Wall clock time and date at job start Tue Mar 31 2020 15:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39920 * 125.87632 * 2 1 4 4 C 1.35323 * 107.93207 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.14424 * 179.97438 * 4 3 2 6 6 N 1.35218 * 107.71191 * 0.02562 * 4 3 2 7 7 C 1.40189 * 126.05654 * 179.97438 * 6 4 3 8 8 C 1.38833 * 120.06941 * 144.99481 * 7 6 4 9 9 C 1.38114 * 119.93514 * 180.02562 * 8 7 6 10 10 C 1.38274 * 120.06716 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.93531 * 180.02562 * 10 9 8 12 12 O 1.45199 * 109.46928 * 90.00142 * 11 10 9 13 13 C 1.34230 * 116.99614 * 179.97438 * 12 11 10 14 14 O 1.20824 * 120.00179 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99717 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.47116 * 180.02562 * 15 13 12 17 17 C 1.50693 * 109.47172 * 180.02562 * 16 15 13 18 18 H 1.08006 * 120.00258 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00172 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99838 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00094 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47167 * 60.00066 * 21 19 17 23 23 H 1.48503 * 109.46708 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46854 * 299.99852 * 21 19 17 25 25 C 1.38276 * 120.13349 * 0.27635 * 10 9 8 26 26 C 1.38127 * 120.06635 * 359.45352 * 25 10 9 27 27 N 1.30876 * 125.88252 * 180.34408 * 2 1 3 28 28 H 1.09000 * 109.46635 * 90.00307 * 1 2 3 29 29 H 1.09001 * 109.47024 * 210.00551 * 1 2 3 30 30 H 1.08998 * 109.46912 * 330.00314 * 1 2 3 31 31 H 1.07997 * 126.03590 * 0.02562 * 3 2 1 32 32 H 1.08991 * 109.47141 * 270.02826 * 5 4 3 33 33 H 1.08999 * 109.47096 * 30.03173 * 5 4 3 34 34 H 1.09004 * 109.46567 * 150.02729 * 5 4 3 35 35 H 1.08010 * 120.03266 * 0.04663 * 8 7 6 36 36 H 1.08004 * 119.97013 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.47152 * 330.00174 * 11 10 9 38 38 H 1.09001 * 109.46980 * 210.00275 * 11 10 9 39 39 H 1.09000 * 109.47303 * 300.00327 * 15 13 12 40 40 H 1.09003 * 109.46535 * 60.00663 * 15 13 12 41 41 H 1.09000 * 109.47151 * 300.00236 * 16 15 13 42 42 H 1.09003 * 109.46860 * 60.00013 * 16 15 13 43 43 H 0.96999 * 120.00252 * 179.97438 * 20 19 17 44 44 H 1.08002 * 119.97113 * 179.70416 * 25 10 9 45 45 H 1.07995 * 120.03610 * 180.27200 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1338 0.0000 4 6 3.6144 0.7168 -0.0006 5 6 4.8350 1.6008 -0.0013 6 7 3.6089 -0.6353 -0.0015 7 6 4.7389 -1.4651 -0.0028 8 6 4.7176 -2.6705 0.6856 9 6 5.8326 -3.4855 0.6829 10 6 6.9692 -3.1023 -0.0051 11 6 8.1840 -3.9942 -0.0065 12 8 8.1085 -4.9128 -1.1285 13 6 9.1217 -5.7812 -1.2741 14 8 10.0408 -5.7743 -0.4898 15 6 9.1121 -6.7656 -2.4152 16 6 10.3710 -7.6328 -2.3512 17 6 10.3618 -8.6167 -3.4926 18 1 9.5404 -8.6227 -4.1938 19 6 11.4025 -9.5087 -3.6423 20 7 12.4034 -9.5005 -2.7893 21 14 11.3913 -10.7278 -5.0576 22 1 11.3629 -9.9902 -6.3461 23 1 12.6132 -11.5696 -4.9953 24 1 10.1889 -11.5933 -4.9559 25 6 6.9953 -1.8999 -0.6874 26 6 5.8814 -1.0831 -0.6930 27 7 2.2741 -1.0604 -0.0064 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9917 2.1604 0.0004 32 1 5.1284 1.8141 -1.0291 33 1 4.6077 2.5345 0.5130 34 1 5.6516 1.0928 0.5118 35 1 3.8298 -2.9708 1.2225 36 1 5.8168 -4.4232 1.2186 37 1 8.2205 -4.5599 0.9245 38 1 9.0827 -3.3839 -0.0963 39 1 8.2295 -7.4008 -2.3398 40 1 9.0908 -6.2247 -3.3613 41 1 11.2538 -6.9979 -2.4264 42 1 10.3919 -8.1736 -1.4050 43 1 13.1354 -10.1282 -2.8944 44 1 7.8861 -1.6009 -1.2198 45 1 5.9008 -0.1461 -1.2297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291033397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:54 Heat of formation + Delta-G solvation = 1.839473 kcal Electronic energy + Delta-G solvation = -25751.783790 eV Core-core repulsion = 21928.603263 eV Total energy + Delta-G solvation = -3823.180527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.98896 -40.17107 -39.32921 -36.28383 -34.65582 -33.59648 -32.87543 -31.58386 -31.24026 -30.97290 -28.72874 -27.50717 -26.42923 -25.30162 -23.34449 -22.47015 -21.76553 -20.58515 -19.95364 -19.83398 -17.91093 -17.37165 -16.65851 -16.51807 -16.03983 -15.90650 -15.21507 -15.05729 -14.77183 -14.47708 -14.18027 -14.08433 -13.93576 -13.71935 -13.48630 -13.46150 -13.24998 -12.90176 -12.79629 -12.52789 -12.27416 -12.23030 -12.19736 -11.74007 -11.49690 -11.20001 -10.95014 -10.90761 -10.67321 -10.44579 -10.18992 -10.05521 -9.93424 -9.57889 -9.38498 -9.22711 -9.19094 -8.44659 -8.38345 -6.02322 -4.07322 0.44215 0.96099 1.63202 2.01963 2.34772 2.78819 2.95897 3.32528 3.37074 3.38969 3.55633 4.11693 4.16595 4.41271 4.42501 4.48271 4.52487 4.57841 4.86792 4.93314 4.94989 4.98581 5.13058 5.20597 5.22400 5.28092 5.30019 5.33039 5.37646 5.38611 5.53128 5.62370 5.63381 5.72393 5.82428 5.94461 6.10509 6.18338 6.20188 6.28804 6.35968 6.60998 6.85050 6.90004 7.33601 7.64929 7.71807 7.96783 8.23110 8.38659 8.99483 9.56761 11.08590 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024902 B = 0.001743 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.151403 B =16056.316210 C =16561.754196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.078 3.922 3 C -0.267 4.267 4 C 0.088 3.912 5 C -0.099 4.099 6 N -0.323 5.323 7 C 0.156 3.844 8 C -0.112 4.112 9 C -0.075 4.075 10 C -0.089 4.089 11 C 0.103 3.897 12 O -0.361 6.361 13 C 0.457 3.543 14 O -0.505 6.505 15 C -0.103 4.103 16 C 0.033 3.967 17 C -0.530 4.530 18 H 0.058 0.942 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.074 4.074 26 C -0.134 4.134 27 N -0.289 5.289 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.151 0.849 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.262 0.738 44 H 0.137 0.863 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.339 24.943 7.759 33.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.295 4.295 4 C -0.036 4.036 5 C -0.157 4.157 6 N -0.099 5.099 7 C 0.065 3.935 8 C -0.132 4.132 9 C -0.094 4.094 10 C -0.089 4.089 11 C 0.029 3.971 12 O -0.279 6.279 13 C 0.301 3.699 14 O -0.391 6.391 15 C -0.141 4.141 16 C -0.004 4.004 17 C -0.568 4.568 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.724 3.276 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.093 4.093 26 C -0.155 4.155 27 N -0.109 5.109 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.169 0.831 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.155 0.845 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.788 23.569 8.070 31.815 hybrid contribution 0.079 0.245 -0.635 0.685 sum -19.710 23.814 7.434 31.794 Atomic orbital electron populations 1.20208 0.86250 1.03480 1.03205 1.22492 0.97181 0.90701 0.98467 1.21179 0.90721 0.99972 1.17648 1.21244 0.97697 0.83882 1.00749 1.20654 0.93222 0.98221 1.03598 1.45734 1.04219 1.03520 1.56422 1.17488 0.84549 0.92156 0.99338 1.20955 0.99407 0.93378 0.99423 1.21037 0.91299 0.99089 0.97953 1.19705 0.95382 0.95006 0.98832 1.21681 0.95492 0.90397 0.89513 1.86651 1.47958 1.45228 1.48075 1.24822 0.78712 0.79534 0.86879 1.90639 1.35503 1.69020 1.43980 1.21785 1.04705 0.94668 0.92921 1.19020 0.89893 0.93524 0.97964 1.21119 1.06527 1.17437 1.11701 0.92349 1.25016 0.95420 0.97480 0.96368 1.69978 1.09616 1.37024 1.36154 0.86598 0.77403 0.81061 0.82565 1.20168 1.21246 1.20165 1.20959 0.98043 0.93192 0.97065 1.21039 0.92495 1.01706 1.00219 1.77506 0.85334 1.22450 1.25581 0.90287 0.90734 0.90238 0.83098 0.89767 0.89378 0.90416 0.84699 0.84559 0.90291 0.90286 0.88908 0.88923 0.95576 0.95570 0.92787 0.84477 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.45 36.01 0.38 -0.06 16 2 C 0.08 0.77 7.22 -82.37 -0.59 0.17 16 3 C -0.27 -2.29 10.65 -39.99 -0.43 -2.72 16 4 C 0.09 0.80 6.76 -82.14 -0.56 0.25 16 5 C -0.10 -0.53 8.60 36.01 0.31 -0.23 16 6 N -0.32 -3.67 3.73 -6.98 -0.03 -3.70 16 7 C 0.16 1.71 6.28 -83.59 -0.52 1.19 16 8 C -0.11 -1.21 9.77 -39.41 -0.38 -1.60 16 9 C -0.08 -0.79 9.69 -39.61 -0.38 -1.17 16 10 C -0.09 -0.98 5.52 -104.59 -0.58 -1.56 16 11 C 0.10 1.33 5.59 36.01 0.20 1.53 16 12 O -0.36 -5.86 10.20 -39.26 -0.40 -6.26 16 13 C 0.46 8.86 7.96 36.01 0.29 9.15 16 14 O -0.50 -11.26 15.73 -18.75 -0.29 -11.55 16 15 C -0.10 -2.10 5.75 -27.88 -0.16 -2.26 16 16 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 17 C -0.53 -14.79 9.11 -34.44 -0.31 -15.11 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 21 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 C -0.07 -0.71 9.69 -39.61 -0.38 -1.10 16 26 C -0.13 -1.25 8.28 -39.40 -0.33 -1.58 16 27 N -0.29 -3.57 12.34 33.69 0.42 -3.16 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.08 0.35 7.74 -51.93 -0.40 -0.05 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.43 6.89 -51.93 -0.36 0.07 16 35 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 37 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 38 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 39 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 41 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.13 0.97 6.09 -52.49 -0.32 0.65 16 LS Contribution 387.39 15.07 5.84 5.84 Total: -1.00 -34.84 387.39 -8.96 -43.80 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -6.53 Total: -2.46 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -3.67 Total: -12.74 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 1.13 Total: -33.04 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.70 Total: -17.81 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.84 -8.96 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291033397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.636 kcal (2) G-P(sol) polarization free energy of solvation -34.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds