Wall clock time and date at job start Tue Mar 31 2020 15:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41380 * 126.58341 * 2 1 4 4 C 1.34514 * 106.84329 * 179.97438 * 3 2 1 5 5 O 1.34305 * 108.41935 * 359.73239 * 4 3 2 6 6 C 1.34304 * 109.47477 * 0.44251 * 5 4 3 7 7 C 1.50699 * 125.78831 * 179.82601 * 6 5 4 8 8 N 1.46496 * 109.47313 * 269.69319 * 7 6 5 9 9 C 1.34777 * 120.00258 * 180.02562 * 8 7 6 10 10 O 1.21579 * 119.99978 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99908 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99635 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47431 * 324.99476 * 12 11 9 14 14 C 1.53003 * 109.47057 * 205.00313 * 12 11 9 15 15 C 1.50700 * 109.47468 * 64.99659 * 14 12 11 16 16 H 1.08001 * 119.99441 * 0.02562 * 15 14 12 17 17 C 1.37876 * 120.00214 * 180.02562 * 15 14 12 18 18 N 1.31517 * 120.00022 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00062 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47316 * 60.00159 * 19 17 15 21 21 H 1.48503 * 109.47091 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47108 * 300.00044 * 19 17 15 23 23 C 1.50696 * 109.47226 * 85.00243 * 12 11 9 24 24 C 1.38232 * 120.00207 * 39.72661 * 23 12 11 25 25 C 1.38237 * 120.00415 * 179.81572 * 24 23 12 26 26 C 1.38239 * 119.99277 * 0.38823 * 25 24 23 27 27 C 1.38232 * 120.00347 * 359.86052 * 26 25 24 28 28 C 1.38231 * 119.99992 * 359.95513 * 27 26 25 29 29 H 1.08998 * 109.47511 * 270.04711 * 1 2 3 30 30 H 1.09003 * 109.47125 * 30.04131 * 1 2 3 31 31 H 1.09002 * 109.47705 * 150.03848 * 1 2 3 32 32 H 1.07997 * 126.57821 * 359.97438 * 3 2 1 33 33 H 1.08000 * 125.79040 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.47247 * 149.69245 * 7 6 5 35 35 H 1.09004 * 109.47103 * 29.69123 * 7 6 5 36 36 H 0.96999 * 119.99694 * 359.97438 * 8 7 6 37 37 H 0.96995 * 120.00015 * 359.72369 * 11 9 8 38 38 H 1.08999 * 109.47427 * 185.00341 * 14 12 11 39 39 H 1.09010 * 109.47093 * 305.00188 * 14 12 11 40 40 H 0.96991 * 120.00183 * 180.02562 * 18 17 15 41 41 H 1.08004 * 119.99607 * 359.97438 * 24 23 12 42 42 H 1.07995 * 120.00013 * 180.22954 * 25 24 23 43 43 H 1.08003 * 119.99238 * 179.83680 * 26 25 24 44 44 H 1.08000 * 119.99501 * 179.97438 * 27 26 25 45 45 H 1.08002 * 119.99670 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6156 0.6809 0.0006 5 8 3.5847 -0.6617 0.0069 6 6 2.3085 -1.0802 0.0006 7 6 1.8520 -2.5164 0.0009 8 7 1.7047 -2.9823 -1.3802 9 6 1.3030 -4.2450 -1.6263 10 8 1.0632 -4.9977 -0.7020 11 7 1.1669 -4.6734 -2.8969 12 6 0.7308 -6.0461 -3.1643 13 1 1.1378 -6.7116 -2.4030 14 6 1.2324 -6.4813 -4.5427 15 6 2.7384 -6.5358 -4.5352 16 1 3.2832 -6.2855 -3.6369 17 6 3.4206 -6.9051 -5.6750 18 7 2.7571 -7.2094 -6.7690 19 14 5.2873 -6.9733 -5.6653 20 1 5.7418 -7.9498 -4.6430 21 1 5.7742 -7.3944 -7.0036 22 1 5.8301 -5.6295 -5.3420 23 6 -0.7745 -6.1097 -3.1344 24 6 -1.5207 -5.0849 -3.6854 25 6 -2.9016 -5.1450 -3.6615 26 6 -3.5362 -6.2263 -3.0792 27 6 -2.7900 -7.2488 -2.5237 28 6 -1.4092 -7.1904 -2.5511 29 1 -0.3634 0.0008 1.0276 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3634 -0.8903 -0.5132 32 1 2.0367 2.1689 -0.0004 33 1 4.5060 1.2922 0.0011 34 1 0.8936 -2.5929 0.5143 35 1 2.5900 -3.1321 0.5152 36 1 1.8956 -2.3817 -2.1176 37 1 1.3544 -4.0717 -3.6343 38 1 0.8343 -7.4680 -4.7795 39 1 0.8986 -5.7651 -5.2937 40 1 3.2370 -7.4696 -7.5707 41 1 -1.0248 -4.2383 -4.1370 42 1 -3.4845 -4.3460 -4.0953 43 1 -4.6151 -6.2720 -3.0582 44 1 -3.2860 -8.0933 -2.0685 45 1 -0.8263 -7.9891 -2.1166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292664627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:15 Heat of formation + Delta-G solvation = -18.311470 kcal Electronic energy + Delta-G solvation = -27303.034672 eV Core-core repulsion = 23478.980334 eV Total energy + Delta-G solvation = -3824.054338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.59614 -41.22064 -39.87761 -37.04215 -36.05727 -34.89948 -34.70214 -32.69959 -31.69577 -31.26588 -30.48787 -28.94416 -26.85687 -25.95333 -23.77067 -23.35712 -22.43176 -22.21574 -21.30387 -20.81925 -19.48045 -18.65136 -18.01315 -17.59982 -17.37556 -16.89276 -16.53283 -16.49287 -15.97466 -15.82582 -15.53329 -15.08862 -14.89714 -14.47229 -14.39040 -14.15741 -14.08080 -13.99205 -13.65016 -13.63311 -13.60667 -13.40896 -13.25869 -12.90715 -12.64166 -12.44677 -12.37741 -12.13313 -11.84794 -11.56978 -11.36564 -11.32449 -10.58202 -10.55409 -10.35311 -9.77738 -9.70621 -9.49773 -9.43481 -8.19671 -6.29373 0.51480 0.59403 0.60340 1.39459 1.40982 1.48991 1.54925 1.87856 2.12882 2.24335 2.40056 2.98900 3.13794 3.44500 3.63383 3.93670 4.01920 4.03026 4.06985 4.24005 4.27600 4.35289 4.43233 4.51107 4.65691 4.68240 4.78854 4.79431 4.82008 4.84617 4.91183 5.15806 5.16496 5.23150 5.26189 5.30124 5.37840 5.44664 5.62442 5.64267 5.64818 5.67387 5.79115 5.87951 6.08961 6.18304 6.18521 6.23391 6.82912 7.12451 7.39348 7.63221 8.90834 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007742 B = 0.004142 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3615.679739 B = 6758.392117 C = 9628.805880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.150 4.150 3 C -0.226 4.226 4 C -0.026 4.026 5 O -0.191 6.191 6 C -0.061 4.061 7 C 0.229 3.771 8 N -0.734 5.734 9 C 0.706 3.294 10 O -0.633 6.633 11 N -0.711 5.711 12 C 0.219 3.781 13 H 0.057 0.943 14 C 0.039 3.961 15 C -0.529 4.529 16 H 0.051 0.949 17 C 0.013 3.987 18 N -0.925 5.925 19 Si 0.954 3.046 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.269 1.269 23 C -0.097 4.097 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.124 4.124 28 C -0.133 4.133 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.172 0.828 33 H 0.238 0.762 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.407 0.593 37 H 0.404 0.596 38 H 0.006 0.994 39 H 0.013 0.987 40 H 0.264 0.736 41 H 0.119 0.881 42 H 0.146 0.854 43 H 0.151 0.849 44 H 0.143 0.857 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 16.795 11.107 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.153 4.153 3 C -0.245 4.245 4 C -0.093 4.093 5 O -0.088 6.088 6 C -0.111 4.111 7 C 0.106 3.894 8 N -0.391 5.391 9 C 0.406 3.594 10 O -0.515 6.515 11 N -0.363 5.363 12 C 0.113 3.887 13 H 0.075 0.925 14 C 0.001 3.999 15 C -0.567 4.567 16 H 0.070 0.930 17 C -0.186 4.186 18 N -0.565 5.565 19 Si 0.780 3.220 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.194 1.194 23 C -0.098 4.098 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.152 4.152 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.190 0.810 33 H 0.255 0.745 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.243 0.757 37 H 0.239 0.761 38 H 0.024 0.976 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.137 0.863 42 H 0.163 0.837 43 H 0.169 0.831 44 H 0.161 0.839 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.260 15.842 11.770 21.028 hybrid contribution 1.463 0.234 -0.914 1.741 sum -5.797 16.076 10.856 20.246 Atomic orbital electron populations 1.20297 0.87940 1.03227 1.02988 1.20655 0.98126 0.92018 1.04456 1.22082 0.92395 1.00650 1.09362 1.24878 1.01355 0.79779 1.03297 1.84047 1.28914 1.24260 1.71577 1.21949 0.81555 0.95722 1.11860 1.19223 1.01312 0.86020 0.82851 1.44996 1.73603 1.11671 1.08850 1.15987 0.77874 0.82074 0.83444 1.90850 1.59878 1.56275 1.44457 1.44926 1.71536 1.14293 1.05589 1.19590 0.88828 0.81886 0.98372 0.92495 1.19132 0.95023 0.95681 0.90051 1.21365 0.92479 1.45838 0.97018 0.93044 1.25738 1.02772 0.94870 0.95218 1.70055 1.37305 1.46834 1.02304 0.85670 0.80457 0.78776 0.77123 1.20133 1.20723 1.19366 1.20467 0.95800 0.95675 0.97855 1.21041 0.94731 0.98355 0.99657 1.21425 0.93834 0.99350 0.99644 1.21459 1.01051 0.93870 0.98351 1.21378 0.92940 0.99914 0.99952 1.21176 0.95904 0.98081 1.00002 0.90318 0.89915 0.92091 0.81004 0.74549 0.88451 0.91519 0.75748 0.76080 0.97597 0.96899 0.92714 0.86278 0.83655 0.83147 0.83899 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 9.99 71.23 0.71 -0.68 16 2 C -0.15 -2.93 6.16 -19.95 -0.12 -3.05 16 3 C -0.23 -3.62 10.87 22.19 0.24 -3.38 16 4 C -0.03 -0.41 12.09 66.97 0.81 0.40 16 5 O -0.19 -4.46 10.65 -2.51 -0.03 -4.48 16 6 C -0.06 -1.42 6.69 24.83 0.17 -1.25 16 7 C 0.23 6.01 5.82 85.63 0.50 6.51 16 8 N -0.73 -21.14 5.55 -482.30 -2.68 -23.81 16 9 C 0.71 26.41 8.52 179.05 1.53 27.93 16 10 O -0.63 -28.40 16.01 -3.96 -0.06 -28.46 16 11 N -0.71 -26.91 4.02 -461.42 -1.86 -28.76 16 12 C 0.22 9.50 2.12 44.25 0.09 9.60 16 13 H 0.06 2.78 7.44 -2.39 -0.02 2.76 16 14 C 0.04 1.96 4.50 29.85 0.13 2.09 16 15 C -0.53 -29.07 8.84 25.60 0.23 -28.84 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 17 C 0.01 0.71 5.46 84.65 0.46 1.17 16 18 N -0.93 -54.24 13.29 21.45 0.28 -53.95 16 19 Si 0.95 43.97 29.54 68.60 2.03 45.99 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C -0.10 -3.74 4.91 -19.87 -0.10 -3.84 16 24 C -0.12 -4.01 9.33 22.27 0.21 -3.80 16 25 C -0.12 -3.43 10.05 22.27 0.22 -3.20 16 26 C -0.13 -3.33 10.05 22.27 0.22 -3.10 16 27 C -0.12 -3.59 10.05 22.27 0.22 -3.37 16 28 C -0.13 -4.81 9.67 22.27 0.22 -4.60 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.08 7.78 -2.39 -0.02 1.06 16 32 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.24 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.10 2.46 7.76 -2.39 -0.02 2.44 16 35 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.41 10.07 8.48 -92.71 -0.79 9.29 16 37 H 0.40 13.91 8.62 -92.71 -0.80 13.11 16 38 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.26 14.68 8.31 -92.72 -0.77 13.91 16 41 H 0.12 3.76 7.71 -2.91 -0.02 3.74 16 42 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 43 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 44 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 45 H 0.11 4.06 8.04 -2.91 -0.02 4.04 16 Total: -1.00 -72.23 388.35 2.86 -69.38 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -0.57 Total: 35.52 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 5.74 Total: -11.41 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -4.25 Total: -106.53 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.09 Total: -32.95 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -72.23 2.86 -69.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292664627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.066 kcal (2) G-P(sol) polarization free energy of solvation -72.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds