Wall clock time and date at job start Tue Mar 31 2020 15:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30171 * 126.80566 * 2 1 4 4 O 1.20922 * 111.60866 * 180.02562 * 3 2 1 5 5 C 1.34051 * 111.56436 * 359.76087 * 4 3 2 6 6 C 1.50700 * 126.77443 * 180.28897 * 5 4 3 7 7 C 1.35456 * 106.44491 * 0.38111 * 5 4 3 8 8 C 1.50689 * 128.00389 * 179.91314 * 7 5 4 9 9 C 1.53005 * 109.47341 * 303.94716 * 8 7 5 10 10 C 1.53005 * 109.47036 * 183.94864 * 8 7 5 11 11 C 1.50698 * 109.47365 * 63.94896 * 8 7 5 12 12 O 1.21284 * 120.00126 * 5.71206 * 11 8 7 13 13 N 1.34784 * 120.00183 * 185.70974 * 11 8 7 14 14 C 1.39235 * 119.99657 * 185.43863 * 13 11 8 15 15 C 1.39477 * 119.83874 * 34.33853 * 14 13 11 16 16 C 1.36376 * 120.17080 * 180.30043 * 15 14 13 17 17 C 1.40863 * 119.82474 * 359.46987 * 16 15 14 18 18 C 1.41155 * 120.16289 * 180.25288 * 17 16 15 19 19 H 1.08000 * 120.00313 * 211.21180 * 18 17 16 20 20 C 1.39907 * 120.00146 * 31.21324 * 18 17 16 21 21 N 1.30877 * 119.99842 * 8.17216 * 20 18 17 22 22 Si 1.86795 * 120.00286 * 188.17509 * 20 18 17 23 23 H 1.48491 * 109.47503 * 59.99381 * 22 20 18 24 24 H 1.48504 * 109.47012 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47054 * 299.99322 * 22 20 18 26 26 C 1.40870 * 119.67678 * 0.52253 * 17 16 15 27 27 C 1.36369 * 119.82369 * 359.73455 * 26 17 16 28 28 H 1.09003 * 109.47207 * 262.57329 * 1 2 3 29 29 H 1.09005 * 109.47072 * 22.57532 * 1 2 3 30 30 H 1.09005 * 109.47460 * 142.56979 * 1 2 3 31 31 H 1.09004 * 109.47001 * 274.83467 * 6 5 4 32 32 H 1.08992 * 109.47287 * 34.83458 * 6 5 4 33 33 H 1.09004 * 109.46614 * 154.84064 * 6 5 4 34 34 H 1.09000 * 109.46856 * 175.84539 * 9 8 7 35 35 H 1.08995 * 109.46991 * 295.84693 * 9 8 7 36 36 H 1.09000 * 109.46998 * 55.84496 * 9 8 7 37 37 H 1.09002 * 109.47216 * 305.78512 * 10 8 7 38 38 H 1.08995 * 109.47059 * 65.78799 * 10 8 7 39 39 H 1.09002 * 109.46972 * 185.78415 * 10 8 7 40 40 H 0.96996 * 119.99548 * 5.43727 * 13 11 8 41 41 H 1.08004 * 119.91672 * 0.02562 * 15 14 13 42 42 H 1.08001 * 120.08465 * 179.69783 * 16 15 14 43 43 H 0.96996 * 120.00313 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.08787 * 179.70500 * 26 17 16 45 45 H 1.08012 * 119.91365 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0422 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6024 -0.6070 0.0043 6 6 4.9021 -1.3697 0.0114 7 6 2.3539 -1.1322 -0.0006 8 6 1.9590 -2.5864 0.0000 9 6 2.6082 -3.2917 -1.1926 10 6 0.4370 -2.7017 -0.1061 11 6 2.4237 -3.2327 1.2796 12 8 2.9243 -2.5567 2.1534 13 7 2.2830 -4.5619 1.4531 14 6 2.6068 -5.1423 2.6766 15 6 2.3823 -4.4386 3.8597 16 6 2.7027 -4.9982 5.0614 17 6 3.2513 -6.2948 5.1063 18 6 3.5806 -6.8830 6.3465 19 1 4.4044 -7.5782 6.4128 20 6 2.8398 -6.5653 7.4901 21 7 1.7476 -5.8519 7.3849 22 14 3.4095 -7.1594 9.1669 23 1 4.7610 -6.6145 9.4523 24 1 2.4574 -6.6931 10.2069 25 1 3.4623 -8.6434 9.1746 26 6 3.4751 -6.9994 3.9072 27 6 3.1546 -6.4246 2.7129 28 1 -0.3634 -0.1328 1.0191 29 1 -0.3633 0.9490 -0.3945 30 1 -0.3634 -0.8161 -0.6246 31 1 5.2630 -1.4822 -1.0111 32 1 5.6403 -0.8243 0.5992 33 1 4.7431 -2.3544 0.4509 34 1 2.3831 -4.3574 -1.1509 35 1 2.2161 -2.8734 -2.1195 36 1 3.6879 -3.1467 -1.1567 37 1 -0.0280 -2.1135 0.6851 38 1 0.1111 -2.3273 -1.0765 39 1 0.1436 -3.7463 -0.0025 40 1 1.9561 -5.1139 0.7257 41 1 1.9577 -3.4462 3.8238 42 1 2.5327 -4.4501 5.9763 43 1 1.2342 -5.6313 8.1777 44 1 3.8999 -7.9920 3.9337 45 1 3.3259 -6.9634 1.7926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280414446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:01 Heat of formation + Delta-G solvation = 25.525807 kcal Electronic energy + Delta-G solvation = -28182.058902 eV Core-core repulsion = 24359.905492 eV Total energy + Delta-G solvation = -3822.153411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.93105 -41.54472 -39.34166 -37.43606 -36.18641 -35.03105 -34.68186 -33.31419 -31.43072 -30.72117 -30.28135 -28.76418 -27.61738 -26.96215 -24.92116 -23.84208 -23.13315 -22.17012 -21.29508 -20.33327 -19.22654 -18.81837 -18.50427 -17.58041 -17.44893 -17.05038 -16.20852 -15.90244 -15.73141 -15.44671 -15.07489 -14.89034 -14.52819 -14.41466 -14.32110 -13.98842 -13.94312 -13.70015 -13.58623 -13.52509 -13.29549 -13.26582 -13.18280 -12.85032 -12.78844 -12.70456 -12.45342 -12.40760 -12.12208 -11.68165 -11.58365 -11.45371 -11.17107 -10.92375 -10.74592 -10.45884 -10.06622 -9.44529 -8.76471 -8.54117 -6.29733 0.48323 0.81558 1.14488 1.17661 1.38219 1.45675 1.50178 1.82952 2.13657 2.22398 2.40815 2.80001 3.16434 3.50150 3.60686 3.68933 3.75959 3.92664 4.03531 4.32846 4.37445 4.44207 4.46454 4.55940 4.58175 4.60496 4.68908 4.72974 4.76878 4.86696 4.92534 4.96583 4.98448 5.07394 5.11840 5.11936 5.18927 5.31879 5.32698 5.33252 5.44632 5.69161 5.87661 6.08419 6.12755 6.36029 6.69381 6.74976 6.95319 7.01924 7.27909 7.42871 8.39899 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.002928 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.931721 B = 9561.635231 C = 9840.727694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.027 3.973 3 N -0.401 5.401 4 O 0.075 5.925 5 C -0.010 4.010 6 C -0.073 4.073 7 C -0.192 4.192 8 C 0.012 3.988 9 C -0.145 4.145 10 C -0.153 4.153 11 C 0.508 3.492 12 O -0.567 6.567 13 N -0.638 5.638 14 C 0.023 3.977 15 C -0.103 4.103 16 C -0.170 4.170 17 C 0.072 3.928 18 C -0.499 4.499 19 H 0.079 0.921 20 C 0.028 3.972 21 N -0.840 5.840 22 Si 0.984 3.016 23 H -0.263 1.263 24 H -0.272 1.272 25 H -0.256 1.256 26 C -0.214 4.214 27 C -0.101 4.101 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.417 0.583 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.284 0.716 44 H 0.111 0.889 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 3.728 -19.242 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 N -0.112 5.112 4 O 0.015 5.985 5 C -0.073 4.073 6 C -0.130 4.130 7 C -0.196 4.196 8 C 0.008 3.992 9 C -0.202 4.202 10 C -0.210 4.210 11 C 0.296 3.704 12 O -0.445 6.445 13 N -0.284 5.284 14 C -0.071 4.071 15 C -0.123 4.123 16 C -0.190 4.190 17 C 0.070 3.930 18 C -0.529 4.529 19 H 0.097 0.903 20 C -0.185 4.185 21 N -0.467 5.467 22 Si 0.805 3.195 23 H -0.187 1.187 24 H -0.196 1.196 25 H -0.180 1.180 26 C -0.234 4.234 27 C -0.121 4.121 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.255 0.745 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.129 0.871 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.834 5.640 -18.517 19.444 hybrid contribution -0.052 -0.775 1.248 1.470 sum -1.886 4.865 -17.270 18.041 Atomic orbital electron populations 1.20824 0.84158 1.05584 1.04139 1.23895 1.00198 0.88047 1.01045 1.73776 0.89683 1.25009 1.22698 1.84722 1.21690 1.23296 1.68795 1.24634 0.99440 0.83181 1.00085 1.20515 0.89241 0.98017 1.05242 1.20531 0.91748 0.96232 1.11126 1.18991 0.99252 0.87900 0.93066 1.22088 1.01330 1.01214 0.95598 1.22376 0.90149 1.04262 1.04184 1.21114 0.77989 0.82054 0.89283 1.90723 1.44454 1.63507 1.45798 1.42862 1.64691 1.07730 1.13101 1.17215 1.09861 0.95424 0.84564 1.20405 1.01047 0.98371 0.92484 1.20882 1.06171 0.95995 0.95940 1.17980 0.90496 0.90804 0.93748 1.19776 1.15057 1.24709 0.93362 0.90296 1.26767 0.93495 0.93439 1.04771 1.69888 1.12916 1.31188 1.32723 0.85217 0.78914 0.79686 0.75665 1.18704 1.19646 1.17989 1.20901 1.10083 1.00004 0.92454 1.20418 0.99376 0.94314 0.98027 0.90391 0.90181 0.86064 0.86264 0.89582 0.90288 0.89359 0.88996 0.91628 0.92179 0.87662 0.89945 0.74488 0.89552 0.88979 0.90592 0.87064 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 8.57 71.23 0.61 -1.08 16 2 C 0.03 0.73 7.25 43.58 0.32 1.04 16 3 N -0.40 -12.43 12.07 -49.55 -0.60 -13.03 16 4 O 0.07 2.26 11.20 71.53 0.80 3.06 16 5 C -0.01 -0.27 6.93 25.04 0.17 -0.10 16 6 C -0.07 -1.54 8.73 71.24 0.62 -0.92 16 7 C -0.19 -4.99 4.27 -19.74 -0.08 -5.07 16 8 C 0.01 0.25 0.66 -53.67 -0.04 0.22 16 9 C -0.15 -1.98 8.27 71.98 0.60 -1.39 16 10 C -0.15 -2.45 6.74 71.98 0.49 -1.96 16 11 C 0.51 15.85 5.20 87.66 0.46 16.31 16 12 O -0.57 -23.86 12.72 -3.04 -0.04 -23.90 16 13 N -0.64 -19.18 5.09 -303.10 -1.54 -20.73 16 14 C 0.02 0.94 6.27 38.57 0.24 1.18 16 15 C -0.10 -5.15 8.57 22.13 0.19 -4.96 16 16 C -0.17 -9.45 8.58 22.48 0.19 -9.26 16 17 C 0.07 3.92 5.53 -21.28 -0.12 3.80 16 18 C -0.50 -27.16 9.04 23.39 0.21 -26.95 16 19 H 0.08 4.07 7.86 -2.91 -0.02 4.05 16 20 C 0.03 1.45 5.28 85.24 0.45 1.90 16 21 N -0.84 -45.84 10.87 21.82 0.24 -45.60 16 22 Si 0.98 39.36 29.57 68.60 2.03 41.39 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 24 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 25 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 26 C -0.21 -9.97 9.74 22.48 0.22 -9.75 16 27 C -0.10 -4.00 9.89 22.13 0.22 -3.78 16 28 H 0.08 1.54 7.75 -2.39 -0.02 1.52 16 29 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.12 1.53 4.80 -2.38 -0.01 1.52 16 31 H 0.12 1.61 8.10 -2.38 -0.02 1.59 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.94 5.78 -2.38 -0.01 1.92 16 34 H 0.09 0.86 7.04 -2.39 -0.02 0.84 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.94 5.82 -2.39 -0.01 0.93 16 37 H 0.06 1.15 5.91 -2.39 -0.01 1.13 16 38 H 0.10 1.04 6.63 -2.39 -0.02 1.03 16 39 H 0.08 1.11 7.99 -2.39 -0.02 1.09 16 40 H 0.42 8.69 7.63 -92.71 -0.71 7.98 16 41 H 0.09 4.48 6.47 -2.91 -0.02 4.46 16 42 H 0.09 5.53 6.31 -2.91 -0.02 5.52 16 43 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 44 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 45 H 0.14 4.14 8.06 -2.90 -0.02 4.11 16 Total: -1.00 -74.09 359.29 5.97 -68.13 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.34 Total: 31.46 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 4.74 Total: -40.77 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -1.91 Total: -79.36 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.76 Total: -20.84 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -74.09 5.97 -68.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280414446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.652 kcal (2) G-P(sol) polarization free energy of solvation -74.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds