Wall clock time and date at job start Tue Mar 31 2020 15:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30012 * 124.83869 * 2 1 4 4 C 1.35848 * 108.85547 * 179.97438 * 3 2 1 5 5 C 1.39840 * 133.62353 * 179.97438 * 4 3 2 6 6 C 1.36292 * 120.03702 * 180.02562 * 5 4 3 7 7 C 1.40095 * 120.41330 * 359.97438 * 6 5 4 8 8 C 1.47626 * 119.92502 * 180.02562 * 7 6 5 9 9 O 1.21583 * 120.00208 * 42.00862 * 8 7 6 10 10 N 1.34779 * 119.99723 * 222.01641 * 8 7 6 11 11 C 1.46919 * 120.62881 * 5.57748 * 10 8 7 12 12 C 1.53629 * 108.54262 * 126.37117 * 11 10 8 13 13 C 1.53037 * 109.24188 * 54.85155 * 12 11 10 14 14 C 1.52997 * 109.46317 * 178.49010 * 13 12 11 15 15 C 1.50706 * 109.47248 * 295.07250 * 14 13 12 16 16 H 1.08000 * 119.99637 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00014 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00131 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99899 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46861 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47213 * 120.00418 * 19 17 15 22 22 H 1.48499 * 109.46707 * 240.00141 * 19 17 15 23 23 C 1.53042 * 109.54008 * 298.51564 * 13 12 11 24 24 C 1.46924 * 120.62538 * 185.85574 * 10 8 7 25 25 C 1.39430 * 120.14786 * 0.02580 * 7 6 5 26 26 C 1.38285 * 119.62170 * 359.97438 * 25 7 6 27 27 O 1.34143 * 124.83900 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47189 * 89.98204 * 1 2 3 29 29 H 1.09003 * 109.47156 * 209.97932 * 1 2 3 30 30 H 1.08993 * 109.47370 * 329.97664 * 1 2 3 31 31 H 1.07991 * 119.98225 * 0.02562 * 5 4 3 32 32 H 1.07992 * 119.79009 * 180.28016 * 6 5 4 33 33 H 1.09002 * 109.58663 * 246.19850 * 11 10 8 34 34 H 1.08996 * 109.59484 * 6.62787 * 11 10 8 35 35 H 1.08998 * 109.63295 * 294.85899 * 12 11 10 36 36 H 1.09000 * 109.43020 * 174.71928 * 12 11 10 37 37 H 1.09008 * 109.45087 * 58.52567 * 13 12 11 38 38 H 1.09002 * 109.46991 * 55.07048 * 14 13 12 39 39 H 1.09002 * 109.47494 * 175.06957 * 14 13 12 40 40 H 0.97005 * 120.00231 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.49013 * 301.41226 * 23 13 12 42 42 H 1.09004 * 109.52537 * 181.33535 * 23 13 12 43 43 H 1.08997 * 109.59381 * 353.37543 * 24 10 8 44 44 H 1.09002 * 109.58344 * 113.65521 * 24 10 8 45 45 H 1.07997 * 120.19224 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2498 1.0671 0.0000 4 6 3.5557 0.6930 0.0006 5 6 4.7619 1.4005 0.0004 6 6 5.9474 0.7279 0.0006 7 6 5.9680 -0.6729 0.0016 8 6 7.2581 -1.3904 0.0024 9 8 8.1695 -1.0017 0.7070 10 7 7.4257 -2.4763 -0.7781 11 6 6.3794 -2.8867 -1.7244 12 6 7.0073 -3.0178 -3.1203 13 6 8.2000 -3.9740 -3.0491 14 6 8.8062 -4.1377 -4.4443 15 6 7.8073 -4.8105 -5.3503 16 1 6.8373 -5.0934 -4.9689 17 6 8.1319 -5.0648 -6.6659 18 7 9.3132 -4.7207 -7.1301 19 14 6.8940 -5.8994 -7.7887 20 1 5.6500 -6.1840 -7.0292 21 1 6.5824 -5.0058 -8.9330 22 1 7.4658 -7.1724 -8.2962 23 6 9.2556 -3.4056 -2.0979 24 6 8.6556 -3.2756 -0.6944 25 6 4.7727 -1.3908 0.0018 26 6 3.5678 -0.7122 0.0015 27 8 2.2734 -1.1010 0.0005 28 1 -0.3633 0.0003 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8897 0.5142 31 1 4.7542 2.4804 0.0001 32 1 6.8765 1.2783 0.0050 33 1 5.9638 -3.8461 -1.4161 34 1 5.5908 -2.1346 -1.7461 35 1 7.3449 -2.0399 -3.4634 36 1 6.2661 -3.4119 -3.8157 37 1 7.8657 -4.9446 -2.6823 38 1 9.0598 -3.1573 -4.8475 39 1 9.7070 -4.7481 -4.3798 40 1 9.5417 -4.9000 -8.0557 41 1 9.5721 -2.4240 -2.4507 42 1 10.1152 -4.0752 -2.0656 43 1 9.3694 -2.7802 -0.0363 44 1 8.4222 -4.2652 -0.3014 45 1 4.7878 -2.4707 0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335500471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:22 Heat of formation + Delta-G solvation = -5.796730 kcal Electronic energy + Delta-G solvation = -27498.568435 eV Core-core repulsion = 23675.056777 eV Total energy + Delta-G solvation = -3823.511658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.59740 -40.45504 -38.10852 -37.20719 -35.21988 -34.11175 -32.44003 -31.95506 -31.36366 -30.47625 -28.82893 -27.89466 -24.98592 -23.73130 -23.35861 -22.89718 -21.98337 -21.64683 -20.15722 -19.10616 -18.20701 -17.38289 -17.24595 -17.07826 -16.33545 -15.85833 -15.17634 -14.96332 -14.54912 -14.49773 -14.21725 -13.96865 -13.73694 -13.67839 -13.46761 -13.21046 -13.03658 -12.87358 -12.75909 -12.63535 -12.28463 -11.91086 -11.83075 -11.47914 -11.23648 -11.02799 -10.86776 -10.81375 -10.74668 -10.49757 -10.16756 -9.96838 -9.68661 -9.34296 -9.14564 -9.00225 -8.72980 -8.43414 -8.37648 -6.02940 -4.05095 0.12035 0.89339 1.88227 2.07699 2.66904 2.98422 3.27680 3.35813 3.37910 3.38311 3.43751 4.12117 4.30058 4.42437 4.60920 4.64468 4.71068 4.87472 4.93641 5.01030 5.09201 5.19423 5.31326 5.32947 5.41213 5.45413 5.55725 5.58613 5.61668 5.70341 5.79283 5.87313 5.92035 5.96632 6.00306 6.22780 6.31695 6.33918 6.47398 6.61583 6.90693 6.94914 7.06795 7.24574 7.41259 7.63819 7.78001 7.96676 8.08688 8.38740 9.01613 9.58990 11.08328 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011831 B = 0.003122 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.009101 B = 8967.629721 C =10718.219472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.253 3.747 3 N -0.484 5.484 4 C 0.042 3.958 5 C -0.067 4.067 6 C -0.068 4.068 7 C -0.097 4.097 8 C 0.561 3.439 9 O -0.538 6.538 10 N -0.596 5.596 11 C 0.092 3.908 12 C -0.118 4.118 13 C -0.081 4.081 14 C 0.027 3.973 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.129 4.129 24 C 0.112 3.888 25 C -0.056 4.056 26 C 0.000 4.000 27 O -0.209 6.209 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.631 8.830 16.102 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.043 3.957 3 N -0.214 5.214 4 C -0.071 4.071 5 C -0.086 4.086 6 C -0.088 4.088 7 C -0.100 4.100 8 C 0.349 3.651 9 O -0.416 6.416 10 N -0.328 5.328 11 C -0.030 4.030 12 C -0.156 4.156 13 C -0.100 4.100 14 C -0.010 4.010 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.168 4.168 24 C -0.010 4.010 25 C -0.075 4.075 26 C -0.050 4.050 27 O -0.101 6.101 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.250 9.605 16.309 23.692 hybrid contribution -0.442 -1.250 -0.912 1.609 sum -14.692 8.355 15.398 22.864 Atomic orbital electron populations 1.20460 0.80670 1.05699 1.05447 1.26583 0.96746 0.78262 0.94142 1.70627 1.00904 1.28914 1.20963 1.20015 0.92253 0.91215 1.03572 1.19977 0.88169 1.00600 0.99855 1.20796 0.98596 0.92307 0.97075 1.19734 0.92333 0.94334 1.03603 1.18018 0.86712 0.80106 0.80251 1.90787 1.42056 1.66249 1.42518 1.48102 1.19542 1.26860 1.38258 1.22385 0.89991 1.00274 0.90365 1.21984 0.99311 1.00596 0.93723 1.21203 0.93834 0.96847 0.98077 1.19128 0.95913 0.97030 0.88908 1.21266 1.00604 1.38536 0.95051 0.92564 1.25021 0.95221 0.95918 0.98308 1.69970 1.20335 1.47678 1.15429 0.86598 0.81579 0.79303 0.80893 1.19765 1.21082 1.21070 1.22030 0.99171 1.01890 0.93661 1.21742 0.85672 0.94578 0.98964 1.20064 0.86667 1.00602 1.00155 1.20018 0.83723 0.94412 1.06889 1.84498 1.15165 1.36102 1.74340 0.88053 0.88705 0.87554 0.83949 0.83555 0.91182 0.89889 0.92121 0.89627 0.92286 0.96612 0.96534 0.93077 0.91924 0.90949 0.89406 0.91463 0.83700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.51 36.01 0.38 0.10 16 2 C 0.25 2.47 8.23 -13.05 -0.11 2.36 16 3 N -0.48 -5.81 11.33 -8.63 -0.10 -5.91 16 4 C 0.04 0.52 7.24 -84.62 -0.61 -0.09 16 5 C -0.07 -0.74 10.03 -39.68 -0.40 -1.14 16 6 C -0.07 -0.78 9.57 -39.59 -0.38 -1.16 16 7 C -0.10 -1.23 5.07 -104.93 -0.53 -1.77 16 8 C 0.56 8.34 7.28 -12.43 -0.09 8.25 16 9 O -0.54 -9.42 16.36 5.29 0.09 -9.34 16 10 N -0.60 -8.53 2.97 -173.70 -0.52 -9.04 16 11 C 0.09 1.24 4.96 -3.49 -0.02 1.23 16 12 C -0.12 -2.01 5.21 -26.38 -0.14 -2.15 16 13 C -0.08 -1.52 2.10 -90.58 -0.19 -1.71 16 14 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 15 C -0.52 -13.81 8.39 -34.44 -0.29 -14.10 16 16 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 19 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.13 -2.11 5.36 -26.61 -0.14 -2.26 16 24 C 0.11 1.61 6.44 -3.71 -0.02 1.58 16 25 C -0.06 -0.65 7.39 -39.12 -0.29 -0.94 16 26 C 0.00 -0.01 7.42 -38.70 -0.29 -0.29 16 27 O -0.21 -2.39 10.77 3.73 0.04 -2.35 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 34 H 0.08 1.03 4.82 -51.93 -0.25 0.78 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.55 6.91 -51.93 -0.36 1.19 16 37 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.15 1.50 6.74 -52.49 -0.35 1.15 16 LS Contribution 367.18 15.07 5.53 5.53 Total: -1.00 -33.27 367.18 -8.90 -42.18 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.33 Total: -1.40 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -3.34 Total: -10.08 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.12 Total: -40.61 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.13 Total: -11.68 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.27 -8.90 -42.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.381 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds