Wall clock time and date at job start Tue Mar 31 2020 14:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47021 * 234.30924 * 3 2 1 5 5 C 1.37098 * 119.99919 * 264.14050 * 4 3 2 6 6 H 1.08002 * 120.00059 * 197.44023 * 5 4 3 7 7 C 1.38952 * 120.00072 * 17.43317 * 5 4 3 8 8 N 1.31412 * 119.99787 * 21.52535 * 7 5 4 9 9 Si 1.86796 * 120.00195 * 201.52369 * 7 5 4 10 10 H 1.48500 * 109.47342 * 60.00380 * 9 7 5 11 11 H 1.48503 * 109.47104 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47391 * 300.00189 * 9 7 5 13 13 C 1.34775 * 120.00489 * 84.14025 * 4 3 2 14 14 O 1.21295 * 120.00453 * 179.97438 * 13 4 3 15 15 C 1.50703 * 119.99503 * 359.97438 * 13 4 3 16 16 N 1.46505 * 109.47162 * 179.97438 * 15 13 4 17 17 C 1.34774 * 120.00086 * 179.97438 * 16 15 13 18 18 O 1.21279 * 120.00024 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99657 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.46963 * 180.02562 * 19 17 16 21 21 C 1.50697 * 109.47340 * 180.02562 * 20 19 17 22 22 C 1.38235 * 120.00101 * 90.00094 * 21 20 19 23 23 C 1.38231 * 120.00472 * 179.73025 * 22 21 20 24 24 C 1.38236 * 119.99852 * 0.25067 * 23 22 21 25 25 C 1.50696 * 120.00192 * 180.02562 * 24 23 22 26 26 C 1.38238 * 119.99981 * 0.02895 * 24 23 22 27 27 C 1.38230 * 119.99953 * 359.95207 * 26 24 23 28 28 H 4.40634 * 5.51504 * 179.97438 * 4 1 2 29 29 H 1.09007 * 109.47004 * 114.30961 * 3 2 1 30 30 H 1.09001 * 109.47111 * 354.30960 * 3 2 1 31 31 H 0.96998 * 119.99879 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46948 * 60.00112 * 15 13 4 33 33 H 1.08997 * 109.46990 * 300.00093 * 15 13 4 34 34 H 0.97006 * 119.99296 * 0.02562 * 16 15 13 35 35 H 1.08998 * 109.47450 * 60.00708 * 19 17 16 36 36 H 1.08997 * 109.47684 * 300.00379 * 19 17 16 37 37 H 1.09004 * 109.46683 * 60.00412 * 20 19 17 38 38 H 1.08997 * 109.47027 * 300.00533 * 20 19 17 39 39 H 1.08004 * 119.99639 * 0.02562 * 22 21 20 40 40 H 1.07997 * 120.00372 * 180.27874 * 23 22 21 41 41 H 1.09000 * 109.47184 * 90.00147 * 25 24 23 42 42 H 1.08997 * 109.47638 * 210.00021 * 25 24 23 43 43 H 1.09002 * 109.47392 * 330.00600 * 25 24 23 44 44 H 1.07995 * 120.00017 * 179.97438 * 26 24 23 45 45 H 1.08005 * 120.00093 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8067 1.1218 5 6 3.4761 2.1196 0.9248 6 1 4.0884 2.6329 1.6514 7 6 3.0352 2.7898 -0.2098 8 7 1.9841 2.3510 -0.8652 9 14 3.9366 4.3143 -0.8034 10 1 5.3454 3.9656 -1.1177 11 1 3.2720 4.8387 -2.0236 12 1 3.9086 5.3512 0.2593 13 6 3.2464 0.2577 2.3475 14 8 3.6509 0.9249 3.2762 15 6 2.8698 -1.1854 2.5641 16 7 3.0808 -1.5394 3.9700 17 6 2.8084 -2.7878 4.3987 18 8 2.3892 -3.6182 3.6207 19 6 3.0250 -3.1516 5.8450 20 6 2.6427 -4.6167 6.0650 21 6 2.8585 -4.9805 7.5114 22 6 1.8347 -4.8167 8.4255 23 6 2.0308 -5.1557 9.7512 24 6 3.2526 -5.6536 10.1638 25 6 3.4664 -6.0236 11.6089 26 6 4.2784 -5.8120 9.2508 27 6 4.0821 -5.4734 7.9250 28 1 -1.0501 0.0000 -0.0003 29 1 3.0091 0.4239 -0.9366 30 1 3.0098 -1.0218 0.1019 31 1 1.6761 2.8190 -1.6570 32 1 3.4900 -1.8215 1.9326 33 1 1.8206 -1.3296 2.3062 34 1 3.4158 -0.8750 4.5924 35 1 2.4050 -2.5153 6.4766 36 1 4.0742 -3.0077 6.1028 37 1 3.2630 -5.2528 5.4335 38 1 1.5935 -4.7611 5.8070 39 1 0.8798 -4.4284 8.1030 40 1 1.2294 -5.0319 10.4645 41 1 3.1950 -7.0684 11.7604 42 1 4.5147 -5.8791 11.8698 43 1 2.8438 -5.3912 12.2419 44 1 5.2331 -6.2005 9.5732 45 1 4.8834 -5.5975 7.2116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281914347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:28 Heat of formation + Delta-G solvation = -11.195634 kcal Electronic energy + Delta-G solvation = -26126.019848 eV Core-core repulsion = 22302.274076 eV Total energy + Delta-G solvation = -3823.745772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.19362 -40.45338 -39.96150 -37.26913 -35.61765 -35.33055 -34.04590 -33.09253 -32.24985 -31.76689 -29.69647 -28.27134 -27.61884 -26.10390 -24.30565 -23.56909 -21.65267 -21.27384 -21.06251 -19.76700 -18.72755 -18.33613 -17.54478 -17.10033 -17.04741 -16.64173 -16.45086 -16.25672 -15.91136 -15.84049 -15.69154 -14.84434 -14.79027 -14.55825 -14.26722 -14.19336 -14.05892 -13.79668 -13.62955 -13.53075 -13.36706 -13.30711 -12.97023 -12.78711 -12.50604 -12.42104 -12.16580 -12.10510 -11.87955 -11.67761 -11.22444 -11.14919 -11.00351 -10.72590 -10.48292 -10.17160 -9.90307 -9.78317 -9.34456 -8.35317 -5.96863 0.43617 0.54542 1.36239 1.44202 1.53311 1.60569 1.77508 1.98132 2.21979 2.30712 2.36705 2.87481 3.01265 3.11341 3.65782 3.78982 3.92715 3.93661 4.03203 4.12576 4.18652 4.21255 4.25650 4.35629 4.43996 4.52958 4.63064 4.63534 4.69045 4.85117 4.86411 4.92123 4.97974 4.99933 5.16280 5.26167 5.27971 5.36036 5.38109 5.45329 5.56333 5.75355 5.77891 5.98575 6.17791 6.35278 6.52731 7.06094 7.10263 7.17434 7.34008 7.84705 8.62789 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025574 B = 0.001965 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.604826 B =14246.790504 C =14827.074062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.158 4.158 3 C 0.230 3.770 4 N -0.440 5.440 5 C -0.354 4.354 6 H 0.082 0.918 7 C 0.004 3.996 8 N -0.868 5.868 9 Si 0.987 3.013 10 H -0.266 1.266 11 H -0.275 1.275 12 H -0.278 1.278 13 C 0.433 3.567 14 O -0.617 6.617 15 C 0.122 3.878 16 N -0.712 5.712 17 C 0.512 3.488 18 O -0.581 6.581 19 C -0.122 4.122 20 C -0.057 4.057 21 C -0.097 4.097 22 C -0.123 4.123 23 C -0.129 4.129 24 C -0.101 4.101 25 C -0.113 4.113 26 C -0.128 4.128 27 C -0.122 4.122 28 H 0.233 0.767 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.274 0.726 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.414 0.586 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.137 0.863 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.459 -15.446 16.059 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.159 4.159 3 C 0.107 3.893 4 N -0.157 5.157 5 C -0.481 4.481 6 H 0.100 0.900 7 C -0.200 4.200 8 N -0.504 5.504 9 Si 0.811 3.189 10 H -0.191 1.191 11 H -0.200 1.200 12 H -0.204 1.204 13 C 0.222 3.778 14 O -0.504 6.504 15 C -0.006 4.006 16 N -0.366 5.366 17 C 0.300 3.700 18 O -0.461 6.461 19 C -0.162 4.162 20 C -0.094 4.094 21 C -0.097 4.097 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.101 4.101 25 C -0.169 4.169 26 C -0.146 4.146 27 C -0.139 4.139 28 H 0.249 0.751 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.252 0.748 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.155 0.845 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.272 -15.625 15.742 22.216 hybrid contribution 0.029 1.404 -0.513 1.495 sum 1.301 -14.221 15.228 20.876 Atomic orbital electron populations 1.25165 0.96408 1.03580 1.00817 1.23401 0.95002 0.97636 0.99907 1.18381 0.84670 0.94338 0.91863 1.43815 1.54992 1.10568 1.06348 1.19579 1.31946 0.88132 1.08430 0.90013 1.26030 0.95308 1.01810 0.96873 1.70179 1.19591 1.41803 1.18874 0.85096 0.78752 0.77543 0.77527 1.19067 1.19964 1.20366 1.20534 0.84453 0.90047 0.82758 1.90463 1.53272 1.64871 1.41829 1.20817 1.02175 0.92790 0.84825 1.45852 1.67003 1.13504 1.10203 1.21319 0.76130 0.80637 0.91871 1.90671 1.47298 1.49854 1.58312 1.21640 1.05698 0.98421 0.90440 1.20216 1.02802 0.94240 0.92177 1.19890 0.94541 1.00098 0.95137 1.21266 0.99222 1.00138 0.93458 1.21282 0.97547 0.99784 0.96059 1.20279 0.93840 0.98727 0.97299 1.20824 1.03174 1.02233 0.90711 1.21290 0.99644 1.00674 0.93005 1.21272 0.96914 0.99144 0.96614 0.75073 0.88339 0.88611 0.91622 0.88678 0.90068 0.74831 0.87188 0.86867 0.90826 0.91089 0.85338 0.84646 0.90518 0.90812 0.90882 0.84534 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.66 19.25 74.32 1.43 -8.23 16 2 C -0.16 -6.95 10.87 31.13 0.34 -6.61 16 3 C 0.23 9.98 4.91 84.57 0.42 10.40 16 4 N -0.44 -21.83 2.60 -645.41 -1.68 -23.51 16 5 C -0.35 -19.18 9.33 84.04 0.78 -18.40 16 6 H 0.08 4.72 7.38 -2.91 -0.02 4.70 16 7 C 0.00 0.21 4.87 84.93 0.41 0.62 16 8 N -0.87 -44.15 9.48 21.66 0.21 -43.94 16 9 Si 0.99 40.71 29.60 68.60 2.03 42.74 16 10 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 12 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 13 C 0.43 20.41 7.63 87.66 0.67 21.08 16 14 O -0.62 -32.40 15.31 -3.08 -0.05 -32.44 16 15 C 0.12 4.63 4.76 85.63 0.41 5.04 16 16 N -0.71 -23.56 5.53 -466.78 -2.58 -26.14 16 17 C 0.51 15.39 7.83 87.66 0.69 16.07 16 18 O -0.58 -21.19 15.98 -3.03 -0.05 -21.24 16 19 C -0.12 -2.58 5.68 29.85 0.17 -2.41 16 20 C -0.06 -1.18 4.63 29.85 0.14 -1.04 16 21 C -0.10 -1.84 5.13 -19.87 -0.10 -1.94 16 22 C -0.12 -2.21 9.70 22.27 0.22 -1.99 16 23 C -0.13 -2.07 9.70 22.27 0.22 -1.86 16 24 C -0.10 -1.55 5.88 -19.87 -0.12 -1.67 16 25 C -0.11 -1.12 10.01 71.23 0.71 -0.41 16 26 C -0.13 -2.02 9.70 22.27 0.22 -1.81 16 27 C -0.12 -2.13 9.70 22.27 0.22 -1.92 16 28 H 0.23 7.25 7.80 -4.41 -0.03 7.22 16 29 H 0.10 4.50 6.44 -2.38 -0.02 4.49 16 30 H 0.10 3.45 6.69 -2.39 -0.02 3.43 16 31 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 32 H 0.10 3.35 7.42 -2.38 -0.02 3.33 16 33 H 0.08 3.20 7.50 -2.39 -0.02 3.18 16 34 H 0.41 13.37 7.44 -92.70 -0.69 12.68 16 35 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 1.62 8.05 -2.38 -0.02 1.60 16 38 H 0.07 1.60 8.04 -2.39 -0.02 1.58 16 39 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.07 0.61 8.09 -2.39 -0.02 0.60 16 43 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 44 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 45 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -67.97 387.32 5.00 -62.97 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: 0.31 Total: 36.63 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 6.81 Total: 4.93 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -4.05 Total: -93.59 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -0.10 Total: -53.68 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -67.97 5.00 -62.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281914347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.773 kcal (2) G-P(sol) polarization free energy of solvation -67.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds