Wall clock time and date at job start Tue Mar 31 2020 14:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38358 * 119.85245 * 2 1 4 4 C 1.37961 * 120.14654 * 179.97438 * 3 2 1 5 5 C 1.39578 * 119.85318 * 359.97438 * 4 3 2 6 6 C 1.47821 * 120.14615 * 179.97438 * 5 4 3 7 7 N 1.31220 * 125.72727 * 180.31148 * 6 5 4 8 8 C 1.34156 * 108.64855 * 180.14684 * 7 6 5 9 9 C 1.50697 * 126.08144 * 179.82558 * 8 7 6 10 10 C 1.52997 * 109.47466 * 304.69587 * 9 8 7 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 8 12 12 C 1.34771 * 119.99622 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00597 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99622 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.47212 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 12 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99996 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00227 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46873 * 60.00019 * 20 18 16 22 22 H 1.48503 * 109.47134 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46938 * 300.00027 * 20 18 16 24 24 C 1.34547 * 107.83618 * 359.56908 * 8 7 6 25 25 O 1.34427 * 125.72560 * 359.97438 * 6 5 4 26 26 C 1.39577 * 119.70768 * 0.25277 * 5 4 3 27 27 C 1.37957 * 119.85148 * 359.51774 * 26 5 4 28 28 H 1.09002 * 109.46858 * 90.00995 * 1 2 3 29 29 H 1.09004 * 109.47354 * 210.00153 * 1 2 3 30 30 H 1.08997 * 109.47550 * 330.00796 * 1 2 3 31 31 H 1.07999 * 119.92909 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.08080 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.47120 * 184.69340 * 9 8 7 34 34 H 1.08998 * 109.46862 * 64.70142 * 9 8 7 35 35 H 1.09002 * 109.47153 * 59.99773 * 10 9 8 36 36 H 1.09001 * 109.46832 * 299.99964 * 10 9 8 37 37 H 0.96996 * 119.99606 * 0.02562 * 11 10 9 38 38 H 1.09001 * 109.47380 * 300.00190 * 14 12 11 39 39 H 1.09002 * 109.47060 * 60.00278 * 14 12 11 40 40 H 1.09001 * 109.47289 * 299.99918 * 15 14 12 41 41 H 1.09002 * 109.47153 * 60.00002 * 15 14 12 42 42 H 0.96993 * 120.00405 * 179.97438 * 19 18 16 43 43 H 1.08008 * 126.36193 * 180.22253 * 24 8 7 44 44 H 1.07996 * 120.06932 * 179.72075 * 26 5 4 45 45 H 1.08007 * 119.92793 * 180.25301 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2000 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2762 0.0001 0.0016 6 6 5.7544 0.0001 0.0016 7 7 6.5207 -1.0651 -0.0032 8 6 7.8031 -0.6711 0.0018 9 6 9.0091 -1.5746 0.0026 10 6 8.9215 -2.5413 1.1853 11 7 10.0937 -3.4201 1.1856 12 6 10.2320 -4.3585 2.1430 13 8 9.3859 -4.4759 3.0039 14 6 11.4375 -5.2629 2.1430 15 6 11.3500 -6.2294 3.3257 16 6 12.5558 -7.1333 3.3262 17 1 13.3091 -7.0292 2.5592 18 6 12.6969 -8.0941 4.3050 19 7 11.7794 -8.2214 5.2386 20 14 14.1912 -9.2150 4.3050 21 1 15.4242 -8.3962 4.4257 22 1 14.1063 -10.1531 5.4531 23 1 14.2314 -9.9864 3.0368 24 6 7.8208 0.6742 0.0004 25 8 6.5393 1.0914 0.0002 26 6 3.5753 -1.2069 -0.0032 27 6 2.1957 -1.1999 0.0011 28 1 -0.3633 -0.0002 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6521 2.1332 0.0004 32 1 4.1117 2.1444 0.0001 33 1 9.9137 -0.9730 0.0913 34 1 9.0393 -2.1410 -0.9282 35 1 8.0169 -3.1429 1.0966 36 1 8.8914 -1.9748 2.1160 37 1 10.7706 -3.3259 0.4973 38 1 11.4666 -5.8297 1.2124 39 1 12.3426 -4.6618 2.2307 40 1 11.3208 -5.6630 4.2565 41 1 10.4450 -6.8305 3.2376 42 1 11.8784 -8.8974 5.9270 43 1 8.6990 1.3030 0.0000 44 1 4.1118 -2.1442 -0.0069 45 1 1.6521 -2.1332 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291613946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:18 Heat of formation + Delta-G solvation = -11.989267 kcal Electronic energy + Delta-G solvation = -25326.054627 eV Core-core repulsion = 21502.274440 eV Total energy + Delta-G solvation = -3823.780187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.59524 -39.66664 -39.08161 -36.14605 -34.59600 -33.83928 -33.39890 -31.72799 -31.37308 -30.82619 -29.11698 -27.22328 -25.74285 -23.85884 -23.22557 -23.00440 -21.44043 -21.16278 -20.98185 -19.55578 -17.99349 -16.99627 -16.79938 -16.48529 -15.79678 -15.70745 -15.56713 -15.49672 -15.38976 -14.51934 -14.38585 -14.24517 -14.18216 -13.90406 -13.70478 -13.21589 -12.88408 -12.69582 -12.68513 -12.46698 -12.16730 -12.10934 -11.88145 -11.57349 -11.44015 -11.20885 -11.12154 -10.88097 -10.76014 -10.59027 -9.90738 -9.81723 -9.62094 -9.41429 -9.14290 -8.97121 -8.72049 -8.47088 -8.28218 -5.92426 -3.96944 0.26120 0.96061 1.45342 2.32889 2.40352 3.33146 3.36805 3.37450 3.40958 3.42507 3.45706 3.65904 4.33683 4.39605 4.49091 4.50923 4.55682 4.57110 4.81154 4.93211 4.94552 5.04520 5.13441 5.18933 5.27649 5.30033 5.38529 5.42164 5.51322 5.59293 5.62649 5.63324 5.80014 5.91660 6.00251 6.03466 6.10994 6.13557 6.28006 6.29406 6.45898 6.77118 6.94420 7.41113 7.77894 7.91032 7.94834 8.11544 8.42633 8.85138 9.11799 9.66288 11.18507 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019956 B = 0.001682 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.766121 B =16644.844537 C =17783.311598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.067 4.067 3 C -0.124 4.124 4 C -0.085 4.085 5 C -0.025 4.025 6 C 0.234 3.766 7 N -0.461 5.461 8 C 0.000 4.000 9 C -0.048 4.048 10 C 0.127 3.873 11 N -0.746 5.746 12 C 0.509 3.491 13 O -0.534 6.534 14 C -0.129 4.129 15 C 0.036 3.964 16 C -0.528 4.528 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.069 4.069 25 O -0.197 6.197 26 C -0.063 4.063 27 C -0.122 4.122 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.397 0.603 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.219 0.781 44 H 0.141 0.859 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.337 23.941 -16.325 34.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.068 4.068 3 C -0.142 4.142 4 C -0.104 4.104 5 C -0.026 4.026 6 C 0.030 3.970 7 N -0.190 5.190 8 C -0.122 4.122 9 C -0.086 4.086 10 C 0.002 3.998 11 N -0.401 5.401 12 C 0.297 3.703 13 O -0.409 6.409 14 C -0.169 4.169 15 C -0.001 4.001 16 C -0.566 4.566 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.140 4.140 25 O -0.083 6.083 26 C -0.083 4.083 27 C -0.140 4.140 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.230 0.770 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.235 0.765 44 H 0.158 0.842 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.240 23.160 -15.511 33.870 hybrid contribution 1.621 0.229 -0.296 1.663 sum -17.620 23.390 -15.807 33.277 Atomic orbital electron populations 1.20865 0.90743 1.03244 1.02686 1.20168 0.96518 0.93118 0.97004 1.20942 0.93464 0.97972 1.01829 1.21208 0.94439 0.96971 0.97829 1.17264 0.83831 0.94917 1.06600 1.23790 0.93093 0.78740 1.01352 1.70537 1.01511 1.29295 1.17646 1.21539 0.92977 0.92589 1.05078 1.20130 0.92359 0.96002 1.00138 1.21103 0.89821 0.91792 0.97053 1.46187 1.24910 1.37049 1.31913 1.21556 0.88775 0.79961 0.80001 1.90676 1.43644 1.69639 1.36921 1.21860 0.93642 0.97552 1.03889 1.18899 0.97267 0.92658 0.91311 1.21196 1.06631 1.17056 1.11709 0.92653 1.25030 0.96360 0.97452 0.95553 1.69991 1.34004 1.34220 1.14629 0.86647 0.83207 0.80565 0.77463 1.20277 1.21305 1.20263 1.24914 0.84759 0.96026 1.08284 1.84485 1.16919 1.37033 1.69903 1.21236 0.93967 0.97384 0.95669 1.21037 0.93522 0.98094 1.01345 0.90739 0.91094 0.91238 0.85256 0.85163 0.89405 0.89309 0.90939 0.91971 0.76997 0.90239 0.90270 0.95837 0.95806 0.92914 0.76455 0.84154 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 10.00 36.00 0.36 -0.14 16 2 C -0.07 -0.45 5.89 -104.54 -0.62 -1.07 16 3 C -0.12 -0.83 9.68 -39.64 -0.38 -1.21 16 4 C -0.09 -0.69 9.72 -39.18 -0.38 -1.07 16 5 C -0.02 -0.25 5.87 -104.98 -0.62 -0.87 16 6 C 0.23 2.74 7.90 -13.89 -0.11 2.63 16 7 N -0.46 -5.97 10.90 -7.97 -0.09 -6.05 16 8 C 0.00 0.00 6.36 -82.88 -0.53 -0.53 16 9 C -0.05 -0.45 5.89 -27.89 -0.16 -0.62 16 10 C 0.13 1.72 5.65 -4.04 -0.02 1.69 16 11 N -0.75 -10.73 5.56 -60.29 -0.33 -11.06 16 12 C 0.51 10.17 7.83 -10.99 -0.09 10.08 16 13 O -0.53 -13.25 15.98 5.56 0.09 -13.16 16 14 C -0.13 -2.68 5.64 -27.88 -0.16 -2.84 16 15 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 16 C -0.53 -15.20 9.11 -34.44 -0.31 -15.51 16 17 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.84 13.29 55.43 0.74 -27.10 16 20 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C -0.07 -0.61 12.06 29.43 0.35 -0.26 16 25 O -0.20 -2.08 10.52 4.07 0.04 -2.03 16 26 C -0.06 -0.60 9.69 -39.19 -0.38 -0.98 16 27 C -0.12 -0.93 9.68 -39.64 -0.38 -1.31 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 30 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 31 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.13 0.88 7.90 -52.49 -0.41 0.46 16 33 H 0.09 0.59 8.11 -51.93 -0.42 0.16 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.40 4.22 8.47 -40.82 -0.35 3.88 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.22 0.99 8.06 -52.48 -0.42 0.56 16 44 H 0.14 1.39 7.83 -52.49 -0.41 0.98 16 45 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 391.54 15.07 5.90 5.90 Total: -1.00 -37.51 391.54 -8.94 -46.45 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.62 Total: -0.30 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -3.64 Total: -9.52 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.31 Total: -44.22 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.13 Total: -15.19 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.51 -8.94 -46.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291613946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.459 kcal (2) G-P(sol) polarization free energy of solvation -37.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds