Wall clock time and date at job start Tue Mar 31 2020 15:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34737 * 125.66525 * 2 1 4 4 C 1.40935 * 107.02963 * 179.71735 * 3 2 1 5 5 C 1.35949 * 106.73861 * 0.25906 * 4 3 2 6 6 C 1.47799 * 125.92640 * 180.02562 * 5 4 3 7 7 C 1.39645 * 120.11145 * 359.97438 * 6 5 4 8 8 C 1.37975 * 119.98781 * 179.97438 * 7 6 5 9 9 C 1.38262 * 120.22315 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.88536 * 180.02562 * 9 8 7 11 11 C 1.38955 * 120.22445 * 359.97438 * 9 8 7 12 12 N 1.39970 * 119.99533 * 180.02562 * 11 9 8 13 13 C 1.34770 * 119.99815 * 204.58403 * 12 11 9 14 14 O 1.21588 * 120.00503 * 5.61968 * 13 12 11 15 15 N 1.34773 * 119.99832 * 185.61747 * 13 12 11 16 16 C 1.46505 * 119.99985 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47295 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47132 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99947 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99615 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99715 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00271 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47306 * 89.99323 * 22 20 18 24 24 H 1.48506 * 109.46975 * 209.99510 * 22 20 18 25 25 H 1.48500 * 109.46735 * 329.99004 * 22 20 18 26 26 C 1.38611 * 120.00682 * 359.78874 * 11 9 8 27 27 O 1.34306 * 125.66169 * 180.16185 * 2 1 3 28 28 H 1.08996 * 109.46693 * 89.99960 * 1 2 3 29 29 H 1.08994 * 109.46931 * 210.00561 * 1 2 3 30 30 H 1.09005 * 109.46626 * 330.00700 * 1 2 3 31 31 H 1.07996 * 126.48346 * 359.97438 * 3 2 1 32 32 H 1.07997 * 126.62940 * 180.28304 * 4 3 2 33 33 H 1.08001 * 120.00947 * 359.95893 * 7 6 5 34 34 H 1.08001 * 119.88722 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47499 * 89.99933 * 10 9 8 36 36 H 1.09003 * 109.46759 * 209.99989 * 10 9 8 37 37 H 1.09000 * 109.47103 * 329.99416 * 10 9 8 38 38 H 0.97002 * 119.99793 * 24.57961 * 12 11 9 39 39 H 0.97003 * 120.00655 * 0.02562 * 15 13 12 40 40 H 1.08997 * 109.47381 * 300.00262 * 16 15 13 41 41 H 1.09002 * 109.46849 * 60.00472 * 16 15 13 42 42 H 1.08997 * 109.47146 * 300.00438 * 17 16 15 43 43 H 1.09002 * 109.46587 * 59.99924 * 17 16 15 44 44 H 0.96997 * 119.99949 * 180.02562 * 21 20 18 45 45 H 1.07996 * 120.11102 * 180.23327 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0947 0.0000 4 6 3.6281 0.6443 0.0066 5 6 3.5831 -0.7144 0.0045 6 6 4.7506 -1.6208 0.0101 7 6 6.0447 -1.0962 0.0179 8 6 7.1327 -1.9446 0.0237 9 6 6.9469 -3.3147 0.0223 10 6 8.1408 -4.2344 0.0292 11 6 5.6632 -3.8465 0.0156 12 7 5.4806 -5.2342 0.0148 13 6 4.3430 -5.7639 -0.4767 14 8 3.5199 -5.0466 -1.0119 15 7 4.1177 -7.0888 -0.3751 16 6 2.8807 -7.6645 -0.9089 17 6 2.8750 -9.1751 -0.6662 18 6 1.6024 -9.7672 -1.2147 19 1 0.8710 -9.1299 -1.6893 20 6 1.3723 -11.1227 -1.1116 21 7 0.2615 -11.6394 -1.5898 22 14 2.6377 -12.2252 -0.2913 23 1 2.3466 -12.3168 1.1621 24 1 2.5783 -13.5809 -0.8945 25 1 3.9942 -11.6542 -0.4894 26 6 4.5634 -3.0028 0.0147 27 8 2.2900 -1.0912 -0.0031 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.9616 2.1226 -0.0004 32 1 4.5156 1.2597 0.0127 33 1 6.1940 -0.0265 0.0192 34 1 8.1329 -1.5371 0.0302 35 1 8.4225 -4.4564 1.0585 36 1 7.8885 -5.1610 -0.4863 37 1 8.9747 -3.7510 -0.4796 38 1 6.1729 -5.8147 0.3679 39 1 4.7740 -7.6611 0.0522 40 1 2.0242 -7.2126 -0.4088 41 1 2.8213 -7.4687 -1.9795 42 1 3.7316 -9.6267 -1.1666 43 1 2.9347 -9.3713 0.4044 44 1 0.0995 -12.5930 -1.5169 45 1 3.5649 -3.4143 0.0134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280749899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:03 Heat of formation + Delta-G solvation = -20.398277 kcal Electronic energy + Delta-G solvation = -26562.216748 eV Core-core repulsion = 22738.071919 eV Total energy + Delta-G solvation = -3824.144829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.56050 -41.86681 -39.90511 -36.88625 -36.13581 -34.86075 -34.24269 -34.19513 -32.33762 -32.16880 -30.46570 -28.85369 -26.92022 -25.96013 -24.29688 -23.06339 -22.73467 -22.40134 -21.64564 -21.19176 -19.67124 -18.94777 -18.89433 -17.39733 -17.26408 -16.95629 -16.43586 -16.35884 -16.08693 -15.95164 -15.45355 -15.32012 -15.14320 -14.70825 -14.59027 -14.48610 -14.03198 -13.89565 -13.80988 -13.68785 -13.37910 -13.22279 -13.17432 -13.03290 -12.73921 -12.49735 -12.34186 -12.20863 -12.18825 -11.79222 -11.74348 -11.53479 -11.15315 -10.92641 -10.80251 -10.22398 -10.15515 -9.19423 -8.64052 -8.31255 -6.39067 -0.25326 0.36014 1.01768 1.38334 1.41315 1.48642 1.52548 1.66730 1.91272 1.99672 2.35957 2.86382 3.03769 3.10887 3.54917 3.83731 3.92850 4.02834 4.08514 4.20320 4.26090 4.34913 4.39186 4.45411 4.53867 4.64157 4.67950 4.71330 4.74767 4.81969 4.86880 4.90767 4.97600 5.08006 5.11527 5.26567 5.28017 5.34510 5.37884 5.40204 5.48201 5.49887 5.61289 5.64831 5.91179 6.00507 6.20242 6.20958 6.68023 6.92844 7.25285 7.38621 8.85710 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.002668 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.003676 B =10490.610468 C =12684.863102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.031 4.031 3 C -0.214 4.214 4 C -0.183 4.183 5 C -0.006 4.006 6 C -0.024 4.024 7 C -0.114 4.114 8 C -0.087 4.087 9 C -0.110 4.110 10 C -0.114 4.114 11 C 0.156 3.844 12 N -0.666 5.666 13 C 0.694 3.306 14 O -0.616 6.616 15 N -0.722 5.722 16 C 0.164 3.836 17 C -0.010 4.010 18 C -0.541 4.541 19 H 0.027 0.973 20 C 0.003 3.997 21 N -0.951 5.951 22 Si 0.961 3.039 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.234 1.234 26 C -0.146 4.146 27 O -0.203 6.203 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.181 0.819 32 H 0.181 0.819 33 H 0.156 0.844 34 H 0.173 0.827 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.425 0.575 39 H 0.414 0.586 40 H 0.041 0.959 41 H 0.043 0.957 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.268 0.732 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.727 25.054 7.911 32.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 C -0.233 4.233 4 C -0.202 4.202 5 C -0.055 4.055 6 C -0.024 4.024 7 C -0.132 4.132 8 C -0.105 4.105 9 C -0.113 4.113 10 C -0.171 4.171 11 C 0.061 3.939 12 N -0.315 5.315 13 C 0.394 3.606 14 O -0.496 6.496 15 N -0.377 5.377 16 C 0.039 3.961 17 C -0.048 4.048 18 C -0.579 4.579 19 H 0.046 0.954 20 C -0.194 4.194 21 N -0.591 5.591 22 Si 0.783 3.217 23 H -0.190 1.190 24 H -0.213 1.213 25 H -0.157 1.157 26 C -0.167 4.167 27 O -0.101 6.101 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.137 0.863 31 H 0.198 0.802 32 H 0.198 0.802 33 H 0.174 0.826 34 H 0.190 0.810 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.265 0.735 39 H 0.250 0.750 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.742 25.120 7.407 31.633 hybrid contribution -0.259 -1.371 0.210 1.411 sum 17.483 23.750 7.617 30.458 Atomic orbital electron populations 1.20514 0.83042 1.05142 1.04512 1.23419 0.95660 0.83952 1.05036 1.21895 0.92118 1.00330 1.08931 1.22124 0.99643 0.92227 1.06217 1.20876 0.81603 0.94058 1.09008 1.17875 0.90818 0.90460 1.03294 1.21283 0.89251 1.01681 1.01033 1.21159 1.00100 0.90987 0.98235 1.20084 0.92467 0.96052 1.02729 1.20848 0.94381 0.97934 1.03888 1.17435 0.93737 0.81724 1.01031 1.42416 1.19172 1.05754 1.64141 1.16187 0.82348 0.82781 0.79239 1.90906 1.47898 1.60468 1.50372 1.45125 1.23622 1.05717 1.63215 1.20946 0.83979 0.94029 0.97122 1.19640 0.96477 0.90952 0.97743 1.21235 1.04197 0.93643 1.38838 0.95441 1.26105 0.97836 0.99819 0.95605 1.70079 1.27653 1.13468 1.47901 0.85512 0.80334 0.77164 0.78687 1.19022 1.21260 1.15724 1.21375 0.99350 0.93063 1.02886 1.84072 1.17219 1.36779 1.71995 0.89174 0.91200 0.86330 0.80176 0.80203 0.82631 0.80953 0.89033 0.91785 0.88857 0.73532 0.74961 0.94047 0.93850 0.94152 0.94464 0.92287 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.41 71.24 0.74 -0.56 16 2 C -0.03 -0.77 7.32 24.88 0.18 -0.59 16 3 C -0.21 -4.41 10.78 22.13 0.24 -4.17 16 4 C -0.18 -4.03 10.26 22.40 0.23 -3.80 16 5 C -0.01 -0.19 7.03 24.27 0.17 -0.02 16 6 C -0.02 -0.66 5.87 -20.11 -0.12 -0.78 16 7 C -0.11 -2.15 9.56 22.55 0.22 -1.93 16 8 C -0.09 -1.30 9.67 22.21 0.21 -1.09 16 9 C -0.11 -2.00 5.90 -19.69 -0.12 -2.12 16 10 C -0.11 -1.18 9.44 71.24 0.67 -0.51 16 11 C 0.16 4.18 6.41 38.10 0.24 4.42 16 12 N -0.67 -16.83 4.98 -317.29 -1.58 -18.41 16 13 C 0.69 24.07 8.37 179.06 1.50 25.56 16 14 O -0.62 -27.68 13.50 -3.99 -0.05 -27.74 16 15 N -0.72 -23.30 5.56 -478.53 -2.66 -25.96 16 16 C 0.16 6.85 5.61 86.38 0.48 7.34 16 17 C -0.01 -0.46 4.16 29.85 0.12 -0.33 16 18 C -0.54 -31.12 9.66 25.60 0.25 -30.88 16 19 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 20 C 0.00 0.20 5.47 84.65 0.46 0.66 16 21 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 22 Si 0.96 42.15 27.47 68.60 1.88 44.03 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.23 -9.02 6.54 99.48 0.65 -8.36 16 26 C -0.15 -4.85 8.38 22.66 0.19 -4.66 16 27 O -0.20 -6.79 10.41 -6.27 -0.07 -6.85 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.18 2.58 7.26 -2.91 -0.02 2.56 16 33 H 0.16 1.91 6.98 -2.91 -0.02 1.89 16 34 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 35 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 0.70 6.97 -2.39 -0.02 0.69 16 37 H 0.09 0.63 8.08 -2.39 -0.02 0.61 16 38 H 0.43 7.00 7.39 -92.71 -0.69 6.31 16 39 H 0.41 9.91 8.49 -92.71 -0.79 9.12 16 40 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.04 1.67 7.20 -2.39 -0.02 1.65 16 43 H 0.04 1.53 7.57 -2.39 -0.02 1.51 16 44 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 45 H 0.11 4.67 5.63 -2.91 -0.02 4.65 16 Total: -1.00 -83.99 377.78 3.01 -80.98 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: -0.49 Total: 26.77 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 5.68 Total: -13.44 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -3.94 Total: -103.75 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.12 Total: -34.59 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.88 Total: 44.03 kcal Total: -83.99 3.01 -80.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280749899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.582 kcal (2) G-P(sol) polarization free energy of solvation -83.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds