Wall clock time and date at job start Tue Mar 31 2020 15:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30171 * 126.80566 * 2 1 4 4 O 1.20922 * 111.60866 * 180.02562 * 3 2 1 5 5 C 1.34051 * 111.56436 * 359.76087 * 4 3 2 6 6 C 1.50700 * 126.77443 * 180.28897 * 5 4 3 7 7 C 1.35456 * 106.44491 * 0.38111 * 5 4 3 8 8 C 1.50689 * 128.00389 * 179.91314 * 7 5 4 9 9 C 1.53005 * 109.47341 * 303.94716 * 8 7 5 10 10 C 1.53005 * 109.47036 * 183.94864 * 8 7 5 11 11 C 1.50698 * 109.47365 * 63.94896 * 8 7 5 12 12 O 1.21284 * 120.00126 * 5.71206 * 11 8 7 13 13 N 1.34784 * 120.00183 * 185.70974 * 11 8 7 14 14 C 1.39235 * 119.99657 * 185.43863 * 13 11 8 15 15 C 1.39477 * 119.83874 * 34.33853 * 14 13 11 16 16 C 1.36376 * 120.17080 * 180.30043 * 15 14 13 17 17 C 1.40863 * 119.82474 * 359.46987 * 16 15 14 18 18 C 1.41155 * 120.16289 * 180.25288 * 17 16 15 19 19 H 1.08000 * 120.00313 * 211.21180 * 18 17 16 20 20 C 1.39907 * 120.00146 * 31.21324 * 18 17 16 21 21 N 1.30877 * 119.99842 * 8.17216 * 20 18 17 22 22 Si 1.86795 * 120.00286 * 188.17509 * 20 18 17 23 23 H 1.48491 * 109.47503 * 59.99381 * 22 20 18 24 24 H 1.48504 * 109.47012 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47054 * 299.99322 * 22 20 18 26 26 C 1.40870 * 119.67678 * 0.52253 * 17 16 15 27 27 C 1.36369 * 119.82369 * 359.73455 * 26 17 16 28 28 H 1.09003 * 109.47207 * 262.57329 * 1 2 3 29 29 H 1.09005 * 109.47072 * 22.57532 * 1 2 3 30 30 H 1.09005 * 109.47460 * 142.56979 * 1 2 3 31 31 H 1.09004 * 109.47001 * 274.83467 * 6 5 4 32 32 H 1.08992 * 109.47287 * 34.83458 * 6 5 4 33 33 H 1.09004 * 109.46614 * 154.84064 * 6 5 4 34 34 H 1.09000 * 109.46856 * 175.84539 * 9 8 7 35 35 H 1.08995 * 109.46991 * 295.84693 * 9 8 7 36 36 H 1.09000 * 109.46998 * 55.84496 * 9 8 7 37 37 H 1.09002 * 109.47216 * 305.78512 * 10 8 7 38 38 H 1.08995 * 109.47059 * 65.78799 * 10 8 7 39 39 H 1.09002 * 109.46972 * 185.78415 * 10 8 7 40 40 H 0.96996 * 119.99548 * 5.43727 * 13 11 8 41 41 H 1.08004 * 119.91672 * 0.02562 * 15 14 13 42 42 H 1.08001 * 120.08465 * 179.69783 * 16 15 14 43 43 H 0.96996 * 120.00313 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.08787 * 179.70500 * 26 17 16 45 45 H 1.08012 * 119.91365 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0422 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6024 -0.6070 0.0043 6 6 4.9021 -1.3697 0.0114 7 6 2.3539 -1.1322 -0.0006 8 6 1.9590 -2.5864 0.0000 9 6 2.6082 -3.2917 -1.1926 10 6 0.4370 -2.7017 -0.1061 11 6 2.4237 -3.2327 1.2796 12 8 2.9243 -2.5567 2.1534 13 7 2.2830 -4.5619 1.4531 14 6 2.6068 -5.1423 2.6766 15 6 2.3823 -4.4386 3.8597 16 6 2.7027 -4.9982 5.0614 17 6 3.2513 -6.2948 5.1063 18 6 3.5806 -6.8830 6.3465 19 1 4.4044 -7.5782 6.4128 20 6 2.8398 -6.5653 7.4901 21 7 1.7476 -5.8519 7.3849 22 14 3.4095 -7.1594 9.1669 23 1 4.7610 -6.6145 9.4523 24 1 2.4574 -6.6931 10.2069 25 1 3.4623 -8.6434 9.1746 26 6 3.4751 -6.9994 3.9072 27 6 3.1546 -6.4246 2.7129 28 1 -0.3634 -0.1328 1.0191 29 1 -0.3633 0.9490 -0.3945 30 1 -0.3634 -0.8161 -0.6246 31 1 5.2630 -1.4822 -1.0111 32 1 5.6403 -0.8243 0.5992 33 1 4.7431 -2.3544 0.4509 34 1 2.3831 -4.3574 -1.1509 35 1 2.2161 -2.8734 -2.1195 36 1 3.6879 -3.1467 -1.1567 37 1 -0.0280 -2.1135 0.6851 38 1 0.1111 -2.3273 -1.0765 39 1 0.1436 -3.7463 -0.0025 40 1 1.9561 -5.1139 0.7257 41 1 1.9577 -3.4462 3.8238 42 1 2.5327 -4.4501 5.9763 43 1 1.2342 -5.6313 8.1777 44 1 3.8999 -7.9920 3.9337 45 1 3.3259 -6.9634 1.7926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280414446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:02 Heat of formation + Delta-G solvation = 43.923219 kcal Electronic energy + Delta-G solvation = -28181.261131 eV Core-core repulsion = 24359.905492 eV Total energy + Delta-G solvation = -3821.355639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.87198 -40.18744 -37.68982 -36.21872 -34.53949 -33.95907 -33.11932 -32.19794 -29.57422 -29.41113 -28.90529 -27.84802 -26.84515 -25.22499 -23.85642 -22.45438 -21.33645 -20.68006 -20.17127 -18.99949 -17.68854 -17.34375 -17.18011 -16.40325 -16.12425 -15.33703 -14.90656 -14.75682 -14.36666 -14.08477 -13.97161 -13.61521 -13.48111 -13.15256 -13.10609 -12.78215 -12.72614 -12.59675 -12.40052 -12.38169 -12.01727 -11.95343 -11.78017 -11.53954 -11.43001 -11.31497 -11.13149 -11.10291 -10.72142 -10.64922 -9.92763 -9.83129 -9.62634 -9.40110 -9.17803 -9.05209 -8.83839 -7.56560 -6.95066 -6.69032 -4.34469 1.53818 2.21501 2.52085 2.98656 3.05929 3.08061 3.10478 3.14139 3.33457 3.69862 3.94696 4.12365 4.44782 4.52023 4.64805 4.69640 4.78499 5.03111 5.19996 5.24807 5.34398 5.36747 5.39083 5.41980 5.53361 5.56944 5.62544 5.68116 5.71064 5.79210 5.88251 5.93003 6.07385 6.09702 6.16960 6.33663 6.74541 6.95303 7.00904 7.14351 7.25570 7.56319 7.64242 7.91770 8.03993 8.16199 8.28678 8.33823 8.60742 8.72391 8.88136 8.97263 10.24130 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.002928 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.931721 B = 9561.635231 C = 9840.727694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.032 3.968 3 N -0.372 5.372 4 O 0.092 5.908 5 C -0.002 4.002 6 C -0.075 4.075 7 C -0.177 4.177 8 C 0.001 3.999 9 C -0.145 4.145 10 C -0.149 4.149 11 C 0.507 3.493 12 O -0.518 6.518 13 N -0.648 5.648 14 C 0.002 3.998 15 C -0.088 4.088 16 C -0.145 4.145 17 C 0.106 3.894 18 C -0.462 4.462 19 H 0.076 0.924 20 C 0.072 3.928 21 N -0.803 5.803 22 Si 0.912 3.088 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.209 4.209 27 C -0.108 4.108 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.393 0.607 41 H 0.099 0.901 42 H 0.121 0.879 43 H 0.280 0.720 44 H 0.096 0.904 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 5.206 -16.463 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 N -0.079 5.079 4 O 0.029 5.971 5 C -0.066 4.066 6 C -0.132 4.132 7 C -0.181 4.181 8 C -0.004 4.004 9 C -0.202 4.202 10 C -0.206 4.206 11 C 0.292 3.708 12 O -0.393 6.393 13 N -0.292 5.292 14 C -0.090 4.090 15 C -0.108 4.108 16 C -0.164 4.164 17 C 0.103 3.897 18 C -0.492 4.492 19 H 0.094 0.906 20 C -0.144 4.144 21 N -0.429 5.429 22 Si 0.737 3.263 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.229 4.229 27 C -0.128 4.128 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.227 0.773 41 H 0.118 0.882 42 H 0.139 0.861 43 H 0.091 0.909 44 H 0.114 0.886 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.549 7.134 -15.680 17.296 hybrid contribution -0.136 -1.326 0.554 1.444 sum -1.685 5.808 -15.126 16.290 Atomic orbital electron populations 1.20655 0.86404 1.03929 1.03711 1.23282 0.98653 0.88341 1.02453 1.73791 0.89283 1.23882 1.20983 1.84762 1.21617 1.22553 1.68189 1.24086 0.98175 0.83423 1.00885 1.20425 0.90242 0.99412 1.03156 1.20205 0.91791 0.95324 1.10821 1.18964 0.97541 0.89190 0.94659 1.22008 1.01537 1.00261 0.96425 1.22272 0.92246 1.03260 1.02844 1.20228 0.79622 0.82608 0.88326 1.90727 1.42513 1.62502 1.43598 1.42978 1.64765 1.07236 1.14191 1.17175 1.12487 0.95669 0.83687 1.20413 1.00291 0.98562 0.91584 1.21031 1.03956 0.95341 0.96115 1.17668 0.89218 0.90543 0.92239 1.19496 1.14069 1.23398 0.92221 0.90551 1.25891 0.93817 0.93600 1.01133 1.69791 1.11714 1.29791 1.31608 0.86304 0.79520 0.79868 0.80614 1.18917 1.20371 1.19085 1.20617 1.10492 0.99403 0.92400 1.20033 1.01212 0.94580 0.97019 0.90026 0.91025 0.88795 0.89791 0.89707 0.88749 0.91383 0.91283 0.91463 0.90842 0.90832 0.91358 0.77302 0.88247 0.86135 0.90907 0.88567 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 8.57 36.00 0.31 -0.61 16 2 C 0.03 0.44 7.25 -82.10 -0.60 -0.15 16 3 N -0.37 -5.76 12.07 33.42 0.40 -5.36 16 4 O 0.09 1.37 11.20 17.15 0.19 1.57 16 5 C 0.00 -0.03 6.93 -35.30 -0.24 -0.28 16 6 C -0.08 -0.83 8.73 36.01 0.31 -0.52 16 7 C -0.18 -2.43 4.27 -104.42 -0.45 -2.87 16 8 C 0.00 0.01 0.66 -156.81 -0.10 -0.10 16 9 C -0.14 -1.30 8.27 37.16 0.31 -1.00 16 10 C -0.15 -1.46 6.74 37.16 0.25 -1.21 16 11 C 0.51 8.31 5.20 -10.98 -0.06 8.25 16 12 O -0.52 -10.81 12.72 5.55 0.07 -10.74 16 13 N -0.65 -10.60 5.09 -9.74 -0.05 -10.65 16 14 C 0.00 0.04 6.27 -83.57 -0.52 -0.48 16 15 C -0.09 -2.15 8.57 -39.79 -0.34 -2.49 16 16 C -0.14 -3.82 8.58 -39.26 -0.34 -4.16 16 17 C 0.11 2.79 5.53 -106.80 -0.59 2.20 16 18 C -0.46 -12.16 9.04 -37.85 -0.34 -12.50 16 19 H 0.08 1.92 7.86 -52.49 -0.41 1.50 16 20 C 0.07 1.81 5.28 -17.33 -0.09 1.72 16 21 N -0.80 -20.93 10.87 55.55 0.60 -20.33 16 22 Si 0.91 18.80 29.57 -169.99 -5.03 13.77 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 26 C -0.21 -4.93 9.74 -39.26 -0.38 -5.31 16 27 C -0.11 -2.27 9.89 -39.79 -0.39 -2.67 16 28 H 0.08 0.84 7.75 -51.93 -0.40 0.44 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.75 4.80 -51.93 -0.25 0.50 16 31 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.21 5.78 -51.93 -0.30 0.91 16 34 H 0.07 0.52 7.04 -51.93 -0.37 0.15 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.61 5.82 -51.93 -0.30 0.31 16 37 H 0.07 0.79 5.91 -51.93 -0.31 0.48 16 38 H 0.07 0.55 6.63 -51.93 -0.34 0.20 16 39 H 0.07 0.61 7.99 -51.93 -0.41 0.19 16 40 H 0.39 4.97 7.63 -40.82 -0.31 4.66 16 41 H 0.10 2.45 6.47 -52.48 -0.34 2.11 16 42 H 0.12 3.35 6.31 -52.49 -0.33 3.02 16 43 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 44 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 45 H 0.09 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -31.57 359.29 -7.41 -38.98 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.75 Total: 9.53 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -3.27 Total: -22.19 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.96 Total: -36.34 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.26 Total: -9.17 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.57 -7.41 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280414446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.903 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds