Wall clock time and date at job start Tue Mar 31 2020 15:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34731 * 125.66407 * 2 1 4 4 C 1.40933 * 107.02757 * 179.71743 * 3 2 1 5 5 C 1.35939 * 106.74269 * 0.26222 * 4 3 2 6 6 C 1.47802 * 125.93026 * 180.02562 * 5 4 3 7 7 C 1.39644 * 120.11434 * 0.02562 * 6 5 4 8 8 C 1.37969 * 119.99270 * 179.97438 * 7 6 5 9 9 C 1.38253 * 120.22463 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.89190 * 180.02562 * 9 8 7 11 11 C 1.38965 * 120.22597 * 0.02562 * 9 8 7 12 12 N 1.39965 * 120.00051 * 180.02562 * 11 9 8 13 13 C 1.34770 * 119.99969 * 204.58020 * 12 11 9 14 14 O 1.21588 * 120.00503 * 5.60848 * 13 12 11 15 15 N 1.34773 * 119.99832 * 185.60627 * 13 12 11 16 16 C 1.46498 * 120.00238 * 0.02562 * 15 13 12 17 17 C 1.46505 * 119.99985 * 179.97438 * 15 13 12 18 18 C 1.50701 * 109.46746 * 90.00162 * 17 15 13 19 19 H 1.07998 * 120.00660 * 0.02562 * 18 17 15 20 20 C 1.37884 * 119.99825 * 180.02562 * 18 17 15 21 21 N 1.31513 * 119.99717 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00030 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47041 * 60.00015 * 22 20 18 24 24 H 1.48503 * 109.47313 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47292 * 300.00273 * 22 20 18 26 26 C 1.38622 * 119.99922 * 359.78422 * 11 9 8 27 27 O 1.34303 * 125.66238 * 180.17274 * 2 1 3 28 28 H 1.09003 * 109.46978 * 89.99603 * 1 2 3 29 29 H 1.08997 * 109.47503 * 209.99955 * 1 2 3 30 30 H 1.09004 * 109.47360 * 329.99929 * 1 2 3 31 31 H 1.07996 * 126.48520 * 359.97438 * 3 2 1 32 32 H 1.08007 * 126.62542 * 180.28643 * 4 3 2 33 33 H 1.08000 * 120.00131 * 359.95700 * 7 6 5 34 34 H 1.08000 * 119.88927 * 180.02562 * 8 7 6 35 35 H 1.09003 * 109.46999 * 90.00452 * 10 9 8 36 36 H 1.09000 * 109.47594 * 210.00237 * 10 9 8 37 37 H 1.09000 * 109.47224 * 330.00722 * 10 9 8 38 38 H 0.96997 * 119.99497 * 24.58074 * 12 11 9 39 39 H 1.09000 * 109.47363 * 89.99618 * 16 15 13 40 40 H 1.09003 * 109.47196 * 210.00256 * 16 15 13 41 41 H 1.09006 * 109.46691 * 329.99640 * 16 15 13 42 42 H 1.09001 * 109.47424 * 210.00118 * 17 15 13 43 43 H 1.08997 * 109.47179 * 330.00314 * 17 15 13 44 44 H 0.97003 * 119.99342 * 179.97438 * 21 20 18 45 45 H 1.08006 * 120.10344 * 180.23191 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2925 1.0946 0.0000 4 6 3.6279 0.6443 0.0066 5 6 3.5830 -0.7144 0.0044 6 6 4.7505 -1.6208 0.0100 7 6 6.0447 -1.0962 0.0190 8 6 7.1327 -1.9446 0.0247 9 6 6.9469 -3.3146 0.0222 10 6 8.1407 -4.2344 0.0291 11 6 5.6632 -3.8465 0.0133 12 7 5.4806 -5.2342 0.0113 13 6 4.3437 -5.7636 -0.4821 14 8 3.5212 -5.0459 -1.0178 15 7 4.1183 -7.0886 -0.3819 16 6 5.1089 -7.9533 0.2640 17 6 2.8821 -7.6640 -0.9177 18 6 3.0963 -8.0646 -2.3546 19 1 4.0571 -7.9069 -2.8219 20 6 2.0654 -8.6327 -3.0729 21 7 0.8955 -8.8252 -2.5038 22 14 2.3306 -9.1286 -4.8542 23 1 3.4189 -10.1361 -4.9307 24 1 1.0776 -9.7120 -5.3974 25 1 2.7063 -7.9327 -5.6504 26 6 4.5633 -3.0028 0.0114 27 8 2.2900 -1.0912 -0.0033 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.9615 2.1226 -0.0004 32 1 4.5155 1.2597 0.0128 33 1 6.1938 -0.0266 0.0211 34 1 8.1328 -1.5372 0.0321 35 1 8.4217 -4.4572 1.0584 36 1 7.8888 -5.1606 -0.4874 37 1 8.9751 -3.7506 -0.4787 38 1 6.1724 -5.8148 0.3650 39 1 4.8925 -8.0205 1.3302 40 1 5.0664 -8.9484 -0.1789 41 1 6.1050 -7.5343 0.1212 42 1 2.6065 -8.5416 -0.3330 43 1 2.0832 -6.9246 -0.8619 44 1 0.1702 -9.2245 -3.0093 45 1 3.5648 -3.4144 0.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281003377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:07 Heat of formation + Delta-G solvation = 17.970099 kcal Electronic energy + Delta-G solvation = -27440.545234 eV Core-core repulsion = 23618.064183 eV Total energy + Delta-G solvation = -3822.481051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.46922 -40.40963 -38.54570 -35.12957 -34.72812 -33.16622 -33.14651 -32.51576 -31.32250 -29.63214 -28.04081 -27.61061 -25.86421 -25.04798 -23.53229 -22.37884 -21.94710 -20.95308 -20.08390 -19.36934 -18.14542 -17.10329 -16.54442 -16.17119 -16.11998 -15.33354 -15.27430 -14.88701 -14.59990 -14.38338 -14.00991 -13.76715 -13.57516 -13.20002 -13.09190 -13.07320 -12.82582 -12.80267 -12.68955 -12.39460 -12.19911 -12.06902 -11.91146 -11.81272 -11.35831 -11.33670 -11.17804 -10.94457 -10.57926 -10.35548 -10.15394 -9.87316 -9.65184 -9.28147 -9.12256 -8.43536 -8.01508 -7.71226 -7.50756 -6.04711 -4.09514 0.84498 1.54644 2.08797 2.70794 2.91055 3.13439 3.31949 3.36505 3.40573 3.68935 4.08471 4.36013 4.47667 4.59551 4.78896 4.90173 4.98710 5.03657 5.15117 5.25485 5.29472 5.38521 5.40617 5.42195 5.49531 5.54737 5.62890 5.69443 5.77400 5.81041 5.88652 5.95008 6.00918 6.09099 6.19386 6.34523 6.47892 6.53578 6.59605 6.71617 6.81968 7.21772 7.27895 7.32049 7.47062 7.63277 7.92540 8.21584 8.52121 8.90456 9.18376 9.55693 11.03192 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009805 B = 0.003681 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.022445 B = 7604.392513 C = 9602.478730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.009 4.009 3 C -0.216 4.216 4 C -0.197 4.197 5 C 0.038 3.962 6 C -0.006 4.006 7 C -0.126 4.126 8 C -0.095 4.095 9 C -0.125 4.125 10 C -0.113 4.113 11 C 0.188 3.812 12 N -0.691 5.691 13 C 0.695 3.305 14 O -0.562 6.562 15 N -0.611 5.611 16 C 0.083 3.917 17 C 0.260 3.740 18 C -0.529 4.529 19 H 0.056 0.944 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.111 4.111 27 O -0.161 6.161 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.403 0.597 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.035 0.965 43 H 0.046 0.954 44 H 0.264 0.736 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.536 15.165 9.444 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.060 4.060 3 C -0.235 4.235 4 C -0.216 4.216 5 C -0.012 4.012 6 C -0.007 4.007 7 C -0.145 4.145 8 C -0.114 4.114 9 C -0.128 4.128 10 C -0.169 4.169 11 C 0.091 3.909 12 N -0.339 5.339 13 C 0.396 3.604 14 O -0.438 6.438 15 N -0.346 5.346 16 C -0.061 4.061 17 C 0.141 3.859 18 C -0.568 4.568 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.533 5.533 22 Si 0.726 3.274 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.202 1.202 26 C -0.132 4.132 27 O -0.057 6.057 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.240 0.760 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.545 15.136 9.012 20.036 hybrid contribution 0.562 -0.492 -0.947 1.206 sum 10.107 14.644 8.064 19.535 Atomic orbital electron populations 1.20329 0.85144 1.04010 1.03716 1.22567 0.94149 0.84095 1.05149 1.21433 0.92614 0.99183 1.10260 1.21666 0.98113 0.93160 1.08684 1.20434 0.81797 0.92644 1.06298 1.17602 0.89200 0.91216 1.02635 1.20828 0.90529 0.99676 1.03460 1.20569 0.98432 0.91673 1.00708 1.19649 0.92953 0.94737 1.05491 1.20712 0.95460 0.98672 1.02090 1.17281 0.92737 0.82599 0.98287 1.43051 1.20638 1.05011 1.65238 1.15960 0.81591 0.83218 0.79582 1.90883 1.45836 1.58999 1.48049 1.47538 1.23045 1.04027 1.59969 1.21607 0.90795 0.96716 0.96986 1.19265 0.79537 0.93739 0.93394 1.21411 0.98106 1.40436 0.96810 0.92550 1.24917 0.94894 0.95691 0.98477 1.69922 1.02351 1.43977 1.37079 0.86558 0.77373 0.78746 0.84740 1.20270 1.21128 1.20185 1.21664 1.00718 0.91324 0.99499 1.84109 1.16006 1.34668 1.70875 0.89939 0.90289 0.89458 0.83486 0.83362 0.85790 0.85413 0.91239 0.91757 0.91105 0.75997 0.93498 0.90151 0.93303 0.94671 0.93613 0.92634 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.41 36.00 0.37 -0.37 16 2 C -0.01 -0.12 7.31 -35.55 -0.26 -0.38 16 3 C -0.22 -2.67 10.78 -39.80 -0.43 -3.10 16 4 C -0.20 -2.61 10.26 -39.39 -0.40 -3.01 16 5 C 0.04 0.62 7.03 -36.50 -0.26 0.36 16 6 C -0.01 -0.09 5.87 -105.01 -0.62 -0.71 16 7 C -0.13 -1.59 9.56 -39.16 -0.37 -1.96 16 8 C -0.10 -1.10 9.67 -39.67 -0.38 -1.48 16 9 C -0.12 -1.61 5.90 -104.35 -0.62 -2.23 16 10 C -0.11 -1.08 9.44 36.01 0.34 -0.74 16 11 C 0.19 3.09 6.41 -83.73 -0.54 2.56 16 12 N -0.69 -11.53 4.85 -14.26 -0.07 -11.60 16 13 C 0.69 15.09 8.08 -86.93 -0.70 14.38 16 14 O -0.56 -14.64 13.08 5.29 0.07 -14.57 16 15 N -0.61 -13.05 2.86 -188.74 -0.54 -13.59 16 16 C 0.08 1.28 10.25 59.85 0.61 1.90 16 17 C 0.26 6.81 5.16 -5.19 -0.03 6.79 16 18 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 19 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 21 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 22 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 C -0.11 -2.05 8.38 -38.98 -0.33 -2.37 16 27 O -0.16 -2.79 10.41 4.66 0.05 -2.74 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.15 1.53 7.26 -52.48 -0.38 1.15 16 33 H 0.12 1.23 6.98 -52.49 -0.37 0.86 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.65 6.97 -51.93 -0.36 0.28 16 37 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 38 H 0.40 5.28 5.07 -40.82 -0.21 5.08 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 41 H 0.05 0.59 6.29 -51.93 -0.33 0.27 16 42 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 43 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.16 3.41 5.63 -52.48 -0.30 3.11 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -35.37 377.50 -9.20 -44.56 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.09 Total: 5.19 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -4.02 Total: -4.09 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.13 Total: -51.08 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.12 Total: -17.32 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.37 -9.20 -44.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281003377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.534 kcal (2) G-P(sol) polarization free energy of solvation -35.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds