Wall clock time and date at job start Tue Mar 31 2020 14:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47021 * 234.30924 * 3 2 1 5 5 C 1.37098 * 119.99919 * 264.14050 * 4 3 2 6 6 H 1.08002 * 120.00059 * 197.44023 * 5 4 3 7 7 C 1.38952 * 120.00072 * 17.43317 * 5 4 3 8 8 N 1.31412 * 119.99787 * 21.52535 * 7 5 4 9 9 Si 1.86796 * 120.00195 * 201.52369 * 7 5 4 10 10 H 1.48500 * 109.47342 * 60.00380 * 9 7 5 11 11 H 1.48503 * 109.47104 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47391 * 300.00189 * 9 7 5 13 13 C 1.34775 * 120.00489 * 84.14025 * 4 3 2 14 14 O 1.21295 * 120.00453 * 179.97438 * 13 4 3 15 15 C 1.50703 * 119.99503 * 359.97438 * 13 4 3 16 16 N 1.46505 * 109.47162 * 179.97438 * 15 13 4 17 17 C 1.34774 * 120.00086 * 179.97438 * 16 15 13 18 18 O 1.21279 * 120.00024 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99657 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.46963 * 180.02562 * 19 17 16 21 21 C 1.50697 * 109.47340 * 180.02562 * 20 19 17 22 22 C 1.38235 * 120.00101 * 90.00094 * 21 20 19 23 23 C 1.38231 * 120.00472 * 179.73025 * 22 21 20 24 24 C 1.38236 * 119.99852 * 0.25067 * 23 22 21 25 25 C 1.50696 * 120.00192 * 180.02562 * 24 23 22 26 26 C 1.38238 * 119.99981 * 0.02895 * 24 23 22 27 27 C 1.38230 * 119.99953 * 359.95207 * 26 24 23 28 28 H 4.40634 * 5.51504 * 179.97438 * 4 1 2 29 29 H 1.09007 * 109.47004 * 114.30961 * 3 2 1 30 30 H 1.09001 * 109.47111 * 354.30960 * 3 2 1 31 31 H 0.96998 * 119.99879 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46948 * 60.00112 * 15 13 4 33 33 H 1.08997 * 109.46990 * 300.00093 * 15 13 4 34 34 H 0.97006 * 119.99296 * 0.02562 * 16 15 13 35 35 H 1.08998 * 109.47450 * 60.00708 * 19 17 16 36 36 H 1.08997 * 109.47684 * 300.00379 * 19 17 16 37 37 H 1.09004 * 109.46683 * 60.00412 * 20 19 17 38 38 H 1.08997 * 109.47027 * 300.00533 * 20 19 17 39 39 H 1.08004 * 119.99639 * 0.02562 * 22 21 20 40 40 H 1.07997 * 120.00372 * 180.27874 * 23 22 21 41 41 H 1.09000 * 109.47184 * 90.00147 * 25 24 23 42 42 H 1.08997 * 109.47638 * 210.00021 * 25 24 23 43 43 H 1.09002 * 109.47392 * 330.00600 * 25 24 23 44 44 H 1.07995 * 120.00017 * 179.97438 * 26 24 23 45 45 H 1.08005 * 120.00093 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8067 1.1218 5 6 3.4761 2.1196 0.9248 6 1 4.0884 2.6329 1.6514 7 6 3.0352 2.7898 -0.2098 8 7 1.9841 2.3510 -0.8652 9 14 3.9366 4.3143 -0.8034 10 1 5.3454 3.9656 -1.1177 11 1 3.2720 4.8387 -2.0236 12 1 3.9086 5.3512 0.2593 13 6 3.2464 0.2577 2.3475 14 8 3.6509 0.9249 3.2762 15 6 2.8698 -1.1854 2.5641 16 7 3.0808 -1.5394 3.9700 17 6 2.8084 -2.7878 4.3987 18 8 2.3892 -3.6182 3.6207 19 6 3.0250 -3.1516 5.8450 20 6 2.6427 -4.6167 6.0650 21 6 2.8585 -4.9805 7.5114 22 6 1.8347 -4.8167 8.4255 23 6 2.0308 -5.1557 9.7512 24 6 3.2526 -5.6536 10.1638 25 6 3.4664 -6.0236 11.6089 26 6 4.2784 -5.8120 9.2508 27 6 4.0821 -5.4734 7.9250 28 1 -1.0501 0.0000 -0.0003 29 1 3.0091 0.4239 -0.9366 30 1 3.0098 -1.0218 0.1019 31 1 1.6761 2.8190 -1.6570 32 1 3.4900 -1.8215 1.9326 33 1 1.8206 -1.3296 2.3062 34 1 3.4158 -0.8750 4.5924 35 1 2.4050 -2.5153 6.4766 36 1 4.0742 -3.0077 6.1028 37 1 3.2630 -5.2528 5.4335 38 1 1.5935 -4.7611 5.8070 39 1 0.8798 -4.4284 8.1030 40 1 1.2294 -5.0319 10.4645 41 1 3.1950 -7.0684 11.7604 42 1 4.5147 -5.8791 11.8698 43 1 2.8438 -5.3912 12.2419 44 1 5.2331 -6.2005 9.5732 45 1 4.8834 -5.5975 7.2116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281914347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:28 Heat of formation + Delta-G solvation = 6.037010 kcal Electronic energy + Delta-G solvation = -26125.272585 eV Core-core repulsion = 22302.274076 eV Total energy + Delta-G solvation = -3822.998509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.93801 -39.40282 -38.48811 -35.46725 -34.74590 -33.91398 -32.20454 -31.45731 -31.30351 -31.11451 -28.34468 -26.88371 -26.29925 -24.44686 -23.32429 -22.91210 -20.82419 -20.05589 -19.39976 -17.99259 -17.33277 -16.64801 -16.15115 -16.03461 -15.81559 -15.41697 -15.30221 -15.14521 -14.52092 -14.43173 -14.17802 -14.00016 -13.63025 -13.43882 -13.39205 -12.88442 -12.78428 -12.55261 -12.44881 -12.40841 -12.05620 -11.79861 -11.71343 -11.62400 -11.34022 -11.18281 -11.04597 -10.93796 -10.61230 -10.41314 -9.71922 -9.42491 -9.37028 -9.11467 -8.99055 -8.76668 -8.66741 -8.61620 -7.99574 -6.43061 -3.96557 1.11890 1.21427 2.84871 3.10546 3.19928 3.21487 3.34479 3.54909 3.62043 3.83512 4.00627 4.11901 4.56026 4.58636 4.73079 4.82341 4.82390 4.92450 4.96076 4.96740 5.15332 5.20785 5.27641 5.32854 5.40236 5.46993 5.50636 5.55978 5.64151 5.71981 5.84421 5.87505 5.93412 6.00348 6.08371 6.23121 6.24043 6.38443 6.49122 6.65142 6.68097 6.82783 6.97635 7.47046 7.81235 7.90266 8.28775 8.46876 8.76600 8.99040 9.22284 9.72783 10.57181 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025574 B = 0.001965 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.604826 B =14246.790504 C =14827.074062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.119 4.119 3 C 0.228 3.772 4 N -0.429 5.429 5 C -0.319 4.319 6 H 0.106 0.894 7 C 0.033 3.967 8 N -0.857 5.857 9 Si 0.925 3.075 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.438 3.562 14 O -0.585 6.585 15 C 0.107 3.893 16 N -0.710 5.710 17 C 0.510 3.490 18 O -0.551 6.551 19 C -0.133 4.133 20 C -0.064 4.064 21 C -0.084 4.084 22 C -0.112 4.112 23 C -0.119 4.119 24 C -0.095 4.095 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.112 4.112 28 H 0.200 0.800 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.271 0.729 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.411 0.589 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.120 0.880 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.486 -14.851 15.201 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.120 4.120 3 C 0.105 3.895 4 N -0.146 5.146 5 C -0.446 4.446 6 H 0.124 0.876 7 C -0.172 4.172 8 N -0.494 5.494 9 Si 0.751 3.249 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.226 3.774 14 O -0.471 6.471 15 C -0.020 4.020 16 N -0.364 5.364 17 C 0.296 3.704 18 O -0.429 6.429 19 C -0.173 4.173 20 C -0.102 4.102 21 C -0.084 4.084 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.095 4.095 25 C -0.170 4.170 26 C -0.138 4.138 27 C -0.130 4.130 28 H 0.217 0.783 29 H 0.131 0.869 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.248 0.752 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.138 0.862 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.307 -15.006 14.887 21.178 hybrid contribution 0.077 1.254 -0.288 1.289 sum 1.384 -13.752 14.599 20.104 Atomic orbital electron populations 1.24298 0.95401 1.05057 1.02421 1.23071 0.94288 0.96234 0.98427 1.18331 0.84474 0.93346 0.93372 1.43642 1.54922 1.10812 1.05246 1.19633 1.30605 0.86719 1.07689 0.87637 1.25338 0.95042 0.99330 0.97481 1.70090 1.19341 1.40984 1.18984 0.86028 0.79600 0.81108 0.78183 1.19774 1.20963 1.19793 1.19904 0.85498 0.88600 0.83396 1.90498 1.52061 1.63589 1.40919 1.21064 1.02456 0.95556 0.82957 1.45795 1.66615 1.12770 1.11179 1.20615 0.77510 0.81789 0.90467 1.90686 1.45977 1.49193 1.57039 1.21622 1.04185 0.97906 0.93575 1.20332 1.03614 0.94749 0.91510 1.19944 0.93880 0.98899 0.95712 1.21092 0.98988 0.99898 0.93018 1.21020 0.96789 0.99933 0.96004 1.19919 0.94056 0.99506 0.96023 1.20781 1.02400 1.01635 0.92226 1.21017 0.98719 1.00823 0.93205 1.21086 0.96853 0.99154 0.95915 0.78288 0.86946 0.91670 0.91864 0.90030 0.89583 0.75176 0.88752 0.88755 0.90115 0.90116 0.85936 0.86216 0.91336 0.91635 0.91632 0.86223 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.24 19.25 29.55 0.57 -4.67 16 2 C -0.12 -2.64 10.87 -37.12 -0.40 -3.04 16 3 C 0.23 4.93 4.91 -6.83 -0.03 4.90 16 4 N -0.43 -10.47 2.60 -117.93 -0.31 -10.77 16 5 C -0.32 -8.47 9.33 -14.93 -0.14 -8.61 16 6 H 0.11 2.93 7.38 -52.49 -0.39 2.54 16 7 C 0.03 0.84 4.87 -17.47 -0.08 0.76 16 8 N -0.86 -21.87 9.48 55.50 0.53 -21.35 16 9 Si 0.92 19.85 29.60 -169.99 -5.03 14.82 16 10 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 C 0.44 10.18 7.63 -10.98 -0.08 10.10 16 14 O -0.59 -15.04 15.31 5.54 0.08 -14.95 16 15 C 0.11 2.05 4.76 -5.19 -0.02 2.02 16 16 N -0.71 -11.92 5.53 -61.47 -0.34 -12.26 16 17 C 0.51 7.86 7.83 -10.99 -0.09 7.77 16 18 O -0.55 -10.16 15.98 5.56 0.09 -10.07 16 19 C -0.13 -1.48 5.68 -27.88 -0.16 -1.64 16 20 C -0.06 -0.69 4.63 -27.88 -0.13 -0.82 16 21 C -0.08 -0.84 5.13 -104.62 -0.54 -1.38 16 22 C -0.11 -1.07 9.70 -39.58 -0.38 -1.45 16 23 C -0.12 -1.05 9.70 -39.58 -0.38 -1.44 16 24 C -0.10 -0.81 5.88 -104.62 -0.62 -1.43 16 25 C -0.11 -0.69 10.01 36.00 0.36 -0.33 16 26 C -0.12 -1.04 9.70 -39.58 -0.38 -1.43 16 27 C -0.11 -1.05 9.70 -39.58 -0.38 -1.44 16 28 H 0.20 3.37 7.80 -54.08 -0.42 2.95 16 29 H 0.11 2.54 6.44 -51.93 -0.33 2.21 16 30 H 0.07 1.19 6.69 -51.93 -0.35 0.84 16 31 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 32 H 0.08 1.46 7.42 -51.93 -0.39 1.08 16 33 H 0.09 1.70 7.50 -51.93 -0.39 1.31 16 34 H 0.41 6.71 7.44 -40.82 -0.30 6.40 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.90 8.05 -51.93 -0.42 0.49 16 38 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 43 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -31.58 387.32 -8.38 -39.96 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.34 Total: 10.91 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.90 Total: -2.11 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.12 Total: -44.38 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: 0.17 Total: -25.02 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.58 -8.38 -39.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281914347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.997 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds