Wall clock time and date at job start Tue Mar 31 2020 15:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35322 * 126.12369 * 2 1 4 4 C 1.50701 * 126.03975 * 0.02562 * 3 2 1 5 5 C 1.53003 * 109.46963 * 85.00240 * 4 3 2 6 6 C 1.50701 * 109.46963 * 179.97438 * 5 4 3 7 7 O 1.20831 * 119.99807 * 359.97438 * 6 5 4 8 8 O 1.34227 * 119.99921 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99880 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47254 * 179.97438 * 9 8 6 11 11 C 1.38630 * 119.74764 * 269.73145 * 10 9 8 12 12 C 1.37621 * 120.24485 * 179.72134 * 11 10 9 13 13 C 1.40711 * 119.74678 * 0.56681 * 12 11 10 14 14 C 1.41403 * 120.24614 * 179.68644 * 13 12 11 15 15 H 1.07999 * 119.99670 * 155.30656 * 14 13 12 16 16 C 1.39943 * 119.99909 * 335.30656 * 14 13 12 17 17 N 1.30827 * 119.99627 * 342.23408 * 16 14 13 18 18 Si 1.86795 * 120.00191 * 162.23237 * 16 14 13 19 19 H 1.48499 * 109.46822 * 94.66582 * 18 16 14 20 20 H 1.48496 * 109.47238 * 214.66311 * 18 16 14 21 21 H 1.48497 * 109.46932 * 334.66883 * 18 16 14 22 22 C 1.40713 * 119.51120 * 359.69830 * 13 12 11 23 23 C 1.37619 * 119.74340 * 0.02562 * 22 13 12 24 24 C 1.39871 * 107.91691 * 179.97438 * 3 2 1 25 25 N 1.30835 * 108.20297 * 0.02562 * 24 3 2 26 26 N 1.34948 * 126.13040 * 180.02562 * 2 1 3 27 27 C 1.46499 * 126.03217 * 0.02562 * 26 2 1 28 28 H 1.08997 * 109.47152 * 269.97501 * 1 2 3 29 29 H 1.08998 * 109.47180 * 29.97593 * 1 2 3 30 30 H 1.08997 * 109.46789 * 149.97472 * 1 2 3 31 31 H 1.08997 * 109.46909 * 204.99614 * 4 3 2 32 32 H 1.08998 * 109.47058 * 324.99835 * 4 3 2 33 33 H 1.08997 * 109.46797 * 299.99443 * 5 4 3 34 34 H 1.08999 * 109.47410 * 59.99379 * 5 4 3 35 35 H 1.09004 * 109.47031 * 299.99981 * 9 8 6 36 36 H 1.08999 * 109.47402 * 59.99717 * 9 8 6 37 37 H 1.07993 * 119.87977 * 359.97140 * 11 10 9 38 38 H 1.08002 * 120.12851 * 180.27277 * 12 11 10 39 39 H 0.97003 * 119.99513 * 180.02562 * 17 16 14 40 40 H 1.08004 * 120.12991 * 179.97438 * 22 13 12 41 41 H 1.08001 * 119.87404 * 179.97438 * 23 22 13 42 42 H 1.08006 * 125.89508 * 179.97438 * 24 3 2 43 43 H 1.08997 * 109.47361 * 269.99313 * 27 26 2 44 44 H 1.08995 * 109.47540 * 30.00299 * 27 26 2 45 45 H 1.09009 * 109.46766 * 150.00408 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0931 0.0000 4 6 1.8432 2.5276 0.0005 5 6 1.5678 2.9742 1.4378 6 6 1.1069 4.4090 1.4384 7 8 1.0090 5.0125 0.3962 8 8 0.8049 5.0164 2.5967 9 6 0.3671 6.3988 2.5215 10 6 0.0746 6.9093 3.9089 11 6 -1.2017 6.7801 4.4345 12 6 -1.4787 7.2375 5.7026 13 6 -0.4637 7.8489 6.4615 14 6 -0.7383 8.3286 7.7630 15 1 0.0608 8.4234 8.4833 16 6 -2.0455 8.6806 8.1176 17 7 -2.9383 8.9026 7.1874 18 14 -2.5157 8.8333 9.9189 19 1 -2.3891 10.2502 10.3451 20 1 -3.9190 8.3842 10.1041 21 1 -1.6127 7.9870 10.7396 22 6 0.8267 7.9796 5.9156 23 6 1.0824 7.5097 4.6477 24 6 3.6334 0.6560 0.0006 25 7 3.6334 -0.6523 0.0004 26 7 2.3027 -1.0899 -0.0005 27 6 1.8539 -2.4845 -0.0016 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 2.6184 3.1589 -0.4338 32 1 0.9303 2.6158 -0.5886 33 1 0.7927 2.3430 1.8722 34 1 2.4807 2.8860 2.0269 35 1 1.1524 7.0045 2.0691 36 1 -0.5356 6.4615 1.9139 37 1 -1.9804 6.3152 3.8483 38 1 -2.4725 7.1320 6.1119 39 1 -3.8443 9.1469 7.4332 40 1 1.6131 8.4475 6.4892 41 1 2.0719 7.6093 4.2265 42 1 4.5084 1.2893 0.0004 43 1 1.7424 -2.8312 1.0257 44 1 0.8957 -2.5575 -0.5159 45 1 2.5902 -3.1026 -0.5156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271895454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:02 Heat of formation + Delta-G solvation = -9.145244 kcal Electronic energy + Delta-G solvation = -25885.855731 eV Core-core repulsion = 22062.198871 eV Total energy + Delta-G solvation = -3823.656861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58926 -40.04979 -37.69815 -36.15966 -34.59241 -33.85653 -33.53153 -31.35548 -30.69553 -29.36422 -27.89178 -27.03993 -26.88070 -24.46979 -23.41731 -21.13874 -21.07579 -20.46203 -20.02680 -19.47399 -17.42327 -17.37176 -16.66583 -16.29281 -16.16763 -15.82742 -15.34332 -14.61250 -14.56770 -14.28567 -13.91242 -13.73000 -13.62202 -13.39023 -13.02282 -12.97048 -12.78238 -12.56805 -12.47785 -12.32644 -12.14701 -12.02102 -11.88502 -11.52451 -11.24824 -11.23824 -11.11398 -10.70585 -10.62905 -10.61142 -10.17118 -10.10813 -9.68231 -9.51258 -9.46464 -9.20882 -8.53086 -7.55403 -7.44606 -6.86687 -4.45647 1.58510 2.22799 2.42208 2.51171 2.57713 2.97676 3.01001 3.02867 3.08444 3.46658 3.86005 4.20799 4.35365 4.52596 4.69134 4.74671 4.85486 4.92114 4.94350 5.01659 5.11470 5.20001 5.39950 5.43043 5.49522 5.56405 5.62932 5.69924 5.73421 5.76212 6.02204 6.09579 6.12276 6.26544 6.32222 6.42774 6.74885 6.86954 6.93679 6.98252 7.18939 7.27091 7.46191 7.52367 7.74805 7.96440 8.01617 8.13209 8.19900 8.54402 8.79222 8.87399 10.07543 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.001875 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.635477 B =14928.421221 C =15438.621267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.088 3.912 3 C -0.237 4.237 4 C -0.025 4.025 5 C -0.110 4.110 6 C 0.454 3.546 7 O -0.523 6.523 8 O -0.352 6.352 9 C 0.136 3.864 10 C -0.235 4.235 11 C -0.076 4.076 12 C -0.171 4.171 13 C 0.118 3.882 14 C -0.457 4.457 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.787 5.787 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.230 4.230 23 C -0.064 4.064 24 C 0.057 3.943 25 N -0.301 5.301 26 N -0.376 5.376 27 C 0.101 3.899 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.282 0.718 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.184 0.816 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.312 -17.617 -11.993 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.039 4.039 3 C -0.249 4.249 4 C -0.064 4.064 5 C -0.148 4.148 6 C 0.298 3.702 7 O -0.413 6.413 8 O -0.269 6.269 9 C 0.064 3.936 10 C -0.236 4.236 11 C -0.094 4.094 12 C -0.190 4.190 13 C 0.115 3.885 14 C -0.485 4.485 15 H 0.098 0.902 16 C -0.144 4.144 17 N -0.411 5.411 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.250 4.250 23 C -0.083 4.083 24 C -0.128 4.128 25 N -0.121 5.121 26 N -0.159 5.159 27 C -0.041 4.041 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.137 0.863 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.201 0.799 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.692 -18.543 -12.310 22.746 hybrid contribution -0.770 0.919 0.742 1.410 sum 3.922 -17.624 -11.568 21.443 Atomic orbital electron populations 1.20518 0.87260 1.03960 1.03685 1.20898 0.94550 0.87086 1.01374 1.19766 0.92436 0.95190 1.17460 1.19633 1.02320 0.90043 0.94376 1.21411 1.03913 0.89666 0.99826 1.23744 0.74113 0.90088 0.82292 1.90623 1.50110 1.67026 1.33518 1.86709 1.76026 1.30191 1.33937 1.21696 0.98334 0.76982 0.96625 1.18680 0.95288 1.13370 0.96262 1.20532 0.94465 0.98683 0.95757 1.21292 1.00489 1.02763 0.94435 1.17690 0.90850 0.87491 0.92429 1.19664 0.93812 1.37498 0.97575 0.90188 1.25970 0.96151 0.92482 0.99759 1.69829 1.04651 1.31717 1.34942 0.86280 0.78638 0.79421 0.82330 1.19475 1.19941 1.18313 1.20956 0.98064 1.09986 0.95947 1.20392 0.96035 0.97373 0.94466 1.23809 0.97754 0.91966 0.99318 1.77366 0.96517 1.13059 1.25185 1.48393 1.03984 1.05925 1.57595 1.21827 1.00942 0.77909 1.03400 0.89824 0.89291 0.91200 0.90210 0.90607 0.88212 0.87898 0.92127 0.92074 0.89336 0.86292 0.90675 0.88713 0.89285 0.79942 0.90710 0.89583 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 9.90 36.01 0.36 -0.23 16 2 C 0.09 0.81 6.93 -82.26 -0.57 0.24 16 3 C -0.24 -2.38 5.35 -105.05 -0.56 -2.94 16 4 C -0.03 -0.25 4.72 -27.88 -0.13 -0.38 16 5 C -0.11 -1.21 5.79 -27.88 -0.16 -1.37 16 6 C 0.45 6.94 7.96 36.01 0.29 7.23 16 7 O -0.52 -9.08 15.73 -18.75 -0.30 -9.37 16 8 O -0.35 -6.34 10.20 -39.25 -0.40 -6.74 16 9 C 0.14 2.59 5.58 36.01 0.20 2.79 16 10 C -0.23 -5.19 5.54 -104.33 -0.58 -5.77 16 11 C -0.08 -1.76 9.67 -39.66 -0.38 -2.15 16 12 C -0.17 -4.37 8.70 -38.87 -0.34 -4.71 16 13 C 0.12 3.10 5.57 -106.82 -0.60 2.51 16 14 C -0.46 -11.84 9.05 -37.74 -0.34 -12.18 16 15 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 16 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 17 N -0.79 -19.82 10.97 55.55 0.61 -19.21 16 18 Si 0.91 18.11 29.59 -169.99 -5.03 13.08 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 22 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 23 C -0.06 -1.44 9.67 -39.66 -0.38 -1.83 16 24 C 0.06 0.60 11.96 -17.37 -0.21 0.39 16 25 N -0.30 -3.49 12.58 30.63 0.39 -3.11 16 26 N -0.38 -3.59 4.01 -63.88 -0.26 -3.84 16 27 C 0.10 0.53 11.27 59.85 0.67 1.21 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.54 7.25 -51.93 -0.38 0.16 16 30 H 0.07 0.30 7.08 -51.93 -0.37 -0.07 16 31 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 32 H 0.08 0.77 7.26 -51.93 -0.38 0.39 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 36 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 37 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.12 3.12 6.18 -52.49 -0.32 2.80 16 39 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 40 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 41 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.18 1.43 8.06 -52.48 -0.42 1.01 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.26 7.05 -51.93 -0.37 -0.11 16 45 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 LS Contribution 385.23 15.07 5.81 5.81 Total: -1.00 -31.30 385.23 -8.81 -40.11 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.43 Total: 4.71 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -3.20 Total: -21.43 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.74 Total: -26.16 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.70 Total: -16.11 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.30 -8.81 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271895454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.967 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds