Wall clock time and date at job start Tue Mar 31 2020 15:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30180 * 126.79968 * 2 1 4 4 O 1.20928 * 111.59864 * 180.25124 * 3 2 1 5 5 C 1.34041 * 111.56825 * 359.74334 * 4 3 2 6 6 C 1.50703 * 126.77424 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44566 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.00252 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47066 * 94.64095 * 8 7 5 10 10 C 1.53004 * 109.46523 * 214.63674 * 8 7 5 11 11 N 1.46501 * 109.47316 * 334.63498 * 8 7 5 12 12 C 1.34780 * 119.99960 * 180.02562 * 11 8 7 13 13 O 1.21548 * 120.00034 * 0.02562 * 12 11 8 14 14 C 1.47882 * 119.99803 * 180.02562 * 12 11 8 15 15 C 1.39922 * 120.02478 * 359.71969 * 14 12 11 16 16 C 1.38328 * 120.35701 * 179.74729 * 15 14 12 17 17 C 1.37756 * 120.41096 * 0.55141 * 16 15 14 18 18 C 1.40751 * 120.04195 * 359.70965 * 17 16 15 19 19 C 1.41428 * 120.17868 * 180.02562 * 18 17 16 20 20 H 1.08009 * 119.99964 * 149.74807 * 19 18 17 21 21 C 1.39937 * 120.00110 * 329.74053 * 19 18 17 22 22 N 1.30829 * 119.99565 * 163.05787 * 21 19 18 23 23 Si 1.86793 * 119.99923 * 343.05845 * 21 19 18 24 24 H 1.48510 * 109.46783 * 87.71160 * 23 21 19 25 25 H 1.48496 * 109.47171 * 207.70698 * 23 21 19 26 26 H 1.48494 * 109.47216 * 327.70989 * 23 21 19 27 27 C 1.38996 * 120.02649 * 180.02562 * 14 12 11 28 28 H 1.08998 * 109.47325 * 263.38401 * 1 2 3 29 29 H 1.09003 * 109.46708 * 23.38306 * 1 2 3 30 30 H 1.09004 * 109.47051 * 143.37532 * 1 2 3 31 31 H 1.08995 * 109.46778 * 267.48247 * 6 5 4 32 32 H 1.08997 * 109.47138 * 27.48449 * 6 5 4 33 33 H 1.08995 * 109.46577 * 147.48663 * 6 5 4 34 34 H 1.09001 * 109.46790 * 293.09412 * 9 8 7 35 35 H 1.09003 * 109.46918 * 173.10074 * 9 8 7 36 36 H 1.08998 * 109.47452 * 53.10391 * 9 8 7 37 37 H 1.08994 * 109.47172 * 282.06582 * 10 8 7 38 38 H 1.09000 * 109.47537 * 42.07611 * 10 8 7 39 39 H 1.09008 * 109.46616 * 162.07037 * 10 8 7 40 40 H 0.96998 * 119.99657 * 0.02562 * 11 8 7 41 41 H 1.08002 * 119.81971 * 0.02562 * 15 14 12 42 42 H 1.07994 * 119.79604 * 180.28193 * 16 15 14 43 43 H 1.07999 * 119.97968 * 179.72326 * 17 16 15 44 44 H 0.97007 * 119.99371 * 180.02562 * 22 21 19 45 45 H 1.08005 * 120.19472 * 359.94870 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6025 -0.6068 -0.0034 6 6 4.9022 -1.3696 -0.0087 7 6 2.3539 -1.1320 0.0028 8 6 1.9591 -2.5864 0.0063 9 6 1.7192 -3.0462 1.4457 10 6 0.6764 -2.7684 -0.8077 11 7 3.0330 -3.3854 -0.5891 12 6 2.8998 -4.7226 -0.6928 13 8 1.8886 -5.2655 -0.2928 14 6 3.9841 -5.5292 -1.2934 15 6 5.1459 -4.9041 -1.7594 16 6 6.1666 -5.6525 -2.3176 17 6 6.0466 -7.0201 -2.4315 18 6 4.8830 -7.6659 -1.9733 19 6 4.7570 -9.0699 -2.0883 20 1 4.1746 -9.6209 -1.3646 21 6 5.3868 -9.7451 -3.1398 22 7 5.5574 -11.0407 -3.0762 23 14 5.9837 -8.7967 -4.6343 24 1 7.3632 -8.3041 -4.3893 25 1 5.9804 -9.6894 -5.8209 26 1 5.0824 -7.6425 -4.8805 27 6 3.8472 -6.9082 -1.4011 28 1 -0.3634 -0.1184 1.0208 29 1 -0.3633 0.9433 -0.4079 30 1 -0.3633 -0.8248 -0.6131 31 1 5.1874 -1.5942 -1.0364 32 1 5.6794 -0.7664 0.4605 33 1 4.7797 -2.2998 0.5459 34 1 2.6616 -3.0323 1.9933 35 1 1.3165 -4.0591 1.4412 36 1 1.0087 -2.3749 1.9280 37 1 -0.1796 -2.4502 -0.2129 38 1 0.7330 -2.1663 -1.7145 39 1 0.5623 -3.8189 -1.0757 40 1 3.8398 -2.9521 -0.9087 41 1 5.2482 -3.8320 -1.6788 42 1 7.0613 -5.1611 -2.6703 43 1 6.8459 -7.5971 -2.8726 44 1 5.9943 -11.5087 -3.8049 45 1 2.9503 -7.3944 -1.0464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286522267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:11 Heat of formation + Delta-G solvation = 29.441121 kcal Electronic energy + Delta-G solvation = -28144.765611 eV Core-core repulsion = 24322.781981 eV Total energy + Delta-G solvation = -3821.983630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.02612 -41.43455 -39.37383 -37.94105 -35.63743 -35.38917 -33.87274 -33.30129 -32.01208 -31.39493 -29.90776 -28.60511 -28.09656 -27.10446 -25.38441 -24.30200 -22.52349 -21.96668 -21.39552 -20.73456 -19.72275 -18.72690 -18.26538 -17.78221 -17.25256 -16.93161 -16.45992 -16.02698 -15.63410 -15.48730 -15.23268 -15.09615 -14.64296 -14.57032 -14.45132 -14.30487 -14.21803 -13.99118 -13.79768 -13.55292 -13.41052 -13.35834 -13.13617 -12.84449 -12.70614 -12.55051 -12.41707 -12.37327 -12.25068 -11.93393 -11.72710 -11.52982 -11.07421 -10.93311 -10.63441 -10.41839 -10.00197 -9.60530 -9.55323 -8.89626 -6.54238 0.19773 0.39049 0.76350 1.09429 1.26589 1.42641 1.48569 1.97295 1.99122 2.13394 2.16617 2.67773 3.09075 3.44243 3.47355 3.60830 3.80656 3.87383 4.04838 4.19656 4.27669 4.31193 4.38001 4.52898 4.57392 4.59571 4.60308 4.64730 4.70196 4.74057 4.79727 4.84530 4.86709 4.90424 4.94558 5.08326 5.10466 5.18267 5.27695 5.34085 5.45503 5.50735 5.66303 5.73836 5.87113 6.12564 6.32396 6.55880 6.67769 6.76170 7.22161 7.24660 8.19522 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022890 B = 0.003026 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.934992 B = 9249.907811 C = 9882.142838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.037 3.963 3 N -0.391 5.391 4 O 0.090 5.910 5 C -0.013 4.013 6 C -0.100 4.100 7 C -0.217 4.217 8 C 0.260 3.740 9 C -0.155 4.155 10 C -0.166 4.166 11 N -0.714 5.714 12 C 0.568 3.432 13 O -0.564 6.564 14 C -0.113 4.113 15 C -0.185 4.185 16 C -0.080 4.080 17 C -0.232 4.232 18 C 0.067 3.933 19 C -0.488 4.488 20 H 0.049 0.951 21 C 0.044 3.956 22 N -0.852 5.852 23 Si 0.970 3.030 24 H -0.242 1.242 25 H -0.280 1.280 26 H -0.255 1.255 27 C -0.163 4.163 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.410 0.590 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.109 0.891 44 H 0.294 0.706 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 22.427 3.208 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 N -0.100 5.100 4 O 0.029 5.971 5 C -0.077 4.077 6 C -0.157 4.157 7 C -0.222 4.222 8 C 0.174 3.826 9 C -0.213 4.213 10 C -0.223 4.223 11 N -0.371 5.371 12 C 0.357 3.643 13 O -0.444 6.444 14 C -0.116 4.116 15 C -0.205 4.205 16 C -0.097 4.097 17 C -0.252 4.252 18 C 0.064 3.936 19 C -0.518 4.518 20 H 0.068 0.932 21 C -0.170 4.170 22 N -0.478 5.478 23 Si 0.792 3.208 24 H -0.167 1.167 25 H -0.206 1.206 26 H -0.179 1.179 27 C -0.183 4.183 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.251 0.749 41 H 0.164 0.836 42 H 0.166 0.834 43 H 0.127 0.873 44 H 0.105 0.895 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.693 23.113 3.438 23.522 hybrid contribution 0.224 -1.284 -0.477 1.388 sum -2.469 21.829 2.960 22.167 Atomic orbital electron populations 1.20683 0.84318 1.05109 1.04975 1.23694 1.00069 0.87435 1.01044 1.73860 0.89644 1.24513 1.21936 1.84780 1.21452 1.22819 1.68096 1.24721 0.98859 0.83484 1.00586 1.20882 0.89683 0.99164 1.05921 1.20872 0.92720 0.96046 1.12532 1.18288 0.87404 0.82793 0.94101 1.22187 1.02638 1.02616 0.93846 1.22422 0.96625 1.03021 1.00261 1.46303 1.21788 1.05851 1.63136 1.18463 0.86188 0.82202 0.77419 1.90658 1.31278 1.72577 1.49916 1.19717 0.95680 0.93286 1.02922 1.20999 0.93674 0.99642 1.06137 1.21042 0.98970 0.92667 0.97057 1.21547 0.97766 0.96283 1.09574 1.17776 0.91398 0.92827 0.91576 1.19470 1.29067 0.91748 1.11523 0.93231 1.26903 0.92125 0.95705 1.02282 1.69724 1.33473 1.10914 1.33724 0.85499 0.80682 0.78623 0.75985 1.16666 1.20649 1.17914 1.21202 0.98046 0.92918 1.06140 0.88587 0.89961 0.87994 0.86886 0.86653 0.88390 0.92308 0.91806 0.90089 0.88844 0.91858 0.92226 0.74854 0.83610 0.83406 0.87323 0.89510 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.74 71.24 0.69 -0.64 16 2 C 0.04 0.75 7.20 43.58 0.31 1.06 16 3 N -0.39 -9.03 12.07 -49.55 -0.60 -9.63 16 4 O 0.09 1.90 11.20 71.62 0.80 2.70 16 5 C -0.01 -0.23 7.37 25.04 0.18 -0.04 16 6 C -0.10 -1.11 8.51 71.24 0.61 -0.50 16 7 C -0.22 -4.36 4.92 -19.74 -0.10 -4.46 16 8 C 0.26 5.84 1.00 2.86 0.00 5.84 16 9 C -0.15 -3.54 8.20 71.98 0.59 -2.95 16 10 C -0.17 -3.73 7.04 71.98 0.51 -3.23 16 11 N -0.71 -17.78 4.25 -429.12 -1.82 -19.60 16 12 C 0.57 19.59 7.09 86.80 0.62 20.20 16 13 O -0.56 -22.83 12.65 -3.87 -0.05 -22.87 16 14 C -0.11 -4.33 5.87 -20.13 -0.12 -4.44 16 15 C -0.19 -5.74 9.55 22.70 0.22 -5.52 16 16 C -0.08 -2.66 10.01 22.18 0.22 -2.44 16 17 C -0.23 -9.95 7.30 22.77 0.17 -9.78 16 18 C 0.07 3.32 5.10 -21.32 -0.11 3.22 16 19 C -0.49 -27.51 9.57 23.47 0.22 -27.29 16 20 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 21 C 0.04 2.32 5.42 85.25 0.46 2.79 16 22 N -0.85 -46.61 13.93 21.82 0.30 -46.30 16 23 Si 0.97 40.92 24.60 68.60 1.69 42.61 16 24 H -0.24 -9.18 6.34 99.48 0.63 -8.55 16 25 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.26 -10.95 7.09 99.48 0.71 -10.24 16 27 C -0.16 -7.70 9.34 23.01 0.21 -7.49 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.30 4.71 -2.38 -0.01 1.29 16 31 H 0.11 0.87 7.32 -2.39 -0.02 0.85 16 32 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 1.22 6.91 -2.39 -0.02 1.21 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.81 6.38 -2.39 -0.02 1.79 16 36 H 0.08 1.50 8.13 -2.39 -0.02 1.48 16 37 H 0.09 1.64 6.14 -2.39 -0.01 1.63 16 38 H 0.06 1.32 7.67 -2.39 -0.02 1.30 16 39 H 0.06 1.74 5.88 -2.38 -0.01 1.73 16 40 H 0.41 8.09 2.91 -92.71 -0.27 7.82 16 41 H 0.15 2.98 6.12 -2.91 -0.02 2.97 16 42 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 43 H 0.11 4.61 4.46 -2.91 -0.01 4.60 16 44 H 0.29 14.38 8.30 -92.70 -0.77 13.61 16 45 H 0.09 4.65 7.64 -2.91 -0.02 4.62 16 Total: -1.00 -68.03 353.70 5.72 -62.31 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.70 Total: 26.47 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 4.69 Total: -35.68 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -2.12 Total: -75.54 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.75 Total: -20.18 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.69 Total: 42.61 kcal Total: -68.03 5.72 -62.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286522267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.749 kcal (2) G-P(sol) polarization free energy of solvation -68.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds