Wall clock time and date at job start Tue Mar 31 2020 15:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30169 * 126.79985 * 2 1 4 4 O 1.20931 * 111.60594 * 180.02562 * 3 2 1 5 5 C 1.34032 * 111.56171 * 359.75787 * 4 3 2 6 6 C 1.50707 * 126.77589 * 180.28901 * 5 4 3 7 7 C 1.35444 * 106.45022 * 0.38192 * 5 4 3 8 8 C 1.50710 * 128.00994 * 179.91012 * 7 5 4 9 9 C 1.52998 * 109.47126 * 269.67837 * 8 7 5 10 10 H 1.08997 * 109.47070 * 305.00518 * 9 8 7 11 11 C 1.52992 * 109.47158 * 184.99826 * 9 8 7 12 12 N 1.46500 * 109.47021 * 64.99979 * 9 8 7 13 13 C 1.34780 * 120.00227 * 205.00180 * 12 9 8 14 14 O 1.21592 * 119.99705 * 359.97438 * 13 12 9 15 15 C 1.47642 * 120.00140 * 180.02562 * 13 12 9 16 16 C 1.40014 * 119.89289 * 179.97438 * 15 13 12 17 17 C 1.36314 * 120.10542 * 180.27327 * 16 15 13 18 18 C 1.40892 * 119.89099 * 359.50150 * 17 16 15 19 19 C 1.41107 * 120.10345 * 180.22549 * 18 17 16 20 20 H 1.07997 * 120.00225 * 205.24410 * 19 18 17 21 21 C 1.40226 * 119.99908 * 25.24987 * 19 18 17 22 22 N 1.30649 * 120.00094 * 17.90569 * 21 19 18 23 23 Si 1.86800 * 119.99925 * 197.90839 * 21 19 18 24 24 H 1.48509 * 109.47112 * 94.52575 * 23 21 19 25 25 H 1.48494 * 109.47261 * 214.52265 * 23 21 19 26 26 H 1.48498 * 109.47411 * 334.52525 * 23 21 19 27 27 C 1.40890 * 119.79342 * 0.50234 * 18 17 16 28 28 C 1.36319 * 119.89196 * 359.74472 * 27 18 17 29 29 H 1.09001 * 109.47029 * 269.97472 * 1 2 3 30 30 H 1.08995 * 109.46968 * 29.97884 * 1 2 3 31 31 H 1.08997 * 109.46780 * 149.97901 * 1 2 3 32 32 H 1.08998 * 109.46640 * 270.11185 * 6 5 4 33 33 H 1.08999 * 109.47078 * 30.11277 * 6 5 4 34 34 H 1.09005 * 109.47192 * 150.11387 * 6 5 4 35 35 H 1.09001 * 109.47297 * 149.67779 * 8 7 5 36 36 H 1.09000 * 109.46579 * 29.68071 * 8 7 5 37 37 H 1.08998 * 109.47301 * 60.00253 * 11 9 8 38 38 H 1.09005 * 109.47514 * 180.02562 * 11 9 8 39 39 H 1.09004 * 109.47203 * 299.99868 * 11 9 8 40 40 H 0.97005 * 120.00362 * 24.99518 * 12 9 8 41 41 H 1.07995 * 119.94885 * 0.02562 * 16 15 13 42 42 H 1.08001 * 120.05928 * 179.74637 * 17 16 15 43 43 H 0.96994 * 119.99882 * 180.02562 * 22 21 19 44 44 H 1.07995 * 120.05447 * 179.73521 * 27 18 17 45 45 H 1.07993 * 119.94874 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0044 6 6 4.9022 -1.3695 0.0114 7 6 2.3540 -1.1320 -0.0005 8 6 1.9591 -2.5864 0.0001 9 6 1.8242 -3.0788 -1.4422 10 1 1.1253 -2.4388 -1.9807 11 6 1.3034 -4.5173 -1.4434 12 7 3.1333 -3.0329 -2.0983 13 6 3.2115 -2.9232 -3.4393 14 8 2.1956 -2.8628 -4.1046 15 6 4.5308 -2.8775 -4.1006 16 6 4.6094 -2.7640 -5.4939 17 6 5.8252 -2.7270 -6.1094 18 6 7.0038 -2.7926 -5.3402 19 6 8.2647 -2.7499 -5.9723 20 1 9.1250 -3.1916 -5.4916 21 6 8.4006 -2.1339 -7.2247 22 7 7.4816 -1.3083 -7.6498 23 14 9.8958 -2.4936 -8.2851 24 1 9.5741 -3.5840 -9.2407 25 1 10.2742 -1.2711 -9.0383 26 1 11.0276 -2.9119 -7.4195 27 6 6.9196 -2.9068 -3.9385 28 6 5.6993 -2.9482 -3.3324 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 5.2202 -1.5549 -1.0145 33 1 5.6637 -0.7850 0.5278 34 1 4.7628 -2.3202 0.5261 35 1 1.0055 -2.7038 0.5148 36 1 2.7233 -3.1701 0.5134 37 1 0.3294 -4.5515 -0.9552 38 1 1.2077 -4.8684 -2.4709 39 1 2.0024 -5.1573 -0.9048 40 1 3.9438 -3.0813 -1.5676 41 1 3.7055 -2.7097 -6.0823 42 1 5.8849 -2.6436 -7.1845 43 1 7.5755 -0.8825 -8.5162 44 1 7.8203 -2.9617 -3.3452 45 1 5.6336 -3.0361 -2.2580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270320903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:43 Heat of formation + Delta-G solvation = 1.545623 kcal Electronic energy + Delta-G solvation = -27845.320629 eV Core-core repulsion = 24022.127359 eV Total energy + Delta-G solvation = -3823.193270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.87602 -40.89962 -39.05353 -37.64420 -35.68819 -35.53639 -34.29514 -32.85292 -31.75399 -30.96772 -29.68603 -29.25041 -27.67513 -27.51712 -24.19463 -23.23858 -22.72876 -21.75563 -21.31175 -20.99657 -19.35833 -18.74810 -18.43774 -17.88283 -17.14212 -17.07312 -15.91768 -15.80126 -15.62959 -15.30975 -15.23489 -14.93731 -14.45275 -14.35108 -14.25480 -14.15853 -14.02035 -13.76438 -13.70260 -13.48638 -13.31580 -13.19237 -13.05883 -12.94481 -12.83126 -12.63810 -12.56561 -12.34595 -12.04673 -11.83584 -11.72059 -11.34446 -11.12994 -10.80406 -10.65668 -10.13795 -9.91786 -9.55205 -9.39328 -8.78376 -6.46929 0.46352 0.52743 1.16383 1.24284 1.38115 1.43174 1.53715 2.13626 2.18948 2.24660 2.42923 2.81306 3.26726 3.54597 3.70890 3.85076 3.88152 4.03633 4.26597 4.29894 4.35720 4.38031 4.41418 4.48751 4.63527 4.64965 4.67003 4.75654 4.85195 4.89532 4.91028 4.92606 4.98701 5.03019 5.12840 5.15014 5.23356 5.27350 5.35050 5.38587 5.59995 5.70682 5.79910 5.98037 6.03090 6.21328 6.57647 6.76811 6.78209 6.91587 7.32909 7.50757 8.16919 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016994 B = 0.003033 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.272095 B = 9229.324243 C = 9856.178617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.013 3.987 3 N -0.407 5.407 4 O 0.070 5.930 5 C -0.027 4.027 6 C -0.089 4.089 7 C -0.207 4.207 8 C -0.037 4.037 9 C 0.145 3.855 10 H 0.056 0.944 11 C -0.156 4.156 12 N -0.716 5.716 13 C 0.570 3.430 14 O -0.609 6.609 15 C -0.293 4.293 16 C -0.053 4.053 17 C -0.203 4.203 18 C 0.101 3.899 19 C -0.472 4.472 20 H 0.094 0.906 21 C 0.033 3.967 22 N -0.806 5.806 23 Si 0.988 3.012 24 H -0.264 1.264 25 H -0.269 1.269 26 H -0.249 1.249 27 C -0.241 4.241 28 C -0.037 4.037 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.030 0.970 39 H 0.077 0.923 40 H 0.405 0.595 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.294 0.706 44 H 0.121 0.879 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.694 -4.181 17.139 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 N -0.117 5.117 4 O 0.010 5.990 5 C -0.090 4.090 6 C -0.146 4.146 7 C -0.211 4.211 8 C -0.075 4.075 9 C 0.040 3.960 10 H 0.074 0.926 11 C -0.214 4.214 12 N -0.369 5.369 13 C 0.363 3.637 14 O -0.494 6.494 15 C -0.298 4.298 16 C -0.073 4.073 17 C -0.222 4.222 18 C 0.098 3.902 19 C -0.499 4.499 20 H 0.112 0.888 21 C -0.185 4.185 22 N -0.430 5.430 23 Si 0.807 3.193 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.172 1.172 27 C -0.260 4.260 28 C -0.056 4.056 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.049 0.951 39 H 0.096 0.904 40 H 0.243 0.757 41 H 0.103 0.897 42 H 0.117 0.883 43 H 0.105 0.895 44 H 0.139 0.861 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.674 -2.641 16.537 18.027 hybrid contribution 0.651 -0.215 -1.106 1.302 sum -6.023 -2.857 15.430 16.809 Atomic orbital electron populations 1.20305 0.84165 1.04217 1.04627 1.24079 1.00337 0.88702 1.01463 1.73812 0.89877 1.25559 1.22474 1.84742 1.21575 1.24054 1.68651 1.24875 0.99730 0.83165 1.01225 1.20756 0.89332 0.99957 1.04553 1.21159 0.91203 0.98309 1.10441 1.20317 1.05592 0.86876 0.94713 1.20992 0.84624 0.97568 0.92792 0.92602 1.22133 1.02798 0.94962 1.01541 1.45867 1.09699 1.75558 1.05760 1.18426 0.88584 0.74141 0.82533 1.90616 1.38610 1.54447 1.65712 1.19232 0.92399 1.24375 0.93775 1.20533 0.96348 0.96205 0.94209 1.20908 0.92040 1.10043 0.99239 1.18141 0.93349 0.86215 0.92476 1.20164 0.95851 1.31345 1.02575 0.88781 1.27019 1.01045 0.91763 0.98707 1.69816 1.35060 1.18424 1.19689 0.85096 0.77372 0.78880 0.77905 1.18825 1.19383 1.17169 1.20966 0.97304 1.13989 0.93775 1.20699 0.91114 0.95213 0.98548 0.87939 0.91306 0.88696 0.89939 0.88013 0.85680 0.86205 0.87115 0.89072 0.95055 0.90420 0.75710 0.89674 0.88279 0.89530 0.86117 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.39 71.24 0.74 -0.63 16 2 C 0.01 0.33 7.33 43.58 0.32 0.65 16 3 N -0.41 -12.73 12.07 -49.55 -0.60 -13.33 16 4 O 0.07 2.12 11.20 71.70 0.80 2.92 16 5 C -0.03 -0.63 7.48 25.04 0.19 -0.44 16 6 C -0.09 -1.42 9.06 71.24 0.65 -0.77 16 7 C -0.21 -4.59 5.30 -19.73 -0.10 -4.69 16 8 C -0.04 -0.56 5.09 29.85 0.15 -0.41 16 9 C 0.14 3.33 2.56 44.99 0.12 3.44 16 10 H 0.06 1.65 7.58 -2.39 -0.02 1.63 16 11 C -0.16 -3.04 9.48 71.98 0.68 -2.35 16 12 N -0.72 -20.49 4.74 -445.60 -2.11 -22.60 16 13 C 0.57 23.41 7.73 86.73 0.67 24.08 16 14 O -0.61 -29.55 15.99 -4.00 -0.06 -29.61 16 15 C -0.29 -13.11 5.89 -19.93 -0.12 -13.23 16 16 C -0.05 -2.73 9.52 22.25 0.21 -2.52 16 17 C -0.20 -10.80 8.63 22.47 0.19 -10.60 16 18 C 0.10 5.15 5.57 -21.28 -0.12 5.04 16 19 C -0.47 -23.38 9.04 23.46 0.21 -23.17 16 20 H 0.09 4.32 7.91 -2.91 -0.02 4.30 16 21 C 0.03 1.56 5.13 85.35 0.44 2.00 16 22 N -0.81 -40.75 11.00 21.87 0.24 -40.51 16 23 Si 0.99 35.39 29.60 68.60 2.03 37.42 16 24 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 25 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 26 H -0.25 -8.42 7.11 99.48 0.71 -7.71 16 27 C -0.24 -10.44 9.73 22.47 0.22 -10.22 16 28 C -0.04 -1.43 9.34 22.25 0.21 -1.22 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.59 5.82 -2.39 -0.01 1.57 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.12 1.09 7.44 -2.38 -0.02 1.07 16 35 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 1.07 7.44 -2.39 -0.02 1.05 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.40 9.26 4.53 -92.70 -0.42 8.84 16 41 H 0.09 4.45 7.63 -2.91 -0.02 4.43 16 42 H 0.10 5.54 6.20 -2.91 -0.02 5.52 16 43 H 0.29 13.40 8.29 -92.71 -0.77 12.63 16 44 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 45 H 0.14 3.78 4.95 -2.91 -0.01 3.77 16 Total: -1.00 -72.12 374.18 5.56 -66.56 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: 0.61 Total: 34.21 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 4.65 Total: -35.05 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -2.47 Total: -76.44 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: 0.74 Total: -26.69 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 2.03 Total: 37.42 kcal Total: -72.12 5.56 -66.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270320903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.106 kcal (2) G-P(sol) polarization free energy of solvation -72.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds