Wall clock time and date at job start Tue Mar 31 2020 15:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34791 * 117.00283 * 2 1 4 4 O 1.21548 * 119.99734 * 0.02562 * 3 2 1 5 5 C 1.47108 * 120.00371 * 179.97438 * 3 2 1 6 6 C 1.46749 * 127.02179 * 359.97385 * 5 3 2 7 7 C 1.34431 * 106.37147 * 180.02562 * 6 5 3 8 8 C 1.50704 * 125.45831 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.47016 * 95.02034 * 8 7 6 10 10 C 1.38859 * 119.99754 * 180.02562 * 9 8 7 11 11 C 1.39570 * 119.83888 * 180.02562 * 10 9 8 12 12 C 1.36340 * 120.15779 * 180.25511 * 11 10 9 13 13 C 1.40893 * 119.83593 * 359.49782 * 12 11 10 14 14 C 1.41133 * 120.15364 * 180.25652 * 13 12 11 15 15 H 1.07994 * 120.00344 * 24.83920 * 14 13 12 16 16 C 1.39866 * 119.99916 * 204.83980 * 14 13 12 17 17 N 1.30910 * 119.99864 * 17.95871 * 16 14 13 18 18 Si 1.86802 * 120.00165 * 197.96719 * 16 14 13 19 19 H 1.48495 * 109.47078 * 89.99884 * 18 16 14 20 20 H 1.48504 * 109.46830 * 209.99867 * 18 16 14 21 21 H 1.48501 * 109.46885 * 329.99482 * 18 16 14 22 22 C 1.40884 * 119.68717 * 0.47157 * 13 12 11 23 23 C 1.36338 * 119.83581 * 359.78315 * 22 13 12 24 24 N 1.36433 * 109.08454 * 0.24242 * 7 6 5 25 25 C 1.46498 * 124.80595 * 179.74229 * 24 7 6 26 26 C 1.34619 * 110.38241 * 359.58932 * 24 7 6 27 27 C 1.50700 * 125.89753 * 180.18364 * 26 24 7 28 28 H 1.08993 * 109.47304 * 300.00012 * 1 2 3 29 29 H 1.09004 * 109.46831 * 60.00070 * 1 2 3 30 30 H 1.09000 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.07993 * 126.81086 * 0.02562 * 6 5 3 32 32 H 1.09002 * 109.46422 * 335.02277 * 8 7 6 33 33 H 1.08997 * 109.47019 * 215.02003 * 8 7 6 34 34 H 0.97005 * 120.00187 * 0.02562 * 9 8 7 35 35 H 1.07992 * 119.92182 * 359.96946 * 11 10 9 36 36 H 1.07995 * 120.08393 * 179.74144 * 12 11 10 37 37 H 0.97001 * 120.00040 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.07818 * 179.75449 * 22 13 12 39 39 H 1.08011 * 119.91579 * 179.97438 * 23 22 13 40 40 H 1.08998 * 109.47395 * 90.00008 * 25 24 7 41 41 H 1.09004 * 109.46986 * 210.00263 * 25 24 7 42 42 H 1.09007 * 109.47411 * 330.00032 * 25 24 7 43 43 H 1.08997 * 109.47656 * 270.28671 * 27 26 24 44 44 H 1.08997 * 109.46987 * 30.28826 * 27 26 24 45 45 H 1.09002 * 109.47083 * 150.28627 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4020 2.2204 0.0005 5 6 3.5330 1.2780 0.0006 6 6 4.4767 0.1542 0.0017 7 6 5.7081 0.6935 0.0025 8 6 7.0014 -0.0802 0.0043 9 7 7.4838 -0.2283 -1.3711 10 6 8.6667 -0.9108 -1.6222 11 6 9.1235 -1.0494 -2.9337 12 6 10.2814 -1.7227 -3.1882 13 6 11.0227 -2.2701 -2.1224 14 6 12.2250 -2.9637 -2.3777 15 1 12.7895 -2.7540 -3.2742 16 6 12.6855 -3.9226 -1.4696 17 7 11.8663 -4.4336 -0.5856 18 14 14.4696 -4.4741 -1.5181 19 1 15.2810 -3.6040 -0.6295 20 1 14.5653 -5.8817 -1.0544 21 1 14.9806 -4.3753 -2.9089 22 6 10.5558 -2.1257 -0.8010 23 6 9.3935 -1.4543 -0.5620 24 7 5.5995 2.0535 0.0073 25 6 6.7320 2.9828 0.0149 26 6 4.3043 2.4204 0.0008 27 6 3.7869 3.8358 -0.0006 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.2308 -0.8973 0.0019 32 1 6.8344 -1.0658 0.4389 33 1 7.7447 0.4559 0.5943 34 1 6.9769 0.1505 -2.1063 35 1 8.5561 -0.6263 -3.7493 36 1 10.6316 -1.8328 -4.2038 37 1 12.1855 -5.0989 0.0440 38 1 11.1169 -2.5461 0.0204 39 1 9.0340 -1.3432 0.4505 40 1 7.0165 3.2173 -1.0108 41 1 6.4465 3.8993 0.5314 42 1 7.5757 2.5233 0.5300 43 1 3.6615 4.1779 1.0267 44 1 4.4983 4.4822 -0.5145 45 1 2.8266 3.8711 -0.5151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284091266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:51 Heat of formation + Delta-G solvation = -31.643363 kcal Electronic energy + Delta-G solvation = -26548.420666 eV Core-core repulsion = 22723.788214 eV Total energy + Delta-G solvation = -3824.632452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.58952 -40.92590 -39.70271 -37.37817 -36.77424 -34.91384 -33.92773 -32.88222 -31.33013 -30.74331 -29.30986 -28.58165 -27.29760 -26.28158 -25.21541 -23.46925 -22.80081 -21.83673 -21.38751 -19.78724 -19.13302 -18.59939 -18.02747 -17.37539 -17.22328 -16.87272 -16.67369 -16.44381 -16.02679 -15.55725 -15.34818 -14.79873 -14.45911 -14.38321 -14.31150 -14.27692 -13.93761 -13.89145 -13.85147 -13.55553 -13.35060 -13.17398 -13.01373 -12.94870 -12.84239 -12.74205 -12.55687 -12.43627 -12.24370 -11.73170 -11.55760 -11.48381 -11.16872 -11.06486 -10.31445 -9.73770 -9.38206 -9.22869 -8.53754 -8.16521 -5.99534 0.40410 1.12208 1.12413 1.20725 1.41479 1.53621 1.57376 1.60373 2.11369 2.20117 2.28540 2.85635 3.04461 3.56830 3.68024 3.86822 3.88830 4.00792 4.22454 4.31769 4.34466 4.36532 4.41611 4.46696 4.52076 4.58483 4.64505 4.68689 4.70945 4.75268 4.80981 5.01768 5.06080 5.12089 5.15114 5.29219 5.44977 5.47482 5.64663 5.69812 5.81131 5.97639 5.98316 6.14160 6.20963 6.40986 6.67428 6.85989 6.87348 7.10303 7.12114 7.29416 8.49513 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023057 B = 0.002153 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.086255 B =12999.175225 C =13565.828786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.541 3.459 4 O -0.545 6.545 5 C -0.267 4.267 6 C -0.130 4.130 7 C -0.004 4.004 8 C 0.211 3.789 9 N -0.746 5.746 10 C 0.116 3.884 11 C -0.163 4.163 12 C -0.196 4.196 13 C 0.035 3.965 14 C -0.505 4.505 15 H 0.066 0.934 16 C 0.032 3.968 17 N -0.840 5.840 18 Si 0.975 3.025 19 H -0.264 1.264 20 H -0.272 1.272 21 H -0.262 1.262 22 C -0.143 4.143 23 C -0.171 4.171 24 N -0.422 5.422 25 C 0.056 3.944 26 C 0.130 3.870 27 C -0.092 4.092 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.127 0.873 31 H 0.152 0.848 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.394 0.606 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.282 0.718 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.993 13.867 4.441 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.282 6.282 3 C 0.390 3.610 4 O -0.438 6.438 5 C -0.275 4.275 6 C -0.154 4.154 7 C -0.112 4.112 8 C 0.086 3.914 9 N -0.381 5.381 10 C 0.017 3.983 11 C -0.185 4.185 12 C -0.216 4.216 13 C 0.032 3.968 14 C -0.536 4.536 15 H 0.085 0.915 16 C -0.180 4.180 17 N -0.469 5.469 18 Si 0.797 3.203 19 H -0.189 1.189 20 H -0.197 1.197 21 H -0.186 1.186 22 C -0.163 4.163 23 C -0.193 4.193 24 N -0.096 5.096 25 C -0.084 4.084 26 C 0.009 3.991 27 C -0.149 4.149 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.169 0.831 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.228 0.772 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.106 0.894 41 H 0.132 0.868 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.905 14.128 4.828 21.815 hybrid contribution 0.382 -0.632 -0.306 0.799 sum -15.524 13.497 4.523 21.062 Atomic orbital electron populations 1.23509 0.74689 1.05463 1.02528 1.86578 1.24922 1.32395 1.84319 1.20233 0.88062 0.81124 0.71556 1.90755 1.67245 1.36375 1.49465 1.19465 0.89018 0.94201 1.24800 1.22014 0.90205 0.98552 1.04585 1.20121 0.96046 0.82643 1.12344 1.19417 0.89177 0.97720 0.85060 1.43912 1.23982 1.63879 1.06376 1.17355 0.89048 0.99119 0.92788 1.20067 0.98418 1.05487 0.94571 1.20743 0.97188 1.06422 0.97239 1.17829 0.93704 0.93396 0.91874 1.19582 1.07177 1.19798 1.07049 0.91545 1.26592 1.02923 0.94721 0.93782 1.69917 1.37020 1.22938 1.16993 0.85310 0.77677 0.77762 0.79534 1.18900 1.19660 1.18598 1.20872 0.97517 1.01161 0.96765 1.20238 0.97530 1.04496 0.97047 1.43676 1.06148 1.06097 1.53698 1.22459 0.87232 0.93608 1.05095 1.20939 0.82521 0.96680 0.98966 1.20658 1.02541 0.87238 1.04507 0.91796 0.91939 0.85446 0.83051 0.91338 0.91790 0.77198 0.86803 0.88732 0.90770 0.88272 0.87307 0.89441 0.86798 0.88922 0.88930 0.88740 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.57 113.37 1.20 1.70 16 2 O -0.37 -8.81 10.47 -57.03 -0.60 -9.41 16 3 C 0.54 14.40 7.95 70.15 0.56 14.96 16 4 O -0.55 -15.54 14.67 19.68 0.29 -15.25 16 5 C -0.27 -6.79 6.33 -18.82 -0.12 -6.91 16 6 C -0.13 -3.28 10.89 23.62 0.26 -3.02 16 7 C 0.00 -0.09 6.21 40.97 0.25 0.16 16 8 C 0.21 5.50 4.99 85.63 0.43 5.92 16 9 N -0.75 -22.83 5.69 -342.71 -1.95 -24.78 16 10 C 0.12 4.64 6.67 38.67 0.26 4.89 16 11 C -0.16 -6.92 9.82 22.15 0.22 -6.70 16 12 C -0.20 -9.61 9.74 22.48 0.22 -9.39 16 13 C 0.03 1.90 5.57 -21.27 -0.12 1.78 16 14 C -0.50 -28.06 9.03 23.38 0.21 -27.85 16 15 H 0.07 3.60 7.91 -2.91 -0.02 3.58 16 16 C 0.03 1.66 5.13 85.22 0.44 2.10 16 17 N -0.84 -45.42 10.96 21.82 0.24 -45.18 16 18 Si 0.98 39.77 29.60 68.60 2.03 41.80 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 20 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 C -0.14 -7.49 8.64 22.47 0.19 -7.30 16 23 C -0.17 -7.59 9.23 22.15 0.20 -7.38 16 24 N -0.42 -8.22 3.08 -517.74 -1.60 -9.82 16 25 C 0.06 0.72 10.39 127.77 1.33 2.04 16 26 C 0.13 2.72 6.93 42.04 0.29 3.01 16 27 C -0.09 -1.38 9.28 71.24 0.66 -0.72 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 32 H 0.07 1.90 7.92 -2.39 -0.02 1.88 16 33 H 0.06 1.59 6.87 -2.39 -0.02 1.57 16 34 H 0.39 11.13 8.46 -92.70 -0.78 10.34 16 35 H 0.11 4.13 8.06 -2.91 -0.02 4.11 16 36 H 0.09 4.44 8.06 -2.91 -0.02 4.41 16 37 H 0.28 13.88 8.30 -92.71 -0.77 13.11 16 38 H 0.10 5.49 6.16 -2.91 -0.02 5.48 16 39 H 0.11 4.27 6.68 -2.90 -0.02 4.25 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 41 H 0.11 0.82 7.51 -2.38 -0.02 0.80 16 42 H 0.09 1.24 6.98 -2.38 -0.02 1.23 16 43 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.09 0.91 7.60 -2.39 -0.02 0.89 16 45 H 0.09 1.59 6.51 -2.39 -0.02 1.57 16 Total: -1.00 -67.52 378.91 5.13 -62.40 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: 0.24 Total: 32.95 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 6.48 Total: -32.71 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -3.31 Total: -79.77 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.31 Total: -24.66 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -67.52 5.13 -62.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284091266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.755 kcal (2) G-P(sol) polarization free energy of solvation -67.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds