Wall clock time and date at job start Tue Mar 31 2020 15:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35322 * 126.12369 * 2 1 4 4 C 1.50701 * 126.03975 * 0.02562 * 3 2 1 5 5 C 1.53003 * 109.46963 * 85.00240 * 4 3 2 6 6 C 1.50701 * 109.46963 * 179.97438 * 5 4 3 7 7 O 1.20831 * 119.99807 * 359.97438 * 6 5 4 8 8 O 1.34227 * 119.99921 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99880 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47254 * 179.97438 * 9 8 6 11 11 C 1.38630 * 119.74764 * 269.73145 * 10 9 8 12 12 C 1.37621 * 120.24485 * 179.72134 * 11 10 9 13 13 C 1.40711 * 119.74678 * 0.56681 * 12 11 10 14 14 C 1.41403 * 120.24614 * 179.68644 * 13 12 11 15 15 H 1.07999 * 119.99670 * 155.30656 * 14 13 12 16 16 C 1.39943 * 119.99909 * 335.30656 * 14 13 12 17 17 N 1.30827 * 119.99627 * 342.23408 * 16 14 13 18 18 Si 1.86795 * 120.00191 * 162.23237 * 16 14 13 19 19 H 1.48499 * 109.46822 * 94.66582 * 18 16 14 20 20 H 1.48496 * 109.47238 * 214.66311 * 18 16 14 21 21 H 1.48497 * 109.46932 * 334.66883 * 18 16 14 22 22 C 1.40713 * 119.51120 * 359.69830 * 13 12 11 23 23 C 1.37619 * 119.74340 * 0.02562 * 22 13 12 24 24 C 1.39871 * 107.91691 * 179.97438 * 3 2 1 25 25 N 1.30835 * 108.20297 * 0.02562 * 24 3 2 26 26 N 1.34948 * 126.13040 * 180.02562 * 2 1 3 27 27 C 1.46499 * 126.03217 * 0.02562 * 26 2 1 28 28 H 1.08997 * 109.47152 * 269.97501 * 1 2 3 29 29 H 1.08998 * 109.47180 * 29.97593 * 1 2 3 30 30 H 1.08997 * 109.46789 * 149.97472 * 1 2 3 31 31 H 1.08997 * 109.46909 * 204.99614 * 4 3 2 32 32 H 1.08998 * 109.47058 * 324.99835 * 4 3 2 33 33 H 1.08997 * 109.46797 * 299.99443 * 5 4 3 34 34 H 1.08999 * 109.47410 * 59.99379 * 5 4 3 35 35 H 1.09004 * 109.47031 * 299.99981 * 9 8 6 36 36 H 1.08999 * 109.47402 * 59.99717 * 9 8 6 37 37 H 1.07993 * 119.87977 * 359.97140 * 11 10 9 38 38 H 1.08002 * 120.12851 * 180.27277 * 12 11 10 39 39 H 0.97003 * 119.99513 * 180.02562 * 17 16 14 40 40 H 1.08004 * 120.12991 * 179.97438 * 22 13 12 41 41 H 1.08001 * 119.87404 * 179.97438 * 23 22 13 42 42 H 1.08006 * 125.89508 * 179.97438 * 24 3 2 43 43 H 1.08997 * 109.47361 * 269.99313 * 27 26 2 44 44 H 1.08995 * 109.47540 * 30.00299 * 27 26 2 45 45 H 1.09009 * 109.46766 * 150.00408 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0931 0.0000 4 6 1.8432 2.5276 0.0005 5 6 1.5678 2.9742 1.4378 6 6 1.1069 4.4090 1.4384 7 8 1.0090 5.0125 0.3962 8 8 0.8049 5.0164 2.5967 9 6 0.3671 6.3988 2.5215 10 6 0.0746 6.9093 3.9089 11 6 -1.2017 6.7801 4.4345 12 6 -1.4787 7.2375 5.7026 13 6 -0.4637 7.8489 6.4615 14 6 -0.7383 8.3286 7.7630 15 1 0.0608 8.4234 8.4833 16 6 -2.0455 8.6806 8.1176 17 7 -2.9383 8.9026 7.1874 18 14 -2.5157 8.8333 9.9189 19 1 -2.3891 10.2502 10.3451 20 1 -3.9190 8.3842 10.1041 21 1 -1.6127 7.9870 10.7396 22 6 0.8267 7.9796 5.9156 23 6 1.0824 7.5097 4.6477 24 6 3.6334 0.6560 0.0006 25 7 3.6334 -0.6523 0.0004 26 7 2.3027 -1.0899 -0.0005 27 6 1.8539 -2.4845 -0.0016 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 2.6184 3.1589 -0.4338 32 1 0.9303 2.6158 -0.5886 33 1 0.7927 2.3430 1.8722 34 1 2.4807 2.8860 2.0269 35 1 1.1524 7.0045 2.0691 36 1 -0.5356 6.4615 1.9139 37 1 -1.9804 6.3152 3.8483 38 1 -2.4725 7.1320 6.1119 39 1 -3.8443 9.1469 7.4332 40 1 1.6131 8.4475 6.4892 41 1 2.0719 7.6093 4.2265 42 1 4.5084 1.2893 0.0004 43 1 1.7424 -2.8312 1.0257 44 1 0.8957 -2.5575 -0.5159 45 1 2.5902 -3.1026 -0.5156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271895454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:01 Heat of formation + Delta-G solvation = -24.039861 kcal Electronic energy + Delta-G solvation = -25886.501610 eV Core-core repulsion = 22062.198871 eV Total energy + Delta-G solvation = -3824.302740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.28423 -41.35759 -39.48018 -37.55395 -35.66709 -35.40451 -34.17803 -32.64911 -31.87074 -31.21989 -29.16168 -28.12764 -27.52274 -25.80306 -24.68164 -22.94577 -22.00481 -21.77925 -21.47718 -20.17728 -19.26374 -18.59617 -17.63109 -17.59363 -17.20161 -17.06600 -16.50982 -15.90903 -15.73742 -15.58462 -15.17400 -15.04547 -14.46987 -14.26367 -14.15500 -13.94541 -13.84786 -13.75462 -13.55804 -13.38083 -13.25516 -13.13153 -13.02387 -12.90979 -12.76899 -12.65850 -12.39215 -12.19338 -12.04645 -11.62896 -11.59460 -11.44500 -11.35319 -11.26525 -11.02155 -10.18520 -9.42976 -9.33727 -9.22963 -8.68574 -6.38727 0.74970 0.91445 1.11696 1.29434 1.38904 1.43956 1.54391 1.66766 1.74982 2.11130 2.20343 2.73872 3.61523 3.70077 3.80886 3.87632 4.09866 4.12352 4.14794 4.19952 4.27528 4.37650 4.41455 4.49425 4.50620 4.56531 4.63019 4.66383 4.69816 4.75547 4.78455 5.01174 5.05848 5.08390 5.12733 5.25224 5.31252 5.36165 5.40269 5.61927 5.66024 5.73146 5.89939 6.06319 6.15355 6.16284 6.32820 6.64958 6.75641 6.85411 6.89265 6.97923 8.28564 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.001875 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.635477 B =14928.421221 C =15438.621267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.090 3.910 3 C -0.255 4.255 4 C -0.014 4.014 5 C -0.100 4.100 6 C 0.456 3.544 7 O -0.543 6.543 8 O -0.364 6.364 9 C 0.141 3.859 10 C -0.229 4.229 11 C -0.080 4.080 12 C -0.194 4.194 13 C 0.086 3.914 14 C -0.494 4.494 15 H 0.079 0.921 16 C 0.035 3.965 17 N -0.819 5.819 18 Si 0.984 3.016 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.258 1.258 22 C -0.245 4.245 23 C -0.067 4.067 24 C 0.048 3.952 25 N -0.338 5.338 26 N -0.381 5.381 27 C 0.090 3.910 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.290 0.710 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.198 0.802 43 H 0.084 0.916 44 H 0.112 0.888 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.043 -18.963 -12.364 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.039 4.039 3 C -0.266 4.266 4 C -0.053 4.053 5 C -0.138 4.138 6 C 0.301 3.699 7 O -0.434 6.434 8 O -0.281 6.281 9 C 0.068 3.932 10 C -0.230 4.230 11 C -0.099 4.099 12 C -0.213 4.213 13 C 0.084 3.916 14 C -0.522 4.522 15 H 0.097 0.903 16 C -0.181 4.181 17 N -0.444 5.444 18 Si 0.804 3.196 19 H -0.187 1.187 20 H -0.189 1.189 21 H -0.182 1.182 22 C -0.265 4.265 23 C -0.085 4.085 24 C -0.137 4.137 25 N -0.159 5.159 26 N -0.163 5.163 27 C -0.050 4.050 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.135 0.865 42 H 0.214 0.786 43 H 0.103 0.897 44 H 0.130 0.870 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.438 -19.911 -12.702 24.031 hybrid contribution -0.638 1.237 0.681 1.549 sum 3.801 -18.675 -12.021 22.532 Atomic orbital electron populations 1.20640 0.85103 1.05122 1.04563 1.21382 0.95880 0.86795 0.99811 1.19798 0.92541 0.95290 1.18991 1.19501 1.02085 0.90124 0.93570 1.21509 1.04718 0.86654 1.00872 1.24511 0.73086 0.91183 0.81091 1.90619 1.51021 1.67782 1.34003 1.86677 1.76493 1.29367 1.35525 1.21498 0.99116 0.78009 0.94529 1.19014 0.94624 1.12044 0.97367 1.20780 0.95704 0.98229 0.95160 1.21273 0.99971 1.04334 0.95725 1.18056 0.91947 0.88387 0.93234 1.19910 0.94986 1.39388 0.97954 0.90294 1.26823 0.95508 0.91485 1.04289 1.69873 1.05265 1.32190 1.37096 0.85164 0.78481 0.79581 0.76341 1.18663 1.18916 1.18195 1.21170 0.97740 1.10561 0.97020 1.20716 0.97502 0.96480 0.93805 1.24145 0.98658 0.91974 0.98914 1.77303 0.98198 1.13721 1.26676 1.48737 1.03402 1.07344 1.56866 1.22159 1.02198 0.76087 1.04507 0.88936 0.89152 0.89088 0.90764 0.90670 0.86533 0.86721 0.91152 0.91474 0.87428 0.87771 0.89878 0.87971 0.86455 0.78567 0.89747 0.86972 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 9.90 71.24 0.71 -0.20 16 2 C 0.09 1.46 6.93 41.41 0.29 1.75 16 3 C -0.25 -4.73 5.35 -20.14 -0.11 -4.84 16 4 C -0.01 -0.26 4.72 29.85 0.14 -0.12 16 5 C -0.10 -1.97 5.79 29.85 0.17 -1.80 16 6 C 0.46 13.05 7.96 71.24 0.57 13.61 16 7 O -0.54 -17.96 15.73 21.95 0.35 -17.61 16 8 O -0.36 -12.39 10.20 -51.39 -0.52 -12.91 16 9 C 0.14 5.12 5.58 71.24 0.40 5.52 16 10 C -0.23 -9.92 5.54 -19.68 -0.11 -10.03 16 11 C -0.08 -3.73 9.67 22.22 0.21 -3.52 16 12 C -0.19 -10.17 8.70 22.73 0.20 -9.98 16 13 C 0.09 4.66 5.57 -21.29 -0.12 4.54 16 14 C -0.49 -26.34 9.05 23.46 0.21 -26.12 16 15 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 16 C 0.03 1.73 5.14 85.26 0.44 2.16 16 17 N -0.82 -42.13 10.97 21.83 0.24 -41.89 16 18 Si 0.98 37.30 29.59 68.60 2.03 39.33 16 19 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 20 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 21 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 22 C -0.25 -12.05 9.80 22.73 0.22 -11.83 16 23 C -0.07 -2.95 9.67 22.22 0.21 -2.73 16 24 C 0.05 0.96 11.96 85.24 1.02 1.98 16 25 N -0.34 -7.59 12.58 -57.02 -0.72 -8.31 16 26 N -0.38 -6.64 4.01 -356.03 -1.43 -8.07 16 27 C 0.09 0.78 11.27 127.77 1.44 2.22 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.85 7.25 -2.39 -0.02 0.84 16 30 H 0.09 0.47 7.08 -2.39 -0.02 0.45 16 31 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 32 H 0.07 1.39 7.26 -2.39 -0.02 1.37 16 33 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 2.42 8.07 -2.38 -0.02 2.40 16 36 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 37 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.10 5.68 6.18 -2.91 -0.02 5.66 16 39 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 40 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 41 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.20 2.96 8.06 -2.91 -0.02 2.94 16 43 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.11 0.34 7.05 -2.39 -0.02 0.32 16 45 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -68.38 385.23 6.83 -61.55 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.99 Total: 27.30 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 5.90 Total: -39.39 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -1.91 Total: -58.27 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.18 Total: -30.52 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Total: -68.38 6.83 -61.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271895454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.509 kcal (2) G-P(sol) polarization free energy of solvation -68.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds