Wall clock time and date at job start Tue Mar 31 2020 15:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30095 * 124.87728 * 2 1 4 4 C 1.35584 * 108.83794 * 179.97438 * 3 2 1 5 5 C 1.40287 * 106.62479 * 0.23049 * 4 3 2 6 6 C 1.38584 * 119.92503 * 180.29237 * 5 4 3 7 7 C 1.38214 * 120.21486 * 359.80820 * 6 5 4 8 8 C 1.38187 * 120.67295 * 359.95469 * 7 6 5 9 9 C 1.39353 * 120.24528 * 0.02562 * 8 7 6 10 10 C 1.47423 * 120.30196 * 179.97438 * 9 8 7 11 11 O 1.21606 * 120.00155 * 142.06179 * 10 9 8 12 12 N 1.34777 * 120.00074 * 322.06226 * 10 9 8 13 13 C 1.46923 * 120.63371 * 175.02702 * 12 10 9 14 14 C 1.53190 * 108.77691 * 126.36987 * 13 12 10 15 15 C 1.53039 * 109.31315 * 54.63366 * 14 13 12 16 16 C 1.52997 * 109.44995 * 178.62265 * 15 14 13 17 17 C 1.50700 * 109.46984 * 295.06008 * 16 15 14 18 18 H 1.07995 * 120.00316 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00051 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99839 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00160 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46942 * 60.00094 * 21 19 17 23 23 H 1.48499 * 109.46850 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46942 * 300.00198 * 21 19 17 25 25 C 1.53039 * 109.54155 * 298.63714 * 15 14 13 26 26 C 1.46928 * 120.62852 * 355.00464 * 12 10 9 27 27 O 1.34142 * 124.88760 * 180.56082 * 2 1 3 28 28 H 1.08997 * 109.47458 * 90.00375 * 1 2 3 29 29 H 1.09003 * 109.47024 * 209.99765 * 1 2 3 30 30 H 1.09001 * 109.47351 * 329.99901 * 1 2 3 31 31 H 1.08000 * 119.89019 * 179.78657 * 6 5 4 32 32 H 1.08003 * 119.66402 * 179.97438 * 7 6 5 33 33 H 1.07997 * 119.87442 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.58824 * 246.15896 * 13 12 10 35 35 H 1.09001 * 109.58599 * 6.58406 * 13 12 10 36 36 H 1.08997 * 109.49763 * 174.58532 * 14 13 12 37 37 H 1.09004 * 109.49752 * 294.68627 * 14 13 12 38 38 H 1.09004 * 109.45953 * 58.65749 * 15 14 13 39 39 H 1.08996 * 109.47567 * 55.06002 * 16 15 14 40 40 H 1.09002 * 109.47452 * 175.06668 * 16 15 14 41 41 H 0.96996 * 119.99977 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.49420 * 301.41776 * 25 15 14 43 43 H 1.09003 * 109.52803 * 181.32837 * 25 15 14 44 44 H 1.09004 * 109.58402 * 353.41850 * 26 12 10 45 45 H 1.08995 * 109.58471 * 113.69757 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2508 1.0673 0.0000 4 6 3.5539 0.6927 0.0006 5 6 3.5682 -0.7101 -0.0045 6 6 4.7763 -1.3892 0.0010 7 6 5.9678 -0.6889 0.0074 8 6 5.9734 0.6930 0.0075 9 6 4.7723 1.3997 0.0017 10 6 4.7767 2.8739 0.0024 11 8 3.9513 3.4848 -0.6491 12 7 5.6956 3.5448 0.7250 13 6 5.7824 5.0096 0.6511 14 6 5.7035 5.5804 2.0705 15 6 6.7830 4.9298 2.9385 16 6 6.7293 5.5227 4.3479 17 6 7.0886 6.9851 4.2917 18 1 7.3306 7.4458 3.3453 19 6 7.1073 7.7354 5.4483 20 7 6.8121 7.1746 6.6007 21 14 7.5520 9.5484 5.3786 22 1 6.5866 10.2615 4.5040 23 1 7.4999 10.1238 6.7466 24 1 8.9234 9.7009 4.8297 25 6 6.5408 3.4204 3.0108 26 6 6.6293 2.8251 1.6020 27 8 2.2742 -1.1003 -0.0108 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 4.7867 -2.4691 0.0006 32 1 6.9042 -1.2271 0.0120 33 1 6.9119 1.2272 0.0121 34 1 6.7293 5.2969 0.1938 35 1 4.9548 5.3951 0.0557 36 1 5.8630 6.6582 2.0385 37 1 4.7210 5.3699 2.4931 38 1 7.7634 5.1197 2.5018 39 1 5.7227 5.4111 4.7510 40 1 7.4378 4.9990 4.9897 41 1 6.8249 7.7025 7.4143 42 1 5.5505 3.2303 3.4245 43 1 7.2959 2.9604 3.6482 44 1 6.3604 1.7692 1.6339 45 1 7.6448 2.9321 1.2209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335500181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:18 Heat of formation + Delta-G solvation = 0.213803 kcal Electronic energy + Delta-G solvation = -27705.686799 eV Core-core repulsion = 23882.435777 eV Total energy + Delta-G solvation = -3823.251022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.54027 -40.26766 -38.03472 -37.17555 -35.07624 -34.06514 -32.31330 -31.92109 -31.52046 -30.25535 -28.50886 -27.95024 -24.98981 -23.71486 -23.61075 -22.42734 -22.14524 -21.53124 -19.95936 -18.91748 -18.50657 -17.28284 -17.13675 -16.69295 -16.22495 -15.78918 -15.62116 -15.01977 -14.52428 -14.21875 -14.02138 -13.89699 -13.67196 -13.58879 -13.25452 -13.22263 -12.98361 -12.81656 -12.54379 -12.42636 -12.20973 -12.06226 -11.70350 -11.50167 -11.16342 -11.01734 -10.76937 -10.71128 -10.66713 -10.41186 -10.16859 -9.70852 -9.62084 -9.28053 -9.07768 -8.90393 -8.72943 -8.34320 -8.30193 -5.98756 -4.00596 0.14739 0.80197 2.15032 2.17467 2.71729 3.04925 3.33804 3.38508 3.40684 3.48730 3.52065 4.14736 4.46180 4.46636 4.54675 4.67737 4.75322 4.87277 4.98422 5.07446 5.09026 5.29473 5.35856 5.36231 5.39076 5.51291 5.58539 5.60119 5.70654 5.83647 5.83998 5.86567 5.93588 5.99567 6.09395 6.22267 6.36948 6.39802 6.55376 6.69128 7.00642 7.03966 7.13382 7.38924 7.55242 7.67120 7.82419 8.00847 8.29249 8.43468 9.05623 9.63145 11.12543 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.002682 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.054175 B =10438.117981 C =10797.936695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.248 3.752 3 N -0.461 5.461 4 C 0.071 3.929 5 C -0.002 4.002 6 C -0.071 4.071 7 C -0.102 4.102 8 C -0.089 4.089 9 C -0.069 4.069 10 C 0.557 3.443 11 O -0.522 6.522 12 N -0.599 5.599 13 C 0.110 3.890 14 C -0.118 4.118 15 C -0.080 4.080 16 C 0.028 3.972 17 C -0.517 4.517 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.896 5.896 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.130 4.130 26 C 0.094 3.906 27 O -0.214 6.214 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.208 -20.504 -14.189 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.037 3.963 3 N -0.190 5.190 4 C -0.043 4.043 5 C -0.052 4.052 6 C -0.090 4.090 7 C -0.120 4.120 8 C -0.108 4.108 9 C -0.073 4.073 10 C 0.344 3.656 11 O -0.399 6.399 12 N -0.332 5.332 13 C -0.011 4.011 14 C -0.156 4.156 15 C -0.099 4.099 16 C -0.009 4.009 17 C -0.555 4.555 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.536 5.536 21 Si 0.717 3.283 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.169 4.169 26 C -0.029 4.029 27 O -0.107 6.107 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.894 -19.494 -14.348 24.912 hybrid contribution 0.542 0.304 0.232 0.664 sum -5.352 -19.190 -14.116 24.416 Atomic orbital electron populations 1.20446 0.80601 1.05768 1.05285 1.26728 0.96853 0.78071 0.94603 1.70728 1.00730 1.28342 1.19240 1.19499 0.91506 0.90665 1.02620 1.20216 0.84169 0.94092 1.06727 1.20016 0.87261 1.00493 1.01273 1.20956 0.97404 0.93628 1.00046 1.21496 0.97220 0.94440 0.97691 1.19199 0.90632 0.93843 1.03647 1.17958 0.81004 0.86335 0.80270 1.90802 1.36965 1.68965 1.43152 1.48053 1.33985 1.07989 1.43212 1.21810 1.02129 0.77846 0.99321 1.21897 0.99814 1.01316 0.92586 1.21195 0.97384 0.91716 0.99607 1.19113 0.97157 0.95226 0.89374 1.21206 1.46240 0.94820 0.93217 0.92623 1.25019 0.95503 0.98308 0.95614 1.69951 1.49191 1.36200 0.98221 0.86703 0.79000 0.85567 0.77004 1.20236 1.21378 1.20297 1.22039 1.02272 0.98153 0.94396 1.22265 0.92719 0.96570 0.91325 1.84484 1.15073 1.36354 1.74741 0.88208 0.88803 0.87375 0.84288 0.83386 0.83320 0.91625 0.89545 0.89699 0.92330 0.92280 0.96673 0.96628 0.93009 0.92059 0.90976 0.89633 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 36.00 0.38 -0.02 16 2 C 0.25 2.91 8.24 -13.02 -0.11 2.81 16 3 N -0.46 -7.30 11.21 -8.48 -0.10 -7.39 16 4 C 0.07 1.07 6.84 -84.44 -0.58 0.50 16 5 C 0.00 -0.02 7.42 -38.68 -0.29 -0.31 16 6 C -0.07 -0.63 10.05 -39.46 -0.40 -1.03 16 7 C -0.10 -0.79 10.00 -39.61 -0.40 -1.19 16 8 C -0.09 -0.90 7.34 -39.19 -0.29 -1.19 16 9 C -0.07 -1.00 5.24 -104.75 -0.55 -1.55 16 10 C 0.56 9.55 7.35 -12.52 -0.09 9.46 16 11 O -0.52 -10.81 16.23 5.27 0.09 -10.73 16 12 N -0.60 -9.39 2.97 -174.04 -0.52 -9.90 16 13 C 0.11 1.81 6.44 -3.71 -0.02 1.78 16 14 C -0.12 -2.23 5.19 -26.61 -0.14 -2.37 16 15 C -0.08 -1.57 2.10 -90.58 -0.19 -1.76 16 16 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 17 C -0.52 -14.18 8.39 -34.44 -0.29 -14.47 16 18 H 0.06 1.47 7.05 -52.49 -0.37 1.10 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 21 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C -0.13 -2.11 5.36 -26.61 -0.14 -2.25 16 26 C 0.09 1.23 4.84 -3.71 -0.02 1.21 16 27 O -0.21 -2.53 10.77 3.72 0.04 -2.49 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.15 0.61 8.06 -52.48 -0.42 0.18 16 33 H 0.15 1.21 6.28 -52.49 -0.33 0.88 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.49 6.99 -51.93 -0.36 1.13 16 36 H 0.08 1.69 6.91 -51.93 -0.36 1.33 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.09 0.97 4.54 -51.93 -0.24 0.73 16 45 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -36.20 366.26 -8.88 -45.08 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.29 Total: -2.26 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -3.34 Total: -8.27 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.12 Total: -43.38 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.13 Total: -13.22 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.20 -8.88 -45.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.289 kcal (2) G-P(sol) polarization free energy of solvation -36.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds