Wall clock time and date at job start Tue Mar 31 2020 15:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34737 * 125.66525 * 2 1 4 4 C 1.40935 * 107.02963 * 179.71735 * 3 2 1 5 5 C 1.35949 * 106.73861 * 0.25906 * 4 3 2 6 6 C 1.47799 * 125.92640 * 180.02562 * 5 4 3 7 7 C 1.39645 * 120.11145 * 359.97438 * 6 5 4 8 8 C 1.37975 * 119.98781 * 179.97438 * 7 6 5 9 9 C 1.38262 * 120.22315 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.88536 * 180.02562 * 9 8 7 11 11 C 1.38955 * 120.22445 * 359.97438 * 9 8 7 12 12 N 1.39970 * 119.99533 * 180.02562 * 11 9 8 13 13 C 1.34770 * 119.99815 * 204.58403 * 12 11 9 14 14 O 1.21588 * 120.00503 * 5.61968 * 13 12 11 15 15 N 1.34773 * 119.99832 * 185.61747 * 13 12 11 16 16 C 1.46505 * 119.99985 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47295 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47132 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99947 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99615 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99715 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00271 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47306 * 89.99323 * 22 20 18 24 24 H 1.48506 * 109.46975 * 209.99510 * 22 20 18 25 25 H 1.48500 * 109.46735 * 329.99004 * 22 20 18 26 26 C 1.38611 * 120.00682 * 359.78874 * 11 9 8 27 27 O 1.34306 * 125.66169 * 180.16185 * 2 1 3 28 28 H 1.08996 * 109.46693 * 89.99960 * 1 2 3 29 29 H 1.08994 * 109.46931 * 210.00561 * 1 2 3 30 30 H 1.09005 * 109.46626 * 330.00700 * 1 2 3 31 31 H 1.07996 * 126.48346 * 359.97438 * 3 2 1 32 32 H 1.07997 * 126.62940 * 180.28304 * 4 3 2 33 33 H 1.08001 * 120.00947 * 359.95893 * 7 6 5 34 34 H 1.08001 * 119.88722 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47499 * 89.99933 * 10 9 8 36 36 H 1.09003 * 109.46759 * 209.99989 * 10 9 8 37 37 H 1.09000 * 109.47103 * 329.99416 * 10 9 8 38 38 H 0.97002 * 119.99793 * 24.57961 * 12 11 9 39 39 H 0.97003 * 120.00655 * 0.02562 * 15 13 12 40 40 H 1.08997 * 109.47381 * 300.00262 * 16 15 13 41 41 H 1.09002 * 109.46849 * 60.00472 * 16 15 13 42 42 H 1.08997 * 109.47146 * 300.00438 * 17 16 15 43 43 H 1.09002 * 109.46587 * 59.99924 * 17 16 15 44 44 H 0.96997 * 119.99949 * 180.02562 * 21 20 18 45 45 H 1.07996 * 120.11102 * 180.23327 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0947 0.0000 4 6 3.6281 0.6443 0.0066 5 6 3.5831 -0.7144 0.0045 6 6 4.7506 -1.6208 0.0101 7 6 6.0447 -1.0962 0.0179 8 6 7.1327 -1.9446 0.0237 9 6 6.9469 -3.3147 0.0223 10 6 8.1408 -4.2344 0.0292 11 6 5.6632 -3.8465 0.0156 12 7 5.4806 -5.2342 0.0148 13 6 4.3430 -5.7639 -0.4767 14 8 3.5199 -5.0466 -1.0119 15 7 4.1177 -7.0888 -0.3751 16 6 2.8807 -7.6645 -0.9089 17 6 2.8750 -9.1751 -0.6662 18 6 1.6024 -9.7672 -1.2147 19 1 0.8710 -9.1299 -1.6893 20 6 1.3723 -11.1227 -1.1116 21 7 0.2615 -11.6394 -1.5898 22 14 2.6377 -12.2252 -0.2913 23 1 2.3466 -12.3168 1.1621 24 1 2.5783 -13.5809 -0.8945 25 1 3.9942 -11.6542 -0.4894 26 6 4.5634 -3.0028 0.0147 27 8 2.2900 -1.0912 -0.0031 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.9616 2.1226 -0.0004 32 1 4.5156 1.2597 0.0127 33 1 6.1940 -0.0265 0.0192 34 1 8.1329 -1.5371 0.0302 35 1 8.4225 -4.4564 1.0585 36 1 7.8885 -5.1610 -0.4863 37 1 8.9747 -3.7510 -0.4796 38 1 6.1729 -5.8147 0.3679 39 1 4.7740 -7.6611 0.0522 40 1 2.0242 -7.2126 -0.4088 41 1 2.8213 -7.4687 -1.9795 42 1 3.7316 -9.6267 -1.1666 43 1 2.9347 -9.3713 0.4044 44 1 0.0995 -12.5930 -1.5169 45 1 3.5649 -3.4143 0.0134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280749899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:04 Heat of formation + Delta-G solvation = 2.366447 kcal Electronic energy + Delta-G solvation = -26561.229595 eV Core-core repulsion = 22738.071919 eV Total energy + Delta-G solvation = -3823.157676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.63209 -40.70618 -38.82448 -35.43783 -34.87200 -33.35141 -33.32307 -32.84101 -31.49479 -30.58697 -29.29847 -28.08906 -25.39975 -24.88568 -23.20403 -22.16526 -21.43800 -20.85618 -20.54087 -20.22351 -18.46595 -17.81921 -16.92640 -16.30482 -16.28238 -15.72049 -15.51713 -15.05899 -14.78124 -14.42401 -14.17048 -14.13156 -13.93892 -13.63588 -13.36232 -13.33590 -13.21946 -12.98976 -12.90666 -12.63703 -12.55270 -12.33717 -11.96952 -11.60862 -11.56938 -11.51629 -11.28784 -10.69823 -10.41259 -10.28112 -10.04139 -9.99345 -9.76740 -9.37027 -9.34042 -8.73444 -8.62305 -8.15591 -7.76551 -6.13348 -4.13758 0.63917 1.29911 1.91068 2.53498 2.70188 2.74596 3.22987 3.26364 3.30411 3.31628 3.79892 4.24875 4.35165 4.44004 4.60306 4.71984 4.79831 4.88059 4.95018 5.09071 5.19401 5.21707 5.27641 5.29231 5.33411 5.46397 5.51893 5.60736 5.68819 5.76830 5.82812 5.98128 6.00076 6.14645 6.17660 6.27658 6.33634 6.36951 6.46944 6.52293 6.67947 6.92704 6.93639 7.10251 7.16936 7.19737 7.63510 8.06687 8.41700 8.66775 8.91134 9.46390 10.99690 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.002668 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.003676 B =10490.610468 C =12684.863102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.007 4.007 3 C -0.215 4.215 4 C -0.194 4.194 5 C 0.034 3.966 6 C -0.004 4.004 7 C -0.121 4.121 8 C -0.095 4.095 9 C -0.120 4.120 10 C -0.114 4.114 11 C 0.182 3.818 12 N -0.687 5.687 13 C 0.696 3.304 14 O -0.570 6.570 15 N -0.734 5.734 16 C 0.146 3.854 17 C -0.021 4.021 18 C -0.523 4.523 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.898 5.898 22 Si 0.883 3.117 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.267 1.267 26 C -0.111 4.111 27 O -0.162 6.162 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.406 0.594 39 H 0.394 0.606 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.022 0.978 43 H 0.018 0.982 44 H 0.265 0.735 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.076 23.656 6.409 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 C -0.234 4.234 4 C -0.213 4.213 5 C -0.016 4.016 6 C -0.005 4.005 7 C -0.140 4.140 8 C -0.113 4.113 9 C -0.123 4.123 10 C -0.171 4.171 11 C 0.085 3.915 12 N -0.334 5.334 13 C 0.396 3.604 14 O -0.447 6.447 15 N -0.387 5.387 16 C 0.024 3.976 17 C -0.059 4.059 18 C -0.562 4.562 19 H 0.095 0.905 20 C -0.133 4.133 21 N -0.536 5.536 22 Si 0.710 3.290 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.191 1.191 26 C -0.132 4.132 27 O -0.058 6.058 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.242 0.758 39 H 0.227 0.773 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.040 0.960 43 H 0.036 0.964 44 H 0.075 0.925 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 13.018 23.697 5.873 27.668 hybrid contribution 1.259 -1.105 0.717 1.822 sum 14.277 22.593 6.590 27.526 Atomic orbital electron populations 1.20344 0.85021 1.04134 1.03752 1.22597 0.94168 0.84046 1.04967 1.21459 0.92577 0.99287 1.10102 1.21694 0.98194 0.93154 1.08234 1.20398 0.81792 0.92650 1.06804 1.17596 0.89274 0.91165 1.02434 1.20887 0.90503 0.99873 1.02785 1.20619 0.98595 0.91649 1.00478 1.19670 0.92922 0.94802 1.04934 1.20733 0.95446 0.98595 1.02315 1.17220 0.92865 0.82124 0.99288 1.42762 1.20203 1.05396 1.65017 1.16058 0.81752 0.83127 0.79458 1.90908 1.45999 1.59405 1.48397 1.45584 1.24492 1.05518 1.63152 1.21472 0.82778 0.94960 0.98387 1.19800 0.98792 0.90320 0.97000 1.20898 1.02837 0.93522 1.38896 0.90546 1.24999 0.95305 0.97997 0.94967 1.69902 1.24905 1.12820 1.45953 0.86747 0.82385 0.80049 0.79839 1.20222 1.21253 1.19126 1.21611 1.00514 0.91413 0.99639 1.84091 1.15976 1.34743 1.71005 0.89890 0.90263 0.89348 0.83377 0.83290 0.85597 0.85210 0.91053 0.91685 0.90974 0.75815 0.77323 0.91832 0.91830 0.95973 0.96399 0.92513 0.82586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.41 36.01 0.37 -0.25 16 2 C -0.01 -0.08 7.32 -35.55 -0.26 -0.34 16 3 C -0.22 -2.32 10.78 -39.80 -0.43 -2.75 16 4 C -0.19 -2.22 10.26 -39.38 -0.40 -2.62 16 5 C 0.03 0.47 7.03 -36.49 -0.26 0.21 16 6 C 0.00 -0.05 5.87 -105.00 -0.62 -0.67 16 7 C -0.12 -1.28 9.56 -39.15 -0.37 -1.65 16 8 C -0.09 -0.89 9.67 -39.67 -0.38 -1.27 16 9 C -0.12 -1.25 5.90 -104.35 -0.62 -1.86 16 10 C -0.11 -0.83 9.44 36.01 0.34 -0.49 16 11 C 0.18 2.42 6.41 -83.74 -0.54 1.88 16 12 N -0.69 -8.76 4.98 -14.26 -0.07 -8.83 16 13 C 0.70 11.64 8.37 -86.93 -0.73 10.91 16 14 O -0.57 -11.81 13.50 5.29 0.07 -11.74 16 15 N -0.73 -11.86 5.56 -65.22 -0.36 -12.22 16 16 C 0.15 2.95 5.61 -4.04 -0.02 2.93 16 17 C -0.02 -0.48 4.16 -27.88 -0.12 -0.59 16 18 C -0.52 -14.53 9.66 -34.44 -0.33 -14.87 16 19 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 22 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 26 C -0.11 -1.72 8.38 -38.99 -0.33 -2.04 16 27 O -0.16 -2.47 10.41 4.65 0.05 -2.42 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.15 1.29 7.26 -52.49 -0.38 0.91 16 33 H 0.13 1.01 6.98 -52.49 -0.37 0.64 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.47 6.97 -51.93 -0.36 0.11 16 37 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 38 H 0.41 3.72 7.39 -40.82 -0.30 3.42 16 39 H 0.39 5.10 8.49 -40.82 -0.35 4.76 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 43 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 45 H 0.16 2.87 5.63 -52.49 -0.30 2.57 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -34.66 377.78 -9.51 -44.17 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.21 Total: 7.21 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -4.78 Total: -11.60 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.34 Total: -47.47 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.12 Total: -14.16 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.66 -9.51 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280749899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.539 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds