Wall clock time and date at job start Tue Mar 31 2020 14:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38358 * 119.85245 * 2 1 4 4 C 1.37961 * 120.14654 * 179.97438 * 3 2 1 5 5 C 1.39578 * 119.85318 * 359.97438 * 4 3 2 6 6 C 1.47821 * 120.14615 * 179.97438 * 5 4 3 7 7 N 1.31220 * 125.72727 * 180.31148 * 6 5 4 8 8 C 1.34156 * 108.64855 * 180.14684 * 7 6 5 9 9 C 1.50697 * 126.08144 * 179.82558 * 8 7 6 10 10 C 1.52997 * 109.47466 * 304.69587 * 9 8 7 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 8 12 12 C 1.34771 * 119.99622 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00597 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99622 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.47212 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 12 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99996 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00227 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46873 * 60.00019 * 20 18 16 22 22 H 1.48503 * 109.47134 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46938 * 300.00027 * 20 18 16 24 24 C 1.34547 * 107.83618 * 359.56908 * 8 7 6 25 25 O 1.34427 * 125.72560 * 359.97438 * 6 5 4 26 26 C 1.39577 * 119.70768 * 0.25277 * 5 4 3 27 27 C 1.37957 * 119.85148 * 359.51774 * 26 5 4 28 28 H 1.09002 * 109.46858 * 90.00995 * 1 2 3 29 29 H 1.09004 * 109.47354 * 210.00153 * 1 2 3 30 30 H 1.08997 * 109.47550 * 330.00796 * 1 2 3 31 31 H 1.07999 * 119.92909 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.08080 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.47120 * 184.69340 * 9 8 7 34 34 H 1.08998 * 109.46862 * 64.70142 * 9 8 7 35 35 H 1.09002 * 109.47153 * 59.99773 * 10 9 8 36 36 H 1.09001 * 109.46832 * 299.99964 * 10 9 8 37 37 H 0.96996 * 119.99606 * 0.02562 * 11 10 9 38 38 H 1.09001 * 109.47380 * 300.00190 * 14 12 11 39 39 H 1.09002 * 109.47060 * 60.00278 * 14 12 11 40 40 H 1.09001 * 109.47289 * 299.99918 * 15 14 12 41 41 H 1.09002 * 109.47153 * 60.00002 * 15 14 12 42 42 H 0.96993 * 120.00405 * 179.97438 * 19 18 16 43 43 H 1.08008 * 126.36193 * 180.22253 * 24 8 7 44 44 H 1.07996 * 120.06932 * 179.72075 * 26 5 4 45 45 H 1.08007 * 119.92793 * 180.25301 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2000 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2762 0.0001 0.0016 6 6 5.7544 0.0001 0.0016 7 7 6.5207 -1.0651 -0.0032 8 6 7.8031 -0.6711 0.0018 9 6 9.0091 -1.5746 0.0026 10 6 8.9215 -2.5413 1.1853 11 7 10.0937 -3.4201 1.1856 12 6 10.2320 -4.3585 2.1430 13 8 9.3859 -4.4759 3.0039 14 6 11.4375 -5.2629 2.1430 15 6 11.3500 -6.2294 3.3257 16 6 12.5558 -7.1333 3.3262 17 1 13.3091 -7.0292 2.5592 18 6 12.6969 -8.0941 4.3050 19 7 11.7794 -8.2214 5.2386 20 14 14.1912 -9.2150 4.3050 21 1 15.4242 -8.3962 4.4257 22 1 14.1063 -10.1531 5.4531 23 1 14.2314 -9.9864 3.0368 24 6 7.8208 0.6742 0.0004 25 8 6.5393 1.0914 0.0002 26 6 3.5753 -1.2069 -0.0032 27 6 2.1957 -1.1999 0.0011 28 1 -0.3633 -0.0002 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6521 2.1332 0.0004 32 1 4.1117 2.1444 0.0001 33 1 9.9137 -0.9730 0.0913 34 1 9.0393 -2.1410 -0.9282 35 1 8.0169 -3.1429 1.0966 36 1 8.8914 -1.9748 2.1160 37 1 10.7706 -3.3259 0.4973 38 1 11.4666 -5.8297 1.2124 39 1 12.3426 -4.6618 2.2307 40 1 11.3208 -5.6630 4.2565 41 1 10.4450 -6.8305 3.2376 42 1 11.8784 -8.8974 5.9270 43 1 8.6990 1.3030 0.0000 44 1 4.1118 -2.1442 -0.0069 45 1 1.6521 -2.1332 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291613946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:18 Heat of formation + Delta-G solvation = -38.853468 kcal Electronic energy + Delta-G solvation = -25327.219546 eV Core-core repulsion = 21502.274440 eV Total energy + Delta-G solvation = -3824.945106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.36662 -40.68106 -40.24114 -37.18191 -35.70126 -35.50354 -34.53466 -33.15538 -32.31191 -31.96488 -30.03764 -28.01289 -27.46217 -25.03068 -23.90146 -23.81714 -23.13272 -22.01298 -21.75341 -21.06699 -18.90165 -18.62304 -17.80705 -17.42182 -17.15357 -16.90723 -16.76550 -16.42126 -16.28009 -16.24051 -15.62742 -15.07072 -14.83146 -14.67054 -14.48105 -14.47773 -14.21146 -14.07946 -13.70774 -13.30474 -13.22679 -13.20963 -13.03474 -12.77851 -12.62112 -12.49644 -12.38641 -12.08263 -12.00550 -11.89846 -11.63327 -11.57665 -11.31941 -10.77814 -10.55660 -10.45920 -10.10012 -10.01691 -9.13844 -8.16974 -6.31601 -0.40672 0.36162 0.75504 1.42671 1.47717 1.55370 1.60742 1.63352 1.71415 2.24203 2.45595 2.75401 2.85657 3.15750 3.66719 3.77612 3.85138 3.94573 3.98200 4.03703 4.13515 4.19012 4.37558 4.39581 4.47433 4.52683 4.57116 4.60075 4.75391 4.77194 4.83697 4.86660 4.92407 4.98792 5.05907 5.10433 5.13579 5.24692 5.37559 5.39222 5.44355 5.51864 5.58040 5.63555 5.86101 5.90445 6.17986 6.62734 6.64841 6.86984 7.36287 7.39050 8.95661 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019956 B = 0.001682 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.766121 B =16644.844537 C =17783.311598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.067 4.067 3 C -0.123 4.123 4 C -0.088 4.088 5 C -0.050 4.050 6 C 0.219 3.781 7 N -0.498 5.498 8 C -0.034 4.034 9 C -0.032 4.032 10 C 0.130 3.870 11 N -0.715 5.715 12 C 0.508 3.492 13 O -0.595 6.595 14 C -0.117 4.117 15 C 0.040 3.960 16 C -0.544 4.544 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.939 5.939 20 Si 0.977 3.023 21 H -0.261 1.261 22 H -0.289 1.289 23 H -0.262 1.262 24 C -0.049 4.049 25 O -0.201 6.201 26 C -0.083 4.083 27 C -0.129 4.129 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.158 0.842 32 H 0.142 0.858 33 H 0.127 0.873 34 H 0.099 0.901 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.421 0.579 38 H 0.106 0.894 39 H 0.109 0.891 40 H -0.019 1.019 41 H -0.021 1.021 42 H 0.262 0.738 43 H 0.265 0.735 44 H 0.123 0.877 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.949 25.785 -18.506 35.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.067 4.067 3 C -0.140 4.140 4 C -0.107 4.107 5 C -0.051 4.051 6 C 0.016 3.984 7 N -0.228 5.228 8 C -0.155 4.155 9 C -0.070 4.070 10 C 0.006 3.994 11 N -0.369 5.369 12 C 0.297 3.703 13 O -0.475 6.475 14 C -0.157 4.157 15 C 0.002 3.998 16 C -0.582 4.582 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.800 3.200 21 H -0.186 1.186 22 H -0.214 1.214 23 H -0.186 1.186 24 C -0.119 4.119 25 O -0.087 6.087 26 C -0.102 4.102 27 C -0.146 4.146 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.176 0.824 32 H 0.160 0.840 33 H 0.145 0.855 34 H 0.117 0.883 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.259 0.741 38 H 0.125 0.875 39 H 0.127 0.873 40 H -0.001 1.001 41 H -0.002 1.002 42 H 0.071 0.929 43 H 0.280 0.720 44 H 0.141 0.859 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.822 25.048 -17.771 35.508 hybrid contribution 1.094 -0.280 0.373 1.189 sum -16.728 24.767 -17.398 34.583 Atomic orbital electron populations 1.20928 0.88643 1.04178 1.03640 1.20530 0.98041 0.92656 0.95516 1.21307 0.92999 0.99185 1.00537 1.21404 0.95209 0.96594 0.97527 1.17480 0.83494 0.95893 1.08264 1.24091 0.93786 0.78815 1.01715 1.70502 1.02965 1.30535 1.18751 1.21869 0.92650 0.93921 1.07027 1.20087 0.93473 0.95335 0.98118 1.21077 0.87964 0.91699 0.98651 1.45814 1.25459 1.35067 1.30599 1.21447 0.87904 0.80705 0.80276 1.90663 1.45559 1.71557 1.39680 1.21637 0.95224 0.97004 1.01820 1.18709 0.95375 0.93193 0.92532 1.21704 1.07157 1.17091 1.12220 0.90343 1.26183 1.00007 0.99471 0.94942 1.70186 1.36747 1.35295 1.15697 0.85335 0.78753 0.78058 0.77846 1.18551 1.21436 1.18648 1.25764 0.85127 0.95860 1.05168 1.84497 1.17631 1.36802 1.69803 1.21227 0.94947 0.96799 0.97227 1.21260 0.92805 0.99454 1.01117 0.89618 0.90629 0.89897 0.82442 0.84039 0.85486 0.88273 0.94075 0.93537 0.74132 0.87541 0.87264 1.00052 1.00216 0.92893 0.71979 0.85923 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.00 71.23 0.71 -0.04 16 2 C -0.07 -0.82 5.89 -19.81 -0.12 -0.94 16 3 C -0.12 -1.47 9.68 22.23 0.22 -1.25 16 4 C -0.09 -1.40 9.72 22.53 0.22 -1.18 16 5 C -0.05 -1.07 5.87 -20.10 -0.12 -1.19 16 6 C 0.22 5.35 7.90 87.32 0.69 6.04 16 7 N -0.50 -13.52 10.90 -293.20 -3.20 -16.72 16 8 C -0.03 -0.71 6.36 41.36 0.26 -0.44 16 9 C -0.03 -0.55 5.89 29.85 0.18 -0.37 16 10 C 0.13 3.55 5.65 86.38 0.49 4.03 16 11 N -0.72 -19.71 5.56 -463.06 -2.57 -22.29 16 12 C 0.51 20.55 7.83 87.66 0.69 21.24 16 13 O -0.59 -31.23 15.98 -3.03 -0.05 -31.28 16 14 C -0.12 -4.78 5.64 29.85 0.17 -4.61 16 15 C 0.04 2.26 4.26 29.85 0.13 2.39 16 16 C -0.54 -31.41 9.11 25.60 0.23 -31.18 16 17 H 0.08 4.07 7.74 -2.91 -0.02 4.05 16 18 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 19 N -0.94 -60.76 13.29 21.45 0.28 -60.48 16 20 Si 0.98 44.75 29.54 68.60 2.03 46.78 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 24 C -0.05 -0.77 12.06 66.97 0.81 0.04 16 25 O -0.20 -4.12 10.52 -8.34 -0.09 -4.20 16 26 C -0.08 -1.73 9.69 22.53 0.22 -1.51 16 27 C -0.13 -2.01 9.68 22.23 0.22 -1.79 16 28 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.43 8.08 -2.38 -0.02 0.41 16 30 H 0.08 0.33 8.08 -2.39 -0.02 0.31 16 31 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 32 H 0.14 1.81 7.90 -2.91 -0.02 1.78 16 33 H 0.13 1.15 8.11 -2.39 -0.02 1.13 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.42 7.61 8.47 -92.71 -0.79 6.82 16 38 H 0.11 3.77 8.14 -2.39 -0.02 3.76 16 39 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 40 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 41 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 42 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 43 H 0.26 1.27 8.06 -2.91 -0.02 1.24 16 44 H 0.12 2.86 7.83 -2.91 -0.02 2.84 16 45 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -88.73 391.54 2.07 -86.67 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.21 Total: 12.33 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 5.45 Total: -10.81 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -5.48 Total: -99.48 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.14 Total: -35.48 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -88.73 2.07 -86.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291613946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.815 kcal (2) G-P(sol) polarization free energy of solvation -88.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds