Wall clock time and date at job start Tue Mar 31 2020 15:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34791 * 117.00283 * 2 1 4 4 O 1.21548 * 119.99734 * 0.02562 * 3 2 1 5 5 C 1.47108 * 120.00371 * 179.97438 * 3 2 1 6 6 C 1.46749 * 127.02179 * 359.97385 * 5 3 2 7 7 C 1.34431 * 106.37147 * 180.02562 * 6 5 3 8 8 C 1.50704 * 125.45831 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.47016 * 95.02034 * 8 7 6 10 10 C 1.38859 * 119.99754 * 180.02562 * 9 8 7 11 11 C 1.39570 * 119.83888 * 180.02562 * 10 9 8 12 12 C 1.36340 * 120.15779 * 180.25511 * 11 10 9 13 13 C 1.40893 * 119.83593 * 359.49782 * 12 11 10 14 14 C 1.41133 * 120.15364 * 180.25652 * 13 12 11 15 15 H 1.07994 * 120.00344 * 24.83920 * 14 13 12 16 16 C 1.39866 * 119.99916 * 204.83980 * 14 13 12 17 17 N 1.30910 * 119.99864 * 17.95871 * 16 14 13 18 18 Si 1.86802 * 120.00165 * 197.96719 * 16 14 13 19 19 H 1.48495 * 109.47078 * 89.99884 * 18 16 14 20 20 H 1.48504 * 109.46830 * 209.99867 * 18 16 14 21 21 H 1.48501 * 109.46885 * 329.99482 * 18 16 14 22 22 C 1.40884 * 119.68717 * 0.47157 * 13 12 11 23 23 C 1.36338 * 119.83581 * 359.78315 * 22 13 12 24 24 N 1.36433 * 109.08454 * 0.24242 * 7 6 5 25 25 C 1.46498 * 124.80595 * 179.74229 * 24 7 6 26 26 C 1.34619 * 110.38241 * 359.58932 * 24 7 6 27 27 C 1.50700 * 125.89753 * 180.18364 * 26 24 7 28 28 H 1.08993 * 109.47304 * 300.00012 * 1 2 3 29 29 H 1.09004 * 109.46831 * 60.00070 * 1 2 3 30 30 H 1.09000 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.07993 * 126.81086 * 0.02562 * 6 5 3 32 32 H 1.09002 * 109.46422 * 335.02277 * 8 7 6 33 33 H 1.08997 * 109.47019 * 215.02003 * 8 7 6 34 34 H 0.97005 * 120.00187 * 0.02562 * 9 8 7 35 35 H 1.07992 * 119.92182 * 359.96946 * 11 10 9 36 36 H 1.07995 * 120.08393 * 179.74144 * 12 11 10 37 37 H 0.97001 * 120.00040 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.07818 * 179.75449 * 22 13 12 39 39 H 1.08011 * 119.91579 * 179.97438 * 23 22 13 40 40 H 1.08998 * 109.47395 * 90.00008 * 25 24 7 41 41 H 1.09004 * 109.46986 * 210.00263 * 25 24 7 42 42 H 1.09007 * 109.47411 * 330.00032 * 25 24 7 43 43 H 1.08997 * 109.47656 * 270.28671 * 27 26 24 44 44 H 1.08997 * 109.46987 * 30.28826 * 27 26 24 45 45 H 1.09002 * 109.47083 * 150.28627 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4020 2.2204 0.0005 5 6 3.5330 1.2780 0.0006 6 6 4.4767 0.1542 0.0017 7 6 5.7081 0.6935 0.0025 8 6 7.0014 -0.0802 0.0043 9 7 7.4838 -0.2283 -1.3711 10 6 8.6667 -0.9108 -1.6222 11 6 9.1235 -1.0494 -2.9337 12 6 10.2814 -1.7227 -3.1882 13 6 11.0227 -2.2701 -2.1224 14 6 12.2250 -2.9637 -2.3777 15 1 12.7895 -2.7540 -3.2742 16 6 12.6855 -3.9226 -1.4696 17 7 11.8663 -4.4336 -0.5856 18 14 14.4696 -4.4741 -1.5181 19 1 15.2810 -3.6040 -0.6295 20 1 14.5653 -5.8817 -1.0544 21 1 14.9806 -4.3753 -2.9089 22 6 10.5558 -2.1257 -0.8010 23 6 9.3935 -1.4543 -0.5620 24 7 5.5995 2.0535 0.0073 25 6 6.7320 2.9828 0.0149 26 6 4.3043 2.4204 0.0008 27 6 3.7869 3.8358 -0.0006 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.2308 -0.8973 0.0019 32 1 6.8344 -1.0658 0.4389 33 1 7.7447 0.4559 0.5943 34 1 6.9769 0.1505 -2.1063 35 1 8.5561 -0.6263 -3.7493 36 1 10.6316 -1.8328 -4.2038 37 1 12.1855 -5.0989 0.0440 38 1 11.1169 -2.5461 0.0204 39 1 9.0340 -1.3432 0.4505 40 1 7.0165 3.2173 -1.0108 41 1 6.4465 3.8993 0.5314 42 1 7.5757 2.5233 0.5300 43 1 3.6615 4.1779 1.0267 44 1 4.4983 4.4822 -0.5145 45 1 2.8266 3.8711 -0.5151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284091266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:52 Heat of formation + Delta-G solvation = -16.131184 kcal Electronic energy + Delta-G solvation = -26547.748007 eV Core-core repulsion = 22723.788214 eV Total energy + Delta-G solvation = -3823.959794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.67105 -39.97403 -37.96197 -36.40903 -35.21264 -33.24053 -33.06655 -31.77052 -29.50623 -29.22998 -28.48386 -27.29516 -26.55563 -24.89627 -23.75951 -22.43119 -21.13722 -20.51944 -20.00334 -18.85992 -17.58447 -17.23111 -16.78557 -16.43279 -15.99950 -15.82028 -15.57373 -14.98581 -14.68803 -14.33860 -13.86924 -13.66950 -13.55235 -13.41952 -13.14631 -12.94878 -12.84022 -12.70704 -12.57373 -12.34850 -12.24627 -12.11819 -11.92920 -11.69462 -11.56841 -11.19841 -11.06121 -10.86695 -10.84342 -10.51776 -10.46438 -9.72384 -9.32946 -9.26916 -8.82084 -8.58742 -8.26635 -7.52904 -6.66968 -6.43361 -4.06337 1.33976 2.13634 2.40557 2.89078 2.96162 3.07076 3.13937 3.17226 3.18968 3.32812 4.03660 4.38308 4.46366 4.54118 4.65286 4.73624 4.85972 4.93634 4.96269 5.02886 5.04420 5.21717 5.29543 5.33581 5.40315 5.57294 5.70364 5.72954 5.79940 5.84180 6.03122 6.23530 6.28073 6.37301 6.61678 6.86621 6.90271 6.92758 7.00320 7.17392 7.33234 7.50978 7.65742 7.80382 7.82475 8.12498 8.25009 8.44619 8.64724 8.76261 9.03578 9.12048 10.35019 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023057 B = 0.002153 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.086255 B =12999.175225 C =13565.828786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.354 6.354 3 C 0.545 3.455 4 O -0.528 6.528 5 C -0.237 4.237 6 C -0.122 4.122 7 C 0.002 3.998 8 C 0.208 3.792 9 N -0.758 5.758 10 C 0.090 3.910 11 C -0.156 4.156 12 C -0.187 4.187 13 C 0.075 3.925 14 C -0.467 4.467 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.806 5.806 18 Si 0.903 3.097 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.265 1.265 22 C -0.125 4.125 23 C -0.163 4.163 24 N -0.426 5.426 25 C 0.064 3.936 26 C 0.120 3.880 27 C -0.095 4.095 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.153 0.847 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.385 0.615 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.276 0.724 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.307 12.313 4.199 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.270 6.270 3 C 0.392 3.608 4 O -0.420 6.420 5 C -0.245 4.245 6 C -0.146 4.146 7 C -0.105 4.105 8 C 0.083 3.917 9 N -0.395 5.395 10 C -0.007 4.007 11 C -0.178 4.178 12 C -0.207 4.207 13 C 0.072 3.928 14 C -0.498 4.498 15 H 0.091 0.909 16 C -0.141 4.141 17 N -0.434 5.434 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.189 1.189 22 C -0.145 4.145 23 C -0.185 4.185 24 N -0.101 5.101 25 C -0.077 4.077 26 C 0.001 3.999 27 C -0.153 4.153 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.171 0.829 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.218 0.782 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.136 0.864 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.186 12.553 4.587 20.230 hybrid contribution 0.406 -0.271 -0.234 0.542 sum -14.780 12.282 4.352 19.704 Atomic orbital electron populations 1.23213 0.76577 1.03482 1.02289 1.86595 1.22942 1.32850 1.84606 1.20100 0.87785 0.81008 0.71857 1.90777 1.66858 1.35929 1.48390 1.19253 0.88878 0.93412 1.23002 1.21916 0.89781 0.98323 1.04600 1.20439 0.97095 0.81725 1.11265 1.19414 0.88273 0.97430 0.86622 1.43895 1.25586 1.65292 1.04729 1.17307 0.88617 1.01178 0.93558 1.19798 0.98953 1.05853 0.93178 1.20553 0.96399 1.06282 0.97456 1.17509 0.92677 0.91783 0.90819 1.19377 1.06045 1.18199 1.06147 0.90922 1.25804 0.98804 0.95082 0.94407 1.69856 1.35211 1.22174 1.16114 0.86399 0.83265 0.77964 0.79522 1.19553 1.20565 1.18863 1.20934 0.96201 0.99844 0.97518 1.20076 0.98244 1.04794 0.95417 1.43517 1.05520 1.06392 1.54686 1.22181 0.88217 0.93136 1.04197 1.20516 0.82585 0.95863 1.00982 1.20592 1.02658 0.88496 1.03510 0.92101 0.92088 0.88226 0.82919 0.90921 0.92833 0.78209 0.89659 0.89046 0.91282 0.86366 0.89434 0.90131 0.89630 0.88814 0.90234 0.91388 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.40 16 2 O -0.35 -4.37 10.47 -40.74 -0.43 -4.79 16 3 C 0.54 7.40 7.95 34.33 0.27 7.68 16 4 O -0.53 -7.68 14.67 -19.30 -0.28 -7.97 16 5 C -0.24 -3.15 6.33 -103.01 -0.65 -3.80 16 6 C -0.12 -1.62 10.89 -37.49 -0.41 -2.02 16 7 C 0.00 0.03 6.21 -81.89 -0.51 -0.48 16 8 C 0.21 2.94 4.99 -5.19 -0.03 2.92 16 9 N -0.76 -12.55 5.69 -59.67 -0.34 -12.89 16 10 C 0.09 1.87 6.67 -83.69 -0.56 1.32 16 11 C -0.16 -3.41 9.82 -39.77 -0.39 -3.80 16 12 C -0.19 -4.55 9.74 -39.26 -0.38 -4.93 16 13 C 0.08 1.99 5.57 -106.79 -0.60 1.40 16 14 C -0.47 -12.51 9.03 -37.88 -0.34 -12.85 16 15 H 0.07 1.89 7.91 -52.49 -0.41 1.47 16 16 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 17 N -0.81 -21.16 10.96 55.54 0.61 -20.55 16 18 Si 0.90 19.03 29.60 -169.99 -5.03 13.99 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 21 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 22 C -0.13 -3.20 8.64 -39.27 -0.34 -3.54 16 23 C -0.16 -3.67 9.23 -39.77 -0.37 -4.04 16 24 N -0.43 -4.73 3.08 -115.00 -0.35 -5.08 16 25 C 0.06 0.52 10.39 59.85 0.62 1.14 16 26 C 0.12 1.39 6.93 -81.52 -0.56 0.82 16 27 C -0.10 -0.85 9.28 36.01 0.33 -0.51 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.07 1.07 7.92 -51.93 -0.41 0.66 16 33 H 0.05 0.74 6.87 -51.93 -0.36 0.38 16 34 H 0.39 6.02 8.46 -40.82 -0.35 5.67 16 35 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 37 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 38 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 39 H 0.09 1.77 6.68 -52.48 -0.35 1.42 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.49 7.51 -51.93 -0.39 0.10 16 42 H 0.09 0.78 6.98 -51.92 -0.36 0.41 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.46 7.60 -51.93 -0.39 0.06 16 45 H 0.10 1.01 6.51 -51.93 -0.34 0.67 16 LS Contribution 378.91 15.07 5.71 5.71 Total: -1.00 -30.44 378.91 -9.25 -39.69 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.20 Total: 9.39 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.93 Total: -17.50 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -0.09 Total: -38.52 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.71 Total: -12.76 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.44 -9.25 -39.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284091266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.554 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds