Wall clock time and date at job start Tue Mar 31 2020 15:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39920 * 125.87632 * 2 1 4 4 C 1.35323 * 107.93207 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.14424 * 179.97438 * 4 3 2 6 6 N 1.35218 * 107.71191 * 0.02562 * 4 3 2 7 7 C 1.40189 * 126.05654 * 179.97438 * 6 4 3 8 8 C 1.38833 * 120.06941 * 144.99481 * 7 6 4 9 9 C 1.38114 * 119.93514 * 180.02562 * 8 7 6 10 10 C 1.38274 * 120.06716 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.93531 * 180.02562 * 10 9 8 12 12 O 1.45199 * 109.46928 * 90.00142 * 11 10 9 13 13 C 1.34230 * 116.99614 * 179.97438 * 12 11 10 14 14 O 1.20824 * 120.00179 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99717 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.47116 * 180.02562 * 15 13 12 17 17 C 1.50693 * 109.47172 * 180.02562 * 16 15 13 18 18 H 1.08006 * 120.00258 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00172 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99838 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00094 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47167 * 60.00066 * 21 19 17 23 23 H 1.48503 * 109.46708 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46854 * 299.99852 * 21 19 17 25 25 C 1.38276 * 120.13349 * 0.27635 * 10 9 8 26 26 C 1.38127 * 120.06635 * 359.45352 * 25 10 9 27 27 N 1.30876 * 125.88252 * 180.34408 * 2 1 3 28 28 H 1.09000 * 109.46635 * 90.00307 * 1 2 3 29 29 H 1.09001 * 109.47024 * 210.00551 * 1 2 3 30 30 H 1.08998 * 109.46912 * 330.00314 * 1 2 3 31 31 H 1.07997 * 126.03590 * 0.02562 * 3 2 1 32 32 H 1.08991 * 109.47141 * 270.02826 * 5 4 3 33 33 H 1.08999 * 109.47096 * 30.03173 * 5 4 3 34 34 H 1.09004 * 109.46567 * 150.02729 * 5 4 3 35 35 H 1.08010 * 120.03266 * 0.04663 * 8 7 6 36 36 H 1.08004 * 119.97013 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.47152 * 330.00174 * 11 10 9 38 38 H 1.09001 * 109.46980 * 210.00275 * 11 10 9 39 39 H 1.09000 * 109.47303 * 300.00327 * 15 13 12 40 40 H 1.09003 * 109.46535 * 60.00663 * 15 13 12 41 41 H 1.09000 * 109.47151 * 300.00236 * 16 15 13 42 42 H 1.09003 * 109.46860 * 60.00013 * 16 15 13 43 43 H 0.96999 * 120.00252 * 179.97438 * 20 19 17 44 44 H 1.08002 * 119.97113 * 179.70416 * 25 10 9 45 45 H 1.07995 * 120.03610 * 180.27200 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1338 0.0000 4 6 3.6144 0.7168 -0.0006 5 6 4.8350 1.6008 -0.0013 6 7 3.6089 -0.6353 -0.0015 7 6 4.7389 -1.4651 -0.0028 8 6 4.7176 -2.6705 0.6856 9 6 5.8326 -3.4855 0.6829 10 6 6.9692 -3.1023 -0.0051 11 6 8.1840 -3.9942 -0.0065 12 8 8.1085 -4.9128 -1.1285 13 6 9.1217 -5.7812 -1.2741 14 8 10.0408 -5.7743 -0.4898 15 6 9.1121 -6.7656 -2.4152 16 6 10.3710 -7.6328 -2.3512 17 6 10.3618 -8.6167 -3.4926 18 1 9.5404 -8.6227 -4.1938 19 6 11.4025 -9.5087 -3.6423 20 7 12.4034 -9.5005 -2.7893 21 14 11.3913 -10.7278 -5.0576 22 1 11.3629 -9.9902 -6.3461 23 1 12.6132 -11.5696 -4.9953 24 1 10.1889 -11.5933 -4.9559 25 6 6.9953 -1.8999 -0.6874 26 6 5.8814 -1.0831 -0.6930 27 7 2.2741 -1.0604 -0.0064 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9917 2.1604 0.0004 32 1 5.1284 1.8141 -1.0291 33 1 4.6077 2.5345 0.5130 34 1 5.6516 1.0928 0.5118 35 1 3.8298 -2.9708 1.2225 36 1 5.8168 -4.4232 1.2186 37 1 8.2205 -4.5599 0.9245 38 1 9.0827 -3.3839 -0.0963 39 1 8.2295 -7.4008 -2.3398 40 1 9.0908 -6.2247 -3.3613 41 1 11.2538 -6.9979 -2.4264 42 1 10.3919 -8.1736 -1.4050 43 1 13.1354 -10.1282 -2.8944 44 1 7.8861 -1.6009 -1.2198 45 1 5.9008 -0.1461 -1.2297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291033397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:53 Heat of formation + Delta-G solvation = -16.480515 kcal Electronic energy + Delta-G solvation = -25752.578205 eV Core-core repulsion = 21928.603263 eV Total energy + Delta-G solvation = -3823.974942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.67971 -41.54704 -40.25064 -37.68887 -35.64321 -35.42917 -33.54597 -33.14895 -32.23417 -31.86973 -29.51378 -28.09793 -28.04635 -26.49582 -24.17534 -24.06350 -22.78574 -21.47789 -21.27071 -20.63009 -19.08942 -18.61843 -18.16917 -17.72332 -17.53405 -16.83309 -16.48422 -16.14696 -16.06703 -15.59779 -15.09571 -14.81810 -14.74836 -14.58578 -14.33043 -14.22928 -14.16785 -14.04865 -13.81835 -13.66967 -13.34838 -13.24666 -13.16521 -12.84993 -12.79790 -12.60927 -12.49969 -12.27060 -11.99381 -11.75554 -11.70475 -11.57859 -11.45305 -11.30003 -10.85434 -10.56507 -10.15493 -9.91660 -9.20752 -8.19574 -6.33265 -0.36284 0.19026 0.90036 1.23801 1.32710 1.43521 1.47401 1.55048 1.70355 1.78331 2.42863 2.62093 3.14104 3.45448 3.52587 3.60225 3.69984 3.77837 3.95421 4.00154 4.13044 4.18182 4.36078 4.39170 4.45452 4.47933 4.48119 4.51603 4.63232 4.70075 4.76590 4.81651 4.87533 4.92158 4.97830 4.99584 5.08141 5.11192 5.28101 5.35913 5.38530 5.47595 5.55924 5.56132 5.71603 5.80970 6.13753 6.15493 6.63805 6.78841 6.86592 7.36848 8.92645 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024902 B = 0.001743 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.151403 B =16056.316210 C =16561.754196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.071 3.929 3 C -0.275 4.275 4 C 0.081 3.919 5 C -0.098 4.098 6 N -0.339 5.339 7 C 0.147 3.853 8 C -0.125 4.125 9 C -0.075 4.075 10 C -0.102 4.102 11 C 0.101 3.899 12 O -0.354 6.354 13 C 0.468 3.532 14 O -0.541 6.541 15 C -0.096 4.096 16 C 0.038 3.962 17 C -0.546 4.546 18 H 0.076 0.924 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.973 3.027 22 H -0.263 1.263 23 H -0.287 1.287 24 H -0.264 1.264 25 C -0.069 4.069 26 C -0.129 4.129 27 N -0.338 5.338 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.178 0.822 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.115 0.885 41 H -0.008 1.008 42 H -0.009 1.009 43 H 0.264 0.736 44 H 0.157 0.843 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.832 26.646 6.319 35.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.095 4.095 3 C -0.303 4.303 4 C -0.043 4.043 5 C -0.156 4.156 6 N -0.116 5.116 7 C 0.056 3.944 8 C -0.144 4.144 9 C -0.094 4.094 10 C -0.103 4.103 11 C 0.027 3.973 12 O -0.271 6.271 13 C 0.313 3.687 14 O -0.431 6.431 15 C -0.133 4.133 16 C 0.001 3.999 17 C -0.584 4.584 18 H 0.094 0.906 19 C -0.201 4.201 20 N -0.574 5.574 21 Si 0.797 3.203 22 H -0.188 1.188 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.087 4.087 26 C -0.149 4.149 27 N -0.159 5.159 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.196 0.804 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.095 0.905 35 H 0.148 0.852 36 H 0.162 0.838 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.010 0.990 42 H 0.009 0.991 43 H 0.072 0.928 44 H 0.175 0.825 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.328 25.303 6.625 33.749 hybrid contribution 0.440 -0.142 -0.114 0.476 sum -20.888 25.161 6.511 33.344 Atomic orbital electron populations 1.20347 0.84108 1.04461 1.04090 1.23160 0.98686 0.90675 0.96995 1.21598 0.90462 1.00935 1.17260 1.21949 0.99330 0.83384 0.99591 1.20803 0.91626 0.98259 1.04894 1.45874 1.03938 1.04393 1.57361 1.17772 0.85159 0.92243 0.99267 1.20973 0.99396 0.93972 1.00104 1.21129 0.91060 0.99385 0.97830 1.19609 0.94796 0.95496 1.00351 1.21924 0.96945 0.90068 0.88323 1.86604 1.46182 1.44973 1.49334 1.24445 0.78653 0.79613 0.85995 1.90633 1.37063 1.70188 1.45228 1.21526 1.02310 0.94856 0.94589 1.18801 0.91585 0.93520 0.96006 1.21616 1.06999 1.17570 1.12193 0.90578 1.26075 0.94930 0.99749 0.99323 1.70144 1.10560 1.38216 1.38472 0.85381 0.77631 0.78306 0.78979 1.18770 1.21259 1.18879 1.21195 0.98792 0.92465 0.96284 1.21236 0.91606 1.02392 0.99694 1.77447 0.86277 1.24272 1.27893 0.89322 0.91119 0.87877 0.80427 0.88135 0.87336 0.90536 0.85249 0.83753 0.90104 0.89461 0.86846 0.86656 0.98966 0.99096 0.92755 0.82525 0.82565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.45 71.24 0.74 -0.03 16 2 C 0.07 1.34 7.22 43.11 0.31 1.65 16 3 C -0.27 -4.24 10.65 22.00 0.23 -4.00 16 4 C 0.08 1.34 6.76 41.37 0.28 1.62 16 5 C -0.10 -0.80 8.60 71.24 0.61 -0.19 16 6 N -0.34 -7.53 3.73 -176.00 -0.66 -8.19 16 7 C 0.15 3.14 6.28 38.09 0.24 3.38 16 8 C -0.12 -2.72 9.77 22.38 0.22 -2.50 16 9 C -0.08 -1.56 9.69 22.25 0.22 -1.35 16 10 C -0.10 -2.15 5.52 -19.85 -0.11 -2.26 16 11 C 0.10 2.52 5.59 71.24 0.40 2.92 16 12 O -0.35 -11.10 10.20 -51.42 -0.52 -11.63 16 13 C 0.47 18.06 7.96 71.24 0.57 18.63 16 14 O -0.54 -24.68 15.73 21.97 0.35 -24.34 16 15 C -0.10 -3.83 5.75 29.85 0.17 -3.66 16 16 C 0.04 2.06 4.26 29.85 0.13 2.19 16 17 C -0.55 -30.49 9.11 25.60 0.23 -30.26 16 18 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 19 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 20 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 21 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 22 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 25 C -0.07 -1.20 9.69 22.25 0.22 -0.99 16 26 C -0.13 -2.18 8.28 22.39 0.19 -2.00 16 27 N -0.34 -8.42 12.34 -47.33 -0.58 -9.00 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 32 H 0.10 0.52 7.74 -2.39 -0.02 0.50 16 33 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.08 0.67 6.89 -2.38 -0.02 0.65 16 35 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 37 H 0.08 2.00 8.08 -2.39 -0.02 1.98 16 38 H 0.09 2.06 8.07 -2.39 -0.02 2.04 16 39 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 40 H 0.12 4.11 8.14 -2.39 -0.02 4.09 16 41 H -0.01 -0.49 8.10 -2.39 -0.02 -0.50 16 42 H -0.01 -0.57 8.10 -2.39 -0.02 -0.59 16 43 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 44 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 45 H 0.16 1.86 6.09 -2.91 -0.02 1.84 16 Total: -1.00 -77.54 387.39 6.98 -70.56 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.99 Total: 11.03 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 5.11 Total: -16.56 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -0.96 Total: -74.81 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.18 Total: -35.96 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -77.54 6.98 -70.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291033397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.081 kcal (2) G-P(sol) polarization free energy of solvation -77.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds