Wall clock time and date at job start Tue Mar 31 2020 15:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50695 * 119.99948 * 2 1 4 4 N 1.46500 * 109.47353 * 124.99650 * 3 2 1 5 5 C 1.46503 * 119.99988 * 269.99635 * 4 3 2 6 6 C 1.50695 * 109.47039 * 270.00172 * 5 4 3 7 7 H 1.08001 * 120.00298 * 359.97438 * 6 5 4 8 8 C 1.37886 * 119.99591 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99528 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00178 * 359.97438 * 8 6 5 11 11 H 1.48492 * 109.47284 * 89.99830 * 10 8 6 12 12 H 1.48503 * 109.47084 * 210.00331 * 10 8 6 13 13 H 1.48501 * 109.47012 * 329.99858 * 10 8 6 14 14 C 1.34781 * 120.00104 * 89.99803 * 4 3 2 15 15 O 1.21581 * 120.00034 * 179.97438 * 14 4 3 16 16 N 1.34775 * 119.99598 * 0.02562 * 14 4 3 17 17 C 1.40148 * 119.99938 * 184.58414 * 16 14 4 18 18 C 1.39319 * 119.93888 * 144.91232 * 17 16 14 19 19 C 1.37742 * 120.62361 * 179.97438 * 18 17 16 20 20 C 1.38948 * 120.05096 * 0.04462 * 19 18 17 21 21 O 1.34924 * 133.30808 * 179.97438 * 20 19 18 22 22 C 1.34431 * 110.88810 * 179.97438 * 21 20 19 23 23 C 1.50694 * 124.92199 * 179.97438 * 22 21 20 24 24 C 1.34000 * 110.15348 * 0.02562 * 22 21 20 25 25 C 1.50700 * 126.90246 * 179.97438 * 24 22 21 26 26 C 1.40460 * 119.44070 * 359.93511 * 20 19 18 27 27 C 1.38307 * 119.93719 * 324.89565 * 17 16 14 28 28 H 1.07994 * 119.99657 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00028 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99982 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47453 * 4.99349 * 3 2 1 32 32 H 1.09004 * 109.46714 * 244.99513 * 3 2 1 33 33 H 1.08997 * 109.46893 * 30.00298 * 5 4 3 34 34 H 1.09003 * 109.46897 * 149.99735 * 5 4 3 35 35 H 0.97007 * 119.99985 * 180.02562 * 9 8 6 36 36 H 0.97004 * 120.00692 * 4.57763 * 16 14 4 37 37 H 1.08000 * 119.69106 * 0.02562 * 18 17 16 38 38 H 1.07995 * 119.97103 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.47560 * 0.03109 * 23 22 21 40 40 H 1.09005 * 109.47067 * 120.02984 * 23 22 21 41 41 H 1.08998 * 109.47460 * 240.02886 * 23 22 21 42 42 H 1.08995 * 109.47411 * 90.01631 * 25 24 22 43 43 H 1.09005 * 109.47076 * 210.02320 * 25 24 22 44 44 H 1.09001 * 109.46869 * 330.01524 * 25 24 22 45 45 H 1.08011 * 120.22600 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1315 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3438 2.4802 7 1 3.3040 3.8370 1.6366 8 6 2.5192 4.0668 3.6084 9 7 2.7687 5.3571 3.6569 10 14 1.7246 3.2136 5.0678 11 1 2.7805 2.7224 5.9892 12 1 0.8485 4.1739 5.7859 13 1 0.9129 2.0661 4.5886 14 6 4.2497 0.8662 0.9825 15 8 5.0219 0.8890 1.9214 16 7 4.6500 0.3762 -0.2075 17 6 5.9228 -0.1958 -0.3375 18 6 6.1132 -1.2821 -1.1888 19 6 7.3582 -1.8549 -1.3277 20 6 8.4393 -1.3512 -0.6148 21 8 9.7425 -1.6936 -0.5455 22 6 10.4050 -0.8888 0.3034 23 6 11.8751 -0.9906 0.6188 24 6 9.5685 0.0164 0.8292 25 6 9.9122 1.0970 1.8218 26 6 8.2501 -0.2558 0.2439 27 6 6.9875 0.3192 0.3794 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3586 2.1316 0.0894 32 1 2.6214 1.4025 -0.9314 33 1 1.4887 1.6968 2.5459 34 1 3.0989 1.3605 3.2260 35 1 2.5405 5.8657 4.4508 36 1 4.0572 0.4194 -0.9741 37 1 5.2771 -1.6782 -1.7458 38 1 7.4940 -2.6963 -1.9909 39 1 12.3119 -1.8136 0.0532 40 1 12.3706 -0.0588 0.3459 41 1 12.0061 -1.1728 1.6854 42 1 10.2048 2.0011 1.2878 43 1 9.0429 1.3082 2.4446 44 1 10.7374 0.7634 2.4509 45 1 6.8417 1.1612 1.0400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296553686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:16 Heat of formation + Delta-G solvation = 9.735487 kcal Electronic energy + Delta-G solvation = -27487.193489 eV Core-core repulsion = 23664.355358 eV Total energy + Delta-G solvation = -3822.838131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.44380 -41.63519 -39.05745 -37.30502 -35.68257 -35.33694 -34.86197 -33.81117 -32.07715 -31.01460 -30.00380 -29.02787 -27.11973 -26.97090 -25.00887 -23.55215 -22.75678 -21.42392 -21.01915 -20.64188 -19.35493 -19.07742 -18.61379 -17.80168 -17.31452 -17.11418 -16.56380 -16.48705 -15.94064 -15.66743 -15.38964 -15.11411 -14.84365 -14.57776 -14.36658 -14.23768 -14.16370 -13.95475 -13.80642 -13.64640 -13.52937 -13.30576 -13.14137 -13.08466 -12.94782 -12.77323 -12.52940 -12.29109 -12.01794 -11.95718 -11.75004 -11.30375 -10.95414 -10.83561 -10.75335 -10.35542 -9.59367 -9.03821 -8.86144 -8.34480 -6.39391 -0.07393 0.24624 1.22386 1.31121 1.32734 1.36298 1.44485 1.71134 1.81777 2.10344 2.30206 2.72515 2.93858 3.00943 3.45810 3.66946 3.91117 3.99816 4.11384 4.15695 4.22584 4.25838 4.33214 4.44949 4.56415 4.65071 4.66182 4.70614 4.76759 4.81703 4.84098 4.85667 4.94548 5.01357 5.06032 5.15097 5.25949 5.30380 5.32637 5.44117 5.48108 5.57908 5.70645 5.79949 5.88844 5.95942 6.20050 6.25537 6.61618 6.95376 7.22147 7.55222 8.82512 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012574 B = 0.003448 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.370937 B = 8117.554520 C = 9911.652472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.185 4.185 3 C 0.132 3.868 4 N -0.604 5.604 5 C 0.245 3.755 6 C -0.536 4.536 7 H 0.028 0.972 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.945 3.055 11 H -0.278 1.278 12 H -0.273 1.273 13 H -0.237 1.237 14 C 0.695 3.305 15 O -0.618 6.618 16 N -0.672 5.672 17 C 0.143 3.857 18 C -0.107 4.107 19 C -0.077 4.077 20 C 0.015 3.985 21 O -0.198 6.198 22 C 0.033 3.967 23 C -0.074 4.074 24 C -0.211 4.211 25 C -0.078 4.078 26 C -0.130 4.130 27 C -0.108 4.108 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.017 0.983 35 H 0.268 0.732 36 H 0.421 0.579 37 H 0.180 0.820 38 H 0.174 0.826 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.095 0.905 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 -17.697 -12.869 23.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.205 4.205 3 C 0.010 3.990 4 N -0.337 5.337 5 C 0.123 3.877 6 C -0.574 4.574 7 H 0.046 0.954 8 C -0.185 4.185 9 N -0.584 5.584 10 Si 0.768 3.232 11 H -0.204 1.204 12 H -0.198 1.198 13 H -0.160 1.160 14 C 0.397 3.603 15 O -0.498 6.498 16 N -0.323 5.323 17 C 0.048 3.952 18 C -0.127 4.127 19 C -0.096 4.096 20 C -0.032 4.032 21 O -0.101 6.101 22 C -0.014 4.014 23 C -0.130 4.130 24 C -0.212 4.212 25 C -0.134 4.134 26 C -0.132 4.132 27 C -0.129 4.129 28 H 0.119 0.881 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.262 0.738 37 H 0.197 0.803 38 H 0.191 0.809 39 H 0.112 0.888 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.060 0.940 44 H 0.114 0.886 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.911 -17.689 -12.215 23.270 hybrid contribution -0.721 0.892 0.799 1.398 sum 8.190 -16.798 -11.415 21.899 Atomic orbital electron populations 1.24089 0.95373 1.03092 0.97466 1.23272 0.96830 0.97783 1.02585 1.20822 0.92721 0.97153 0.88340 1.47147 1.09877 1.62913 1.13775 1.19212 0.95364 0.91875 0.81291 1.21563 1.40532 0.93481 1.01854 0.95359 1.25809 0.95944 0.95337 1.01413 1.70048 1.49401 1.08497 1.30497 0.85753 0.79070 0.79446 0.78925 1.20407 1.19843 1.15999 1.16108 0.82649 0.78464 0.83046 1.90865 1.53958 1.63265 1.41703 1.42512 1.15849 1.62924 1.11014 1.17545 0.83293 0.94817 0.99587 1.20967 0.98181 0.93304 1.00234 1.20061 0.87612 1.01774 1.00123 1.19902 0.84234 0.97597 1.01511 1.83925 1.18567 1.51589 1.55971 1.22824 0.96659 0.90281 0.91649 1.20629 0.82668 1.05585 1.04114 1.21187 0.91308 1.03249 1.05490 1.20152 1.01797 0.95402 0.96095 1.19958 0.94264 0.98584 1.00395 1.20548 0.90493 1.00675 1.01187 0.88102 0.86319 0.86650 0.89763 0.88653 0.92968 0.96460 0.92262 0.73830 0.80291 0.80895 0.88816 0.87644 0.87803 0.90758 0.93951 0.88646 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 14.32 67.77 0.97 -2.29 16 2 C -0.19 -4.33 9.85 25.64 0.25 -4.08 16 3 C 0.13 3.89 5.65 85.63 0.48 4.37 16 4 N -0.60 -24.97 2.44 -848.58 -2.07 -27.04 16 5 C 0.25 12.12 4.23 85.63 0.36 12.48 16 6 C -0.54 -31.86 9.94 25.60 0.25 -31.61 16 7 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 8 C 0.01 0.78 5.47 84.66 0.46 1.24 16 9 N -0.94 -60.21 13.96 21.45 0.30 -59.91 16 10 Si 0.95 44.91 27.47 68.60 1.88 46.79 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 13 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 14 C 0.70 29.96 8.12 179.05 1.45 31.41 16 15 O -0.62 -32.96 13.35 -3.97 -0.05 -33.02 16 16 N -0.67 -21.47 5.22 -317.10 -1.66 -23.12 16 17 C 0.14 4.57 6.30 38.09 0.24 4.81 16 18 C -0.11 -2.39 9.93 22.41 0.22 -2.16 16 19 C -0.08 -1.70 10.05 22.32 0.22 -1.48 16 20 C 0.01 0.43 7.41 22.98 0.17 0.60 16 21 O -0.20 -5.33 10.59 -9.94 -0.11 -5.44 16 22 C 0.03 0.80 7.23 24.72 0.18 0.98 16 23 C -0.07 -0.96 9.86 71.23 0.70 -0.25 16 24 C -0.21 -6.30 6.35 -18.59 -0.12 -6.42 16 25 C -0.08 -2.05 10.18 71.24 0.73 -1.33 16 26 C -0.13 -4.51 6.38 -20.22 -0.13 -4.64 16 27 C -0.11 -4.18 8.74 22.57 0.20 -3.99 16 28 H 0.10 2.03 7.84 -2.91 -0.02 2.01 16 29 H 0.12 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.12 2.50 8.06 -2.91 -0.02 2.47 16 31 H 0.08 2.65 7.72 -2.39 -0.02 2.63 16 32 H 0.10 2.25 6.30 -2.38 -0.02 2.24 16 33 H 0.05 2.37 7.13 -2.39 -0.02 2.35 16 34 H 0.02 0.93 6.85 -2.39 -0.02 0.91 16 35 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 36 H 0.42 9.88 6.52 -92.71 -0.60 9.27 16 37 H 0.18 2.38 8.06 -2.91 -0.02 2.35 16 38 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 40 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.09 1.84 7.85 -2.39 -0.02 1.82 16 45 H 0.11 4.97 6.22 -2.91 -0.02 4.96 16 Total: -1.00 -84.92 379.53 5.30 -79.62 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.35 Total: 24.45 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 6.65 Total: -2.34 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -3.43 Total: -110.07 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.16 Total: -38.45 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -84.92 5.30 -79.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296553686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.354 kcal (2) G-P(sol) polarization free energy of solvation -84.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds