.45153 1.15768 1.25550 0.85216 0.79549 0.77411 0.78543 1.18950 1.19329 1.18643 1.21256 1.10134 0.96577 0.97635 1.20905 0.95264 0.92370 0.98424 1.20525 0.85977 0.93927 1.01889 1.20514 0.93353 0.96964 1.03599 1.43727 1.04345 1.07978 1.55442 1.22433 1.02739 0.78316 1.04954 0.90011 0.89940 0.89641 0.83290 0.75759 0.91520 0.90632 0.83002 0.84959 0.90534 0.87189 0.85041 0.90138 0.90450 0.89207 0.89289 0.88277 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.06 71.24 0.72 -0.05 16 2 C 0.01 0.19 6.85 40.98 0.28 0.47 16 3 C -0.19 -4.04 10.45 23.62 0.25 -3.79 16 4 C -0.27 -6.84 6.29 -19.04 -0.12 -6.96 16 5 C 0.59 17.14 7.81 86.61 0.68 17.81 16 6 O -0.59 -20.13 14.82 -4.10 -0.06 -20.19 16 7 N -0.71 -18.77 5.54 -470.26 -2.61 -21.37 16 8 C 0.18 4.94 5.80 85.63 0.50 5.43 16 9 C -0.17 -5.16 5.25 -19.83 -0.10 -5.26 16 10 C -0.05 -1.36 9.69 22.25 0.22 -1.15 16 11 C -0.19 -6.98 9.99 22.39 0.22 -6.76 16 12 C 0.13 5.90 6.65 22.58 0.15 6.05 16 13 O -0.24 -12.87 8.59 -22.68 -0.19 -13.06 16 14 C -0.40 -23.30 9.95 67.92 0.68 -22.62 16 15 H 0.08 4.99 5.44 -2.91 -0.02 4.98 16 16 C 0.01 0.59 5.49 84.83 0.47 1.05 16 17 N -0.92 -54.69 13.96 21.61 0.30 -54.38 16 18 Si 0.97 44.92 28.62 68.60 1.96 46.88 16 19 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 22 C -0.24 -10.19 9.17 22.39 0.21 -9.98 16 23 C -0.05 -1.75 9.69 22.25 0.22 -1.53 16 24 C 0.10 2.01 6.89 41.78 0.29 2.30 16 25 C -0.09 -1.51 9.51 71.24 0.68 -0.83 16 26 N -0.44 -6.87 3.09 -518.64 -1.60 -8.47 16 27 C 0.06 0.33 10.61 127.77 1.36 1.68 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.45 6.94 -2.39 -0.02 0.44 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.15 2.89 7.70 -2.91 -0.02 2.87 16 32 H 0.41 9.81 7.59 -92.71 -0.70 9.11 16 33 H 0.07 1.84 8.09 -2.39 -0.02 1.82 16 34 H 0.08 1.95 8.08 -2.39 -0.02 1.93 16 35 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 36 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.29 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.11 5.23 5.64 -2.91 -0.02 5.22 16 39 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.76 6.49 -2.38 -0.02 1.74 16 42 H 0.09 0.96 6.92 -2.39 -0.02 0.94 16 43 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.10 0.34 6.88 -2.39 -0.02 0.32 16 45 H 0.10 0.23 6.90 -2.39 -0.02 0.22 16 Total: -1.00 -73.80 377.78 4.79 -69.01 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.32 Total: 25.74 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 6.67 Total: -24.14 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -3.91 Total: -84.23 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.26 Total: -33.26 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.96 Total: 46.88 kcal Total: -73.80 4.79 -69.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263899736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.125 kcal (2) G-P(sol) polarization free energy of solvation -73.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds