Wall clock time and date at job start Tue Mar 31 2020 15:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50695 * 119.99948 * 2 1 4 4 N 1.46500 * 109.47353 * 124.99650 * 3 2 1 5 5 C 1.46503 * 119.99988 * 269.99635 * 4 3 2 6 6 C 1.50695 * 109.47039 * 270.00172 * 5 4 3 7 7 H 1.08001 * 120.00298 * 359.97438 * 6 5 4 8 8 C 1.37886 * 119.99591 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99528 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00178 * 359.97438 * 8 6 5 11 11 H 1.48492 * 109.47284 * 89.99830 * 10 8 6 12 12 H 1.48503 * 109.47084 * 210.00331 * 10 8 6 13 13 H 1.48501 * 109.47012 * 329.99858 * 10 8 6 14 14 C 1.34781 * 120.00104 * 89.99803 * 4 3 2 15 15 O 1.21581 * 120.00034 * 179.97438 * 14 4 3 16 16 N 1.34775 * 119.99598 * 0.02562 * 14 4 3 17 17 C 1.40148 * 119.99938 * 184.58414 * 16 14 4 18 18 C 1.39319 * 119.93888 * 144.91232 * 17 16 14 19 19 C 1.37742 * 120.62361 * 179.97438 * 18 17 16 20 20 C 1.38948 * 120.05096 * 0.04462 * 19 18 17 21 21 O 1.34924 * 133.30808 * 179.97438 * 20 19 18 22 22 C 1.34431 * 110.88810 * 179.97438 * 21 20 19 23 23 C 1.50694 * 124.92199 * 179.97438 * 22 21 20 24 24 C 1.34000 * 110.15348 * 0.02562 * 22 21 20 25 25 C 1.50700 * 126.90246 * 179.97438 * 24 22 21 26 26 C 1.40460 * 119.44070 * 359.93511 * 20 19 18 27 27 C 1.38307 * 119.93719 * 324.89565 * 17 16 14 28 28 H 1.07994 * 119.99657 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00028 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99982 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47453 * 4.99349 * 3 2 1 32 32 H 1.09004 * 109.46714 * 244.99513 * 3 2 1 33 33 H 1.08997 * 109.46893 * 30.00298 * 5 4 3 34 34 H 1.09003 * 109.46897 * 149.99735 * 5 4 3 35 35 H 0.97007 * 119.99985 * 180.02562 * 9 8 6 36 36 H 0.97004 * 120.00692 * 4.57763 * 16 14 4 37 37 H 1.08000 * 119.69106 * 0.02562 * 18 17 16 38 38 H 1.07995 * 119.97103 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.47560 * 0.03109 * 23 22 21 40 40 H 1.09005 * 109.47067 * 120.02984 * 23 22 21 41 41 H 1.08998 * 109.47460 * 240.02886 * 23 22 21 42 42 H 1.08995 * 109.47411 * 90.01631 * 25 24 22 43 43 H 1.09005 * 109.47076 * 210.02320 * 25 24 22 44 44 H 1.09001 * 109.46869 * 330.01524 * 25 24 22 45 45 H 1.08011 * 120.22600 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1315 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3438 2.4802 7 1 3.3040 3.8370 1.6366 8 6 2.5192 4.0668 3.6084 9 7 2.7687 5.3571 3.6569 10 14 1.7246 3.2136 5.0678 11 1 2.7805 2.7224 5.9892 12 1 0.8485 4.1739 5.7859 13 1 0.9129 2.0661 4.5886 14 6 4.2497 0.8662 0.9825 15 8 5.0219 0.8890 1.9214 16 7 4.6500 0.3762 -0.2075 17 6 5.9228 -0.1958 -0.3375 18 6 6.1132 -1.2821 -1.1888 19 6 7.3582 -1.8549 -1.3277 20 6 8.4393 -1.3512 -0.6148 21 8 9.7425 -1.6936 -0.5455 22 6 10.4050 -0.8888 0.3034 23 6 11.8751 -0.9906 0.6188 24 6 9.5685 0.0164 0.8292 25 6 9.9122 1.0970 1.8218 26 6 8.2501 -0.2558 0.2439 27 6 6.9875 0.3192 0.3794 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3586 2.1316 0.0894 32 1 2.6214 1.4025 -0.9314 33 1 1.4887 1.6968 2.5459 34 1 3.0989 1.3605 3.2260 35 1 2.5405 5.8657 4.4508 36 1 4.0572 0.4194 -0.9741 37 1 5.2771 -1.6782 -1.7458 38 1 7.4940 -2.6963 -1.9909 39 1 12.3119 -1.8136 0.0532 40 1 12.3706 -0.0588 0.3459 41 1 12.0061 -1.1728 1.6854 42 1 10.2048 2.0011 1.2878 43 1 9.0429 1.3082 2.4446 44 1 10.7374 0.7634 2.4509 45 1 6.8417 1.1612 1.0400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296553686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:17 Heat of formation + Delta-G solvation = 31.493030 kcal Electronic energy + Delta-G solvation = -27486.250011 eV Core-core repulsion = 23664.355358 eV Total energy + Delta-G solvation = -3821.894653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.36915 -40.14686 -37.80129 -35.84002 -34.37079 -34.16678 -33.14783 -32.15892 -31.13712 -29.66455 -28.60777 -27.67178 -26.11311 -25.62905 -23.38536 -22.12366 -21.55097 -20.18386 -19.93660 -19.32907 -17.97729 -17.29956 -16.94227 -16.61371 -16.25572 -15.81633 -15.18040 -14.99232 -14.49243 -14.25753 -13.99743 -13.68562 -13.59936 -13.47390 -13.35578 -13.01207 -12.99396 -12.91790 -12.55546 -12.37868 -12.29907 -12.14171 -11.85889 -11.74294 -11.63959 -11.27223 -10.97199 -10.89530 -10.54251 -10.19545 -9.87269 -9.73233 -9.59802 -9.33942 -9.29013 -8.59506 -8.03792 -7.91518 -7.56430 -6.09508 -4.08272 0.99851 1.44270 2.27836 2.35341 2.75054 3.13107 3.29494 3.35481 3.37727 3.59768 3.97114 4.27620 4.39067 4.46974 4.73580 4.92101 4.99627 5.06275 5.13393 5.22138 5.23271 5.24195 5.25897 5.37668 5.45546 5.56972 5.59218 5.71718 5.75515 5.86819 5.90047 6.00266 6.03652 6.18410 6.32188 6.38398 6.52421 6.60412 6.64066 6.65915 6.78263 6.87687 7.03251 7.23397 7.31649 7.45554 7.61011 8.41107 8.46328 8.93361 9.11115 9.50788 11.03792 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012574 B = 0.003448 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.370937 B = 8117.554520 C = 9911.652472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.173 4.173 3 C 0.137 3.863 4 N -0.598 5.598 5 C 0.232 3.768 6 C -0.530 4.530 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.702 3.298 15 O -0.566 6.566 16 N -0.693 5.693 17 C 0.157 3.843 18 C -0.120 4.120 19 C -0.093 4.093 20 C 0.030 3.970 21 O -0.197 6.197 22 C 0.018 3.982 23 C -0.074 4.074 24 C -0.170 4.170 25 C -0.084 4.084 26 C -0.105 4.105 27 C -0.072 4.072 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.038 0.962 35 H 0.264 0.736 36 H 0.403 0.597 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.820 -14.184 -11.360 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.193 4.193 3 C 0.013 3.987 4 N -0.332 5.332 5 C 0.112 3.888 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.404 3.596 15 O -0.442 6.442 16 N -0.343 5.343 17 C 0.061 3.939 18 C -0.141 4.141 19 C -0.112 4.112 20 C -0.017 4.017 21 O -0.099 6.099 22 C -0.029 4.029 23 C -0.131 4.131 24 C -0.172 4.172 25 C -0.140 4.140 26 C -0.106 4.106 27 C -0.093 4.093 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.240 0.760 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.381 -14.152 -10.616 20.024 hybrid contribution -0.961 -0.236 0.443 1.084 sum 8.420 -14.388 -10.173 19.529 Atomic orbital electron populations 1.23854 0.95810 1.01910 1.00107 1.23469 0.96512 0.98992 1.00290 1.20560 0.93206 0.95738 0.89219 1.47203 1.09042 1.63290 1.13625 1.19604 0.94766 0.94969 0.79488 1.21345 1.41185 0.91165 1.03125 0.90721 1.24832 0.95277 0.94709 0.98082 1.69895 1.47763 1.06609 1.29252 0.86876 0.79898 0.79669 0.83415 1.19877 1.21074 1.19024 1.15875 0.82977 0.78491 0.82290 1.90890 1.52541 1.61297 1.39513 1.42857 1.15496 1.63882 1.12078 1.17247 0.84286 0.93576 0.98762 1.20588 0.96693 0.95202 1.01626 1.19515 0.88776 1.01663 1.01224 1.19493 0.83278 0.97760 1.01205 1.83908 1.18878 1.51414 1.55730 1.21993 0.95041 0.92176 0.93735 1.20358 0.86103 1.03852 1.02758 1.20868 0.91328 1.01357 1.03635 1.20185 1.02242 0.95259 0.96335 1.19660 0.94035 0.97608 0.99304 1.20786 0.88402 1.00371 0.99709 0.88135 0.88673 0.87658 0.88754 0.91155 0.95019 0.94424 0.92561 0.76018 0.84714 0.85047 0.90540 0.89525 0.89517 0.91257 0.90717 0.91594 0.83136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 14.32 29.01 0.42 -1.67 16 2 C -0.17 -2.23 9.85 -36.03 -0.35 -2.59 16 3 C 0.14 2.07 5.65 -5.20 -0.03 2.04 16 4 N -0.60 -12.09 2.44 -182.19 -0.44 -12.53 16 5 C 0.23 5.62 4.23 -5.19 -0.02 5.60 16 6 C -0.53 -15.01 9.94 -34.44 -0.34 -15.36 16 7 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 10 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 11 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 14 C 0.70 14.47 8.12 -86.92 -0.71 13.76 16 15 O -0.57 -14.01 13.35 5.29 0.07 -13.94 16 16 N -0.69 -10.98 5.22 -14.20 -0.07 -11.06 16 17 C 0.16 2.48 6.30 -83.63 -0.53 1.96 16 18 C -0.12 -1.50 9.93 -39.36 -0.39 -1.89 16 19 C -0.09 -1.16 10.05 -39.50 -0.40 -1.56 16 20 C 0.03 0.45 7.41 -38.48 -0.29 0.16 16 21 O -0.20 -2.80 10.59 3.63 0.04 -2.76 16 22 C 0.02 0.22 7.23 -35.80 -0.26 -0.04 16 23 C -0.07 -0.58 9.86 36.00 0.35 -0.23 16 24 C -0.17 -2.45 6.35 -102.65 -0.65 -3.10 16 25 C -0.08 -1.03 10.18 36.01 0.37 -0.66 16 26 C -0.10 -1.72 6.38 -105.17 -0.67 -2.39 16 27 C -0.07 -1.28 8.74 -39.12 -0.34 -1.63 16 28 H 0.10 1.15 7.84 -52.49 -0.41 0.73 16 29 H 0.09 0.95 8.06 -52.49 -0.42 0.52 16 30 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 32 H 0.07 0.87 6.30 -51.93 -0.33 0.54 16 33 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 34 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.40 4.99 6.52 -40.82 -0.27 4.72 16 37 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.07 0.64 7.85 -51.93 -0.41 0.23 16 45 H 0.15 3.11 6.22 -52.48 -0.33 2.79 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -35.21 379.53 -8.78 -44.00 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.26 Total: 5.98 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -3.94 Total: -5.55 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.25 Total: -50.26 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.11 Total: -16.70 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.21 -8.78 -44.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296553686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.492 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds