Wall clock time and date at job start Tue Mar 31 2020 15:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34133 * 126.23769 * 2 1 4 4 C 1.30360 * 108.90010 * 179.97438 * 3 2 1 5 5 C 1.50703 * 125.48323 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47100 * 90.02498 * 5 4 3 7 7 C 1.50705 * 109.47212 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99728 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00108 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99881 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46985 * 179.97438 * 10 9 7 12 12 C 1.50711 * 109.47162 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99388 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99823 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99867 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00242 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47442 * 90.00217 * 16 14 12 18 18 H 1.48504 * 109.47107 * 210.00254 * 16 14 12 19 19 H 1.48504 * 109.47184 * 329.99795 * 16 14 12 20 20 O 1.33994 * 109.03821 * 359.77081 * 4 3 2 21 21 C 1.35121 * 107.71139 * 0.37362 * 20 4 3 22 22 C 1.47826 * 126.58557 * 179.90123 * 21 20 4 23 23 C 1.39568 * 120.14457 * 312.69425 * 22 21 20 24 24 C 1.37955 * 119.85567 * 179.97438 * 23 22 21 25 25 C 1.38359 * 120.14437 * 359.97033 * 24 23 22 26 26 C 1.38356 * 120.29029 * 0.28196 * 25 24 23 27 27 C 1.37958 * 120.14572 * 359.48836 * 26 25 24 28 28 H 1.09009 * 109.47315 * 264.80205 * 1 2 3 29 29 H 1.09000 * 109.47428 * 24.80185 * 1 2 3 30 30 H 1.09002 * 109.46998 * 144.80844 * 1 2 3 31 31 H 1.09002 * 109.47566 * 210.03132 * 5 4 3 32 32 H 1.09002 * 109.47011 * 330.02608 * 5 4 3 33 33 H 1.09001 * 109.47170 * 299.99979 * 6 5 4 34 34 H 1.08996 * 109.47455 * 60.00351 * 6 5 4 35 35 H 0.97001 * 119.99839 * 359.97438 * 9 7 6 36 36 H 1.08998 * 109.47397 * 299.99451 * 10 9 7 37 37 H 1.09002 * 109.47323 * 59.99526 * 10 9 7 38 38 H 1.09001 * 109.47170 * 299.99668 * 11 10 9 39 39 H 1.08996 * 109.47455 * 60.00039 * 11 10 9 40 40 H 0.96999 * 120.00528 * 180.02562 * 15 14 12 41 41 H 1.08008 * 120.07522 * 359.97438 * 23 22 21 42 42 H 1.08003 * 119.92955 * 180.02562 * 24 23 22 43 43 H 1.08000 * 119.85255 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.92468 * 179.71811 * 26 25 24 45 45 H 1.07998 * 120.07523 * 180.25379 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2999 1.0819 0.0000 4 6 3.5443 0.6934 0.0006 5 6 4.7450 1.6041 0.0002 6 6 5.1514 1.9128 1.4426 7 6 6.3518 2.8240 1.4422 8 8 6.8349 3.1901 0.3917 9 7 6.8890 3.2313 2.6092 10 6 8.0562 4.1167 2.6089 11 6 8.4625 4.4255 4.0512 12 6 9.6636 5.3358 4.0509 13 1 10.0937 5.6617 3.1154 14 6 10.2132 5.7523 5.2447 15 7 11.2610 6.5471 5.2445 16 14 9.4686 5.1890 6.8627 17 1 10.1165 3.9236 7.2919 18 1 9.6858 6.2320 7.8973 19 1 8.0116 4.9638 6.6853 20 8 3.5841 -0.6459 0.0060 21 6 2.3097 -1.0950 0.0005 22 6 1.8732 -2.5074 0.0015 23 6 2.4527 -3.4207 -0.8806 24 6 2.0413 -4.7374 -0.8743 25 6 1.0568 -5.1535 0.0044 26 6 0.4746 -4.2521 0.8778 27 6 0.8803 -2.9336 0.8849 28 1 -0.3634 -0.0931 1.0235 29 1 -0.3634 0.9329 -0.4311 30 1 -0.3633 -0.8399 -0.5923 31 1 5.5723 1.1145 -0.5136 32 1 4.4966 2.5326 -0.5139 33 1 4.3241 2.4025 1.9563 34 1 5.3998 0.9844 1.9567 35 1 6.5027 2.9383 3.4494 36 1 8.8834 3.6272 2.0949 37 1 7.8077 5.0453 2.0950 38 1 7.6351 4.9152 4.5648 39 1 8.7108 3.4971 4.5655 40 1 11.6480 6.8399 6.0843 41 1 3.2217 -3.0973 -1.5667 42 1 2.4892 -5.4453 -1.5560 43 1 0.7386 -6.1855 0.0056 44 1 -0.2966 -4.5823 1.5580 45 1 0.4279 -2.2318 1.5700 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272976660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:04 Heat of formation + Delta-G solvation = -10.561963 kcal Electronic energy + Delta-G solvation = -25634.817659 eV Core-core repulsion = 21811.099365 eV Total energy + Delta-G solvation = -3823.718294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.60282 -39.54138 -39.41001 -35.50668 -35.19772 -34.37953 -32.85064 -32.51658 -31.50079 -30.46817 -29.99773 -27.59555 -25.91406 -24.27309 -23.13350 -22.62323 -21.68382 -20.92675 -20.79006 -20.05036 -17.97750 -17.30512 -16.97570 -16.75290 -16.46776 -15.95539 -15.52382 -15.28507 -15.15269 -14.43480 -14.39345 -14.17754 -14.02236 -13.98978 -13.65347 -13.49336 -13.10991 -13.00876 -12.89002 -12.62589 -12.54069 -12.41735 -11.93839 -11.64505 -11.51309 -11.40913 -11.21047 -11.18196 -10.82949 -10.41634 -10.30898 -9.98460 -9.84209 -9.56999 -9.49307 -9.32199 -8.66621 -8.56776 -8.53503 -6.12240 -4.12541 0.36365 0.86493 1.31726 2.29159 2.32964 2.85187 3.24204 3.26967 3.32026 3.33065 3.41647 3.80528 4.19206 4.36514 4.36843 4.42061 4.49485 4.59514 4.63840 4.83705 4.87471 4.92922 5.00776 5.15252 5.20607 5.20679 5.27409 5.33594 5.40286 5.44992 5.53427 5.60714 5.71458 5.75771 5.92385 5.96678 5.98280 6.05008 6.08470 6.18329 6.38491 6.53800 6.70528 7.10864 7.21135 7.46263 7.65000 7.83479 8.41066 8.49860 8.91992 9.47763 11.00754 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019529 B = 0.001779 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.421081 B =15733.596832 C =16152.469223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.011 3.989 3 N -0.476 5.476 4 C 0.207 3.793 5 C -0.008 4.008 6 C -0.139 4.139 7 C 0.510 3.490 8 O -0.547 6.547 9 N -0.725 5.725 10 C 0.129 3.871 11 C -0.023 4.023 12 C -0.524 4.524 13 H 0.076 0.924 14 C 0.069 3.931 15 N -0.898 5.898 16 Si 0.882 3.118 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.266 1.266 20 O -0.191 6.191 21 C -0.022 4.022 22 C -0.012 4.012 23 C -0.095 4.095 24 C -0.118 4.118 25 C -0.110 4.110 26 C -0.118 4.118 27 C -0.092 4.092 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.397 0.603 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.022 0.978 39 H 0.017 0.983 40 H 0.265 0.735 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.803 -24.042 -9.949 36.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.110 4.110 3 N -0.205 5.205 4 C 0.001 3.999 5 C -0.046 4.046 6 C -0.180 4.180 7 C 0.295 3.705 8 O -0.425 6.425 9 N -0.375 5.375 10 C 0.007 3.993 11 C -0.060 4.060 12 C -0.562 4.562 13 H 0.094 0.906 14 C -0.133 4.133 15 N -0.536 5.536 16 Si 0.709 3.291 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.191 1.191 20 O -0.078 6.078 21 C -0.075 4.075 22 C -0.013 4.013 23 C -0.113 4.113 24 C -0.136 4.136 25 C -0.128 4.128 26 C -0.136 4.136 27 C -0.110 4.110 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.230 0.770 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -25.440 -23.043 -10.583 35.919 hybrid contribution -0.122 -1.042 1.410 1.757 sum -25.562 -24.085 -9.174 36.299 Atomic orbital electron populations 1.20177 0.86293 1.03661 1.02823 1.21810 0.97847 0.87077 1.04247 1.70317 1.00430 1.31011 1.18742 1.26359 0.95496 0.78820 0.99231 1.19877 0.90083 0.96759 0.97909 1.21646 0.98022 1.00987 0.97369 1.20293 0.84576 0.81290 0.84318 1.90709 1.62992 1.57595 1.31201 1.46319 1.32907 1.50352 1.07884 1.21533 0.85304 0.92303 1.00176 1.19802 0.97735 0.97153 0.91353 1.20919 1.11614 1.28750 0.94908 0.90605 1.25002 0.94604 0.94530 0.99151 1.69902 1.22339 1.34293 1.27074 0.86752 0.80165 0.78594 0.83554 1.20232 1.21252 1.19093 1.84493 1.29602 1.23981 1.69739 1.21121 0.81167 0.94509 1.10664 1.17559 0.98100 0.87360 0.98256 1.21327 0.99036 0.93044 0.97912 1.21131 0.97622 0.95552 0.99311 1.21337 0.96159 0.99900 0.95381 1.21098 1.00284 0.92832 0.99369 1.21180 0.96342 0.96291 0.97203 0.90545 0.90262 0.90637 0.87850 0.86456 0.88100 0.88538 0.76952 0.91865 0.91816 0.95967 0.96433 0.92537 0.85552 0.85375 0.85572 0.85232 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 9.21 36.01 0.33 -0.21 16 2 C 0.01 0.13 7.12 -82.47 -0.59 -0.46 16 3 N -0.48 -6.06 11.27 -7.08 -0.08 -6.14 16 4 C 0.21 2.47 7.58 -12.90 -0.10 2.37 16 5 C -0.01 -0.09 5.13 -27.88 -0.14 -0.23 16 6 C -0.14 -1.51 5.68 -27.88 -0.16 -1.67 16 7 C 0.51 7.71 7.83 -10.98 -0.09 7.63 16 8 O -0.55 -10.29 15.98 5.55 0.09 -10.21 16 9 N -0.72 -11.42 5.56 -60.29 -0.33 -11.75 16 10 C 0.13 2.58 5.61 -4.04 -0.02 2.56 16 11 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 12 C -0.52 -14.60 9.66 -34.44 -0.33 -14.94 16 13 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 16 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 20 O -0.19 -2.32 10.79 4.23 0.05 -2.27 16 21 C -0.02 -0.24 6.79 -36.54 -0.25 -0.49 16 22 C -0.01 -0.11 5.60 -104.98 -0.59 -0.70 16 23 C -0.10 -0.76 9.79 -39.19 -0.38 -1.14 16 24 C -0.12 -0.72 10.03 -39.64 -0.40 -1.12 16 25 C -0.11 -0.59 10.04 -39.49 -0.40 -0.98 16 26 C -0.12 -0.65 10.03 -39.64 -0.40 -1.05 16 27 C -0.09 -0.64 8.95 -39.19 -0.35 -0.99 16 28 H 0.08 0.45 7.99 -51.92 -0.41 0.04 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.46 7.91 -51.93 -0.41 0.05 16 31 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 32 H 0.12 1.33 8.10 -51.93 -0.42 0.91 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.40 5.16 8.47 -40.82 -0.35 4.81 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 39 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 43 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 44 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 45 H 0.13 0.74 7.50 -52.49 -0.39 0.35 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -34.36 386.54 -8.99 -43.35 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.56 Total: 1.54 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -4.07 Total: -10.16 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.36 Total: -44.38 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.13 Total: -12.48 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.36 -8.99 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272976660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.783 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds