Wall clock time and date at job start Tue Mar 31 2020 15:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30095 * 124.87728 * 2 1 4 4 C 1.35584 * 108.83794 * 179.97438 * 3 2 1 5 5 C 1.40287 * 106.62479 * 0.23049 * 4 3 2 6 6 C 1.38584 * 119.92503 * 180.29237 * 5 4 3 7 7 C 1.38214 * 120.21486 * 359.80820 * 6 5 4 8 8 C 1.38187 * 120.67295 * 359.95469 * 7 6 5 9 9 C 1.39353 * 120.24528 * 0.02562 * 8 7 6 10 10 C 1.47423 * 120.30196 * 179.97438 * 9 8 7 11 11 O 1.21606 * 120.00155 * 142.06179 * 10 9 8 12 12 N 1.34777 * 120.00074 * 322.06226 * 10 9 8 13 13 C 1.46923 * 120.63371 * 175.02702 * 12 10 9 14 14 C 1.53190 * 108.77691 * 126.36987 * 13 12 10 15 15 C 1.53039 * 109.31315 * 54.63366 * 14 13 12 16 16 C 1.52997 * 109.44995 * 178.62265 * 15 14 13 17 17 C 1.50700 * 109.46984 * 295.06008 * 16 15 14 18 18 H 1.07995 * 120.00316 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00051 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99839 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00160 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46942 * 60.00094 * 21 19 17 23 23 H 1.48499 * 109.46850 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46942 * 300.00198 * 21 19 17 25 25 C 1.53039 * 109.54155 * 298.63714 * 15 14 13 26 26 C 1.46928 * 120.62852 * 355.00464 * 12 10 9 27 27 O 1.34142 * 124.88760 * 180.56082 * 2 1 3 28 28 H 1.08997 * 109.47458 * 90.00375 * 1 2 3 29 29 H 1.09003 * 109.47024 * 209.99765 * 1 2 3 30 30 H 1.09001 * 109.47351 * 329.99901 * 1 2 3 31 31 H 1.08000 * 119.89019 * 179.78657 * 6 5 4 32 32 H 1.08003 * 119.66402 * 179.97438 * 7 6 5 33 33 H 1.07997 * 119.87442 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.58824 * 246.15896 * 13 12 10 35 35 H 1.09001 * 109.58599 * 6.58406 * 13 12 10 36 36 H 1.08997 * 109.49763 * 174.58532 * 14 13 12 37 37 H 1.09004 * 109.49752 * 294.68627 * 14 13 12 38 38 H 1.09004 * 109.45953 * 58.65749 * 15 14 13 39 39 H 1.08996 * 109.47567 * 55.06002 * 16 15 14 40 40 H 1.09002 * 109.47452 * 175.06668 * 16 15 14 41 41 H 0.96996 * 119.99977 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.49420 * 301.41776 * 25 15 14 43 43 H 1.09003 * 109.52803 * 181.32837 * 25 15 14 44 44 H 1.09004 * 109.58402 * 353.41850 * 26 12 10 45 45 H 1.08995 * 109.58471 * 113.69757 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2508 1.0673 0.0000 4 6 3.5539 0.6927 0.0006 5 6 3.5682 -0.7101 -0.0045 6 6 4.7763 -1.3892 0.0010 7 6 5.9678 -0.6889 0.0074 8 6 5.9734 0.6930 0.0075 9 6 4.7723 1.3997 0.0017 10 6 4.7767 2.8739 0.0024 11 8 3.9513 3.4848 -0.6491 12 7 5.6956 3.5448 0.7250 13 6 5.7824 5.0096 0.6511 14 6 5.7035 5.5804 2.0705 15 6 6.7830 4.9298 2.9385 16 6 6.7293 5.5227 4.3479 17 6 7.0886 6.9851 4.2917 18 1 7.3306 7.4458 3.3453 19 6 7.1073 7.7354 5.4483 20 7 6.8121 7.1746 6.6007 21 14 7.5520 9.5484 5.3786 22 1 6.5866 10.2615 4.5040 23 1 7.4999 10.1238 6.7466 24 1 8.9234 9.7009 4.8297 25 6 6.5408 3.4204 3.0108 26 6 6.6293 2.8251 1.6020 27 8 2.2742 -1.1003 -0.0108 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 4.7867 -2.4691 0.0006 32 1 6.9042 -1.2271 0.0120 33 1 6.9119 1.2272 0.0121 34 1 6.7293 5.2969 0.1938 35 1 4.9548 5.3951 0.0557 36 1 5.8630 6.6582 2.0385 37 1 4.7210 5.3699 2.4931 38 1 7.7634 5.1197 2.5018 39 1 5.7227 5.4111 4.7510 40 1 7.4378 4.9990 4.9897 41 1 6.8249 7.7025 7.4143 42 1 5.5505 3.2303 3.4245 43 1 7.2959 2.9604 3.6482 44 1 6.3604 1.7692 1.6339 45 1 7.6448 2.9321 1.2209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335500181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:18 Heat of formation + Delta-G solvation = -25.180873 kcal Electronic energy + Delta-G solvation = -27706.787995 eV Core-core repulsion = 23882.435777 eV Total energy + Delta-G solvation = -3824.352218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.38727 -41.47168 -39.05127 -38.48495 -35.99376 -35.73715 -34.10874 -32.78361 -32.54565 -31.43909 -29.81589 -29.13138 -26.58282 -24.97862 -24.61576 -23.69773 -23.17698 -22.76788 -21.35435 -20.19983 -19.40056 -18.54148 -18.12494 -18.01896 -17.75608 -16.84369 -16.57131 -16.48495 -16.16850 -15.37074 -15.12425 -14.94652 -14.76811 -14.70021 -14.52852 -14.25351 -14.10845 -13.91934 -13.70380 -13.62490 -13.32658 -13.10607 -12.99910 -12.82008 -12.74229 -12.49258 -12.37708 -12.28708 -12.13864 -11.82288 -11.69621 -11.34975 -11.08458 -11.04699 -10.76725 -10.52242 -9.88623 -9.70275 -9.48876 -8.17293 -6.26576 -0.68472 0.00631 1.28809 1.40069 1.40819 1.42595 1.49919 1.59508 1.91836 2.41882 2.56590 2.77647 3.16223 3.22049 3.65194 3.75022 3.90015 3.97348 4.00675 4.04652 4.11833 4.15566 4.25802 4.38436 4.50934 4.55317 4.58597 4.62751 4.67680 4.74066 4.77681 4.85591 4.91184 4.96519 5.06988 5.11987 5.14088 5.21530 5.27318 5.31430 5.36308 5.53443 5.55306 5.58590 5.79620 5.89088 6.28373 6.33167 6.53469 6.89991 7.04785 7.41956 8.94449 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.002682 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.054175 B =10438.117981 C =10797.936695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.252 3.748 3 N -0.524 5.524 4 C 0.033 3.967 5 C -0.021 4.021 6 C -0.058 4.058 7 C -0.086 4.086 8 C -0.075 4.075 9 C -0.111 4.111 10 C 0.553 3.447 11 O -0.574 6.574 12 N -0.600 5.600 13 C 0.119 3.881 14 C -0.110 4.110 15 C -0.071 4.071 16 C 0.033 3.967 17 C -0.530 4.530 18 H 0.065 0.935 19 C -0.003 4.003 20 N -0.936 5.936 21 Si 0.959 3.041 22 H -0.271 1.271 23 H -0.287 1.287 24 H -0.263 1.263 25 C -0.126 4.126 26 C 0.099 3.901 27 O -0.215 6.215 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.177 0.823 32 H 0.200 0.800 33 H 0.174 0.826 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.029 0.971 38 H 0.073 0.927 39 H -0.022 1.022 40 H -0.005 1.005 41 H 0.261 0.739 42 H 0.036 0.964 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.943 -22.881 -15.566 27.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.042 3.958 3 N -0.255 5.255 4 C -0.080 4.080 5 C -0.071 4.071 6 C -0.077 4.077 7 C -0.104 4.104 8 C -0.094 4.094 9 C -0.115 4.115 10 C 0.343 3.657 11 O -0.455 6.455 12 N -0.332 5.332 13 C -0.003 4.003 14 C -0.149 4.149 15 C -0.090 4.090 16 C -0.004 4.004 17 C -0.568 4.568 18 H 0.083 0.917 19 C -0.200 4.200 20 N -0.577 5.577 21 Si 0.784 3.216 22 H -0.196 1.196 23 H -0.212 1.212 24 H -0.188 1.188 25 C -0.164 4.164 26 C -0.022 4.022 27 O -0.107 6.107 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.124 0.876 31 H 0.194 0.806 32 H 0.217 0.783 33 H 0.191 0.809 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.092 0.908 39 H -0.004 1.004 40 H 0.013 0.987 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.128 0.872 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.604 -21.891 -15.724 27.193 hybrid contribution -0.195 0.963 0.701 1.207 sum -3.799 -20.928 -15.023 26.041 Atomic orbital electron populations 1.20744 0.77294 1.07036 1.06875 1.27660 0.98352 0.77417 0.92348 1.70682 1.02096 1.30634 1.22063 1.19891 0.91586 0.92454 1.04089 1.20719 0.85233 0.93306 1.07826 1.20655 0.86063 1.02400 0.98541 1.21555 0.98918 0.92554 0.97358 1.21877 0.96320 0.95735 0.95451 1.19193 0.92290 0.92088 1.07915 1.18516 0.80029 0.87800 0.79382 1.90753 1.38907 1.70360 1.45450 1.48143 1.34203 1.07582 1.43227 1.21640 1.02949 0.78727 0.96996 1.21754 0.98126 1.00679 0.94309 1.21044 0.98121 0.93868 0.95965 1.19008 0.94129 0.94798 0.92428 1.21660 1.45482 0.96059 0.93556 0.91730 1.25951 0.95515 1.03232 0.95283 1.70096 1.50597 1.38071 0.98971 0.85597 0.79302 0.79689 0.77059 1.19579 1.21247 1.18811 1.21966 1.01439 0.95889 0.97124 1.22462 0.93977 0.97204 0.88558 1.84479 1.15174 1.36238 1.74784 0.86241 0.85928 0.87565 0.80610 0.78312 0.80886 0.88854 0.91049 0.91080 0.95198 0.90840 1.00406 0.98678 0.93013 0.94468 0.89323 0.87222 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.51 71.23 0.75 -0.01 16 2 C 0.25 6.06 8.24 88.36 0.73 6.79 16 3 N -0.52 -17.58 11.21 -295.52 -3.31 -20.89 16 4 C 0.03 1.01 6.84 39.71 0.27 1.29 16 5 C -0.02 -0.49 7.42 22.85 0.17 -0.32 16 6 C -0.06 -0.80 10.05 22.35 0.22 -0.58 16 7 C -0.09 -0.89 10.00 22.25 0.22 -0.67 16 8 C -0.07 -1.25 7.34 22.53 0.17 -1.09 16 9 C -0.11 -3.15 5.24 -19.94 -0.10 -3.26 16 10 C 0.55 19.43 7.35 86.66 0.64 20.06 16 11 O -0.57 -25.28 16.23 -4.05 -0.07 -25.34 16 12 N -0.60 -18.47 2.97 -822.78 -2.45 -20.92 16 13 C 0.12 3.91 6.44 86.36 0.56 4.46 16 14 C -0.11 -4.31 5.19 30.67 0.16 -4.15 16 15 C -0.07 -2.79 2.10 -10.77 -0.02 -2.82 16 16 C 0.03 1.74 4.45 29.85 0.13 1.87 16 17 C -0.53 -29.58 8.39 25.60 0.21 -29.36 16 18 H 0.06 3.41 7.05 -2.91 -0.02 3.39 16 19 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 20 N -0.94 -57.59 13.29 21.45 0.28 -57.31 16 21 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 25 C -0.13 -3.99 5.36 30.67 0.16 -3.82 16 26 C 0.10 2.34 4.84 86.36 0.42 2.76 16 27 O -0.21 -4.94 10.77 -9.59 -0.10 -5.04 16 28 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 32 H 0.20 0.10 8.06 -2.91 -0.02 0.08 16 33 H 0.17 1.96 6.28 -2.91 -0.02 1.94 16 34 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.07 2.58 6.99 -2.39 -0.02 2.56 16 36 H 0.07 2.93 6.91 -2.39 -0.02 2.91 16 37 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 39 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 40 H -0.01 -0.29 8.14 -2.39 -0.02 -0.30 16 41 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.11 2.12 4.54 -2.38 -0.01 2.11 16 45 H 0.11 1.85 8.09 -2.39 -0.02 1.83 16 Total: -1.00 -86.87 366.26 2.54 -84.33 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.01 Total: 7.15 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 5.15 Total: -8.53 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -5.47 Total: -99.12 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.17 Total: -30.38 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -86.87 2.54 -84.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.151 kcal (2) G-P(sol) polarization free energy of solvation -86.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds