Wall clock time and date at job start Tue Mar 31 2020 15:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30169 * 126.79985 * 2 1 4 4 O 1.20931 * 111.60594 * 180.02562 * 3 2 1 5 5 C 1.34032 * 111.56171 * 359.75787 * 4 3 2 6 6 C 1.50707 * 126.77589 * 180.28901 * 5 4 3 7 7 C 1.35444 * 106.45022 * 0.38192 * 5 4 3 8 8 C 1.50710 * 128.00994 * 179.91012 * 7 5 4 9 9 C 1.52998 * 109.47126 * 269.67837 * 8 7 5 10 10 H 1.08997 * 109.47070 * 305.00518 * 9 8 7 11 11 C 1.52992 * 109.47158 * 184.99826 * 9 8 7 12 12 N 1.46500 * 109.47021 * 64.99979 * 9 8 7 13 13 C 1.34780 * 120.00227 * 205.00180 * 12 9 8 14 14 O 1.21592 * 119.99705 * 359.97438 * 13 12 9 15 15 C 1.47642 * 120.00140 * 180.02562 * 13 12 9 16 16 C 1.40014 * 119.89289 * 179.97438 * 15 13 12 17 17 C 1.36314 * 120.10542 * 180.27327 * 16 15 13 18 18 C 1.40892 * 119.89099 * 359.50150 * 17 16 15 19 19 C 1.41107 * 120.10345 * 180.22549 * 18 17 16 20 20 H 1.07997 * 120.00225 * 205.24410 * 19 18 17 21 21 C 1.40226 * 119.99908 * 25.24987 * 19 18 17 22 22 N 1.30649 * 120.00094 * 17.90569 * 21 19 18 23 23 Si 1.86800 * 119.99925 * 197.90839 * 21 19 18 24 24 H 1.48509 * 109.47112 * 94.52575 * 23 21 19 25 25 H 1.48494 * 109.47261 * 214.52265 * 23 21 19 26 26 H 1.48498 * 109.47411 * 334.52525 * 23 21 19 27 27 C 1.40890 * 119.79342 * 0.50234 * 18 17 16 28 28 C 1.36319 * 119.89196 * 359.74472 * 27 18 17 29 29 H 1.09001 * 109.47029 * 269.97472 * 1 2 3 30 30 H 1.08995 * 109.46968 * 29.97884 * 1 2 3 31 31 H 1.08997 * 109.46780 * 149.97901 * 1 2 3 32 32 H 1.08998 * 109.46640 * 270.11185 * 6 5 4 33 33 H 1.08999 * 109.47078 * 30.11277 * 6 5 4 34 34 H 1.09005 * 109.47192 * 150.11387 * 6 5 4 35 35 H 1.09001 * 109.47297 * 149.67779 * 8 7 5 36 36 H 1.09000 * 109.46579 * 29.68071 * 8 7 5 37 37 H 1.08998 * 109.47301 * 60.00253 * 11 9 8 38 38 H 1.09005 * 109.47514 * 180.02562 * 11 9 8 39 39 H 1.09004 * 109.47203 * 299.99868 * 11 9 8 40 40 H 0.97005 * 120.00362 * 24.99518 * 12 9 8 41 41 H 1.07995 * 119.94885 * 0.02562 * 16 15 13 42 42 H 1.08001 * 120.05928 * 179.74637 * 17 16 15 43 43 H 0.96994 * 119.99882 * 180.02562 * 22 21 19 44 44 H 1.07995 * 120.05447 * 179.73521 * 27 18 17 45 45 H 1.07993 * 119.94874 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0044 6 6 4.9022 -1.3695 0.0114 7 6 2.3540 -1.1320 -0.0005 8 6 1.9591 -2.5864 0.0001 9 6 1.8242 -3.0788 -1.4422 10 1 1.1253 -2.4388 -1.9807 11 6 1.3034 -4.5173 -1.4434 12 7 3.1333 -3.0329 -2.0983 13 6 3.2115 -2.9232 -3.4393 14 8 2.1956 -2.8628 -4.1046 15 6 4.5308 -2.8775 -4.1006 16 6 4.6094 -2.7640 -5.4939 17 6 5.8252 -2.7270 -6.1094 18 6 7.0038 -2.7926 -5.3402 19 6 8.2647 -2.7499 -5.9723 20 1 9.1250 -3.1916 -5.4916 21 6 8.4006 -2.1339 -7.2247 22 7 7.4816 -1.3083 -7.6498 23 14 9.8958 -2.4936 -8.2851 24 1 9.5741 -3.5840 -9.2407 25 1 10.2742 -1.2711 -9.0383 26 1 11.0276 -2.9119 -7.4195 27 6 6.9196 -2.9068 -3.9385 28 6 5.6993 -2.9482 -3.3324 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 5.2202 -1.5549 -1.0145 33 1 5.6637 -0.7850 0.5278 34 1 4.7628 -2.3202 0.5261 35 1 1.0055 -2.7038 0.5148 36 1 2.7233 -3.1701 0.5134 37 1 0.3294 -4.5515 -0.9552 38 1 1.2077 -4.8684 -2.4709 39 1 2.0024 -5.1573 -0.9048 40 1 3.9438 -3.0813 -1.5676 41 1 3.7055 -2.7097 -6.0823 42 1 5.8849 -2.6436 -7.1845 43 1 7.5755 -0.8825 -8.5162 44 1 7.8203 -2.9617 -3.3452 45 1 5.6336 -3.0361 -2.2580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270320903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:44 Heat of formation + Delta-G solvation = 18.525374 kcal Electronic energy + Delta-G solvation = -27844.584332 eV Core-core repulsion = 24022.127359 eV Total energy + Delta-G solvation = -3822.456973 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.87066 -39.36243 -37.41557 -36.35980 -34.45353 -33.91292 -33.32358 -31.47649 -29.98679 -29.31010 -28.82840 -28.35612 -26.68354 -25.90221 -22.74494 -21.89348 -21.20443 -20.44269 -20.16951 -19.64416 -17.68116 -17.53728 -17.08604 -16.69965 -15.85648 -15.37945 -14.74159 -14.36084 -14.21644 -14.08312 -13.87385 -13.53623 -13.46089 -13.28161 -13.07642 -13.01449 -12.80222 -12.69982 -12.43810 -12.24501 -12.21550 -12.11535 -11.81593 -11.67140 -11.40839 -11.26634 -11.10010 -10.97432 -10.87053 -10.65164 -10.05554 -9.81484 -9.55703 -9.36139 -9.09983 -8.96468 -8.62391 -7.72677 -7.58794 -7.03350 -4.61827 1.50485 2.20018 2.21957 2.90356 2.95139 2.98334 3.00837 3.13675 3.72955 3.73650 3.86878 4.15343 4.41178 4.55381 4.72542 4.77543 4.92273 5.14255 5.22376 5.32862 5.35050 5.40493 5.44631 5.54957 5.56752 5.60749 5.65380 5.70923 5.75271 5.84230 5.88320 6.00810 6.11017 6.23420 6.28076 6.31079 6.79070 6.81564 6.96413 7.03670 7.08505 7.41418 7.58158 7.76058 7.85814 8.03006 8.23127 8.31982 8.41428 8.61258 8.73487 9.07462 9.88915 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016994 B = 0.003033 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.272095 B = 9229.324243 C = 9856.178617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.022 3.978 3 N -0.369 5.369 4 O 0.097 5.903 5 C -0.018 4.018 6 C -0.087 4.087 7 C -0.200 4.200 8 C -0.047 4.047 9 C 0.148 3.852 10 H 0.085 0.915 11 C -0.162 4.162 12 N -0.737 5.737 13 C 0.572 3.428 14 O -0.572 6.572 15 C -0.283 4.283 16 C -0.036 4.036 17 C -0.181 4.181 18 C 0.129 3.871 19 C -0.444 4.444 20 H 0.085 0.915 21 C 0.074 3.926 22 N -0.768 5.768 23 Si 0.913 3.087 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.259 1.259 27 C -0.234 4.234 28 C -0.052 4.052 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.392 0.608 41 H 0.099 0.901 42 H 0.119 0.881 43 H 0.287 0.713 44 H 0.097 0.903 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 -2.547 14.215 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.137 4.137 3 N -0.075 5.075 4 O 0.032 5.968 5 C -0.082 4.082 6 C -0.144 4.144 7 C -0.204 4.204 8 C -0.086 4.086 9 C 0.043 3.957 10 H 0.103 0.897 11 C -0.220 4.220 12 N -0.391 5.391 13 C 0.366 3.634 14 O -0.453 6.453 15 C -0.287 4.287 16 C -0.055 4.055 17 C -0.201 4.201 18 C 0.126 3.874 19 C -0.471 4.471 20 H 0.103 0.897 21 C -0.148 4.148 22 N -0.391 5.391 23 Si 0.737 3.263 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.183 1.183 27 C -0.253 4.253 28 C -0.071 4.071 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.227 0.773 41 H 0.117 0.883 42 H 0.137 0.863 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.330 -0.996 13.553 15.440 hybrid contribution 0.976 -0.743 -0.284 1.259 sum -6.354 -1.738 13.269 14.815 Atomic orbital electron populations 1.20150 0.86203 1.03912 1.02975 1.23394 0.98785 0.88586 1.02902 1.73817 0.89338 1.24035 1.20317 1.84794 1.21542 1.22580 1.67860 1.24183 0.98127 0.83778 1.02079 1.20551 0.90387 0.98495 1.04941 1.20788 0.91643 0.97265 1.10677 1.20239 1.02844 0.88581 0.96901 1.20781 0.86842 0.96658 0.91443 0.89720 1.22186 1.00547 0.96305 1.03004 1.46033 1.07664 1.77790 1.07590 1.18597 0.89872 0.74055 0.80827 1.90635 1.37731 1.52605 1.64349 1.18916 0.90388 1.25086 0.94340 1.20475 0.97176 0.95199 0.92675 1.21003 0.91105 1.08022 0.99921 1.17773 0.93331 0.85479 0.90865 1.19846 0.95662 1.30369 1.01251 0.89709 1.26105 0.98125 0.92653 0.97901 1.69750 1.33001 1.17431 1.18938 0.86205 0.81119 0.79101 0.79893 1.18987 1.19979 1.18254 1.20659 0.95549 1.14425 0.94677 1.20337 0.92826 0.97736 0.96223 0.90381 0.90607 0.90006 0.88481 0.89469 0.89130 0.89231 0.90183 0.92089 0.91618 0.92547 0.77250 0.88257 0.86292 0.90147 0.88453 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.39 36.01 0.37 -0.37 16 2 C 0.02 0.30 7.33 -82.10 -0.60 -0.30 16 3 N -0.37 -5.77 12.07 33.42 0.40 -5.36 16 4 O 0.10 1.46 11.20 17.19 0.19 1.65 16 5 C -0.02 -0.23 7.48 -35.30 -0.26 -0.50 16 6 C -0.09 -0.84 9.06 36.01 0.33 -0.51 16 7 C -0.20 -2.47 5.30 -104.42 -0.55 -3.03 16 8 C -0.05 -0.46 5.09 -27.88 -0.14 -0.61 16 9 C 0.15 1.91 2.56 -67.94 -0.17 1.74 16 10 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 11 C -0.16 -1.84 9.48 37.15 0.35 -1.49 16 12 N -0.74 -11.41 4.74 -54.82 -0.26 -11.67 16 13 C 0.57 11.82 7.73 -12.42 -0.10 11.73 16 14 O -0.57 -13.53 15.99 5.28 0.08 -13.44 16 15 C -0.28 -6.30 5.89 -104.73 -0.62 -6.92 16 16 C -0.04 -0.87 9.52 -39.61 -0.38 -1.25 16 17 C -0.18 -4.58 8.63 -39.27 -0.34 -4.92 16 18 C 0.13 3.21 5.57 -106.80 -0.59 2.61 16 19 C -0.44 -10.85 9.04 -37.75 -0.34 -11.19 16 20 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 21 C 0.07 1.72 5.13 -17.31 -0.09 1.64 16 22 N -0.77 -18.73 11.00 55.56 0.61 -18.12 16 23 Si 0.91 17.26 29.60 -169.99 -5.03 12.23 16 24 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 25 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 26 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 27 C -0.23 -5.18 9.73 -39.27 -0.38 -5.56 16 28 C -0.05 -1.05 9.34 -39.61 -0.37 -1.42 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.10 1.10 5.82 -51.93 -0.30 0.80 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.64 7.44 -51.93 -0.39 0.26 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.64 7.44 -51.93 -0.39 0.26 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.39 5.23 4.53 -40.82 -0.19 5.05 16 41 H 0.10 2.41 7.63 -52.49 -0.40 2.01 16 42 H 0.12 3.09 6.20 -52.49 -0.33 2.77 16 43 H 0.29 6.32 8.29 -40.82 -0.34 5.99 16 44 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 45 H 0.09 1.38 4.95 -52.49 -0.26 1.12 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -30.50 374.18 -8.24 -38.75 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.99 Total: 10.68 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -3.89 Total: -20.35 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.75 Total: -35.15 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.28 Total: -11.79 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.50 -8.24 -38.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270320903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.272 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds