Wall clock time and date at job start Tue Mar 31 2020 15:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.33998 * 126.90244 * 2 1 4 4 O 1.34425 * 110.15626 * 180.25972 * 3 2 1 5 5 C 1.34932 * 110.88760 * 0.02562 * 4 3 2 6 6 C 1.38940 * 133.31381 * 180.02562 * 5 4 3 7 7 C 1.37742 * 120.05599 * 179.97438 * 6 5 4 8 8 C 1.39322 * 120.61889 * 0.02562 * 7 6 5 9 9 N 1.40147 * 119.93304 * 179.97438 * 8 7 6 10 10 C 1.34784 * 120.00024 * 334.90491 * 9 8 7 11 11 O 1.21585 * 120.00136 * 9.50076 * 10 9 8 12 12 N 1.34776 * 119.99912 * 189.50855 * 10 9 8 13 13 C 1.46933 * 120.62973 * 6.91939 * 12 10 9 14 14 C 1.52761 * 109.00372 * 233.58531 * 13 12 10 15 15 C 1.53042 * 109.38724 * 305.58922 * 14 13 12 16 16 C 1.50698 * 109.44816 * 181.25877 * 15 14 13 17 17 H 1.08000 * 119.99771 * 239.93217 * 16 15 14 18 18 C 1.37877 * 120.00325 * 59.93771 * 16 15 14 19 19 N 1.31511 * 120.00046 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99986 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47134 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46947 * 120.00146 * 20 18 16 23 23 H 1.48497 * 109.47400 * 239.99947 * 20 18 16 24 24 C 1.53036 * 109.53724 * 61.24166 * 15 14 13 25 25 C 1.46922 * 120.63084 * 187.20284 * 12 10 9 26 26 C 1.38310 * 120.12891 * 359.97253 * 8 7 6 27 27 C 1.39404 * 119.54147 * 0.02562 * 26 8 7 28 28 H 1.08992 * 109.47096 * 269.68424 * 1 2 3 29 29 H 1.09006 * 109.46649 * 29.68830 * 1 2 3 30 30 H 1.09001 * 109.46717 * 149.68515 * 1 2 3 31 31 H 1.07997 * 124.91780 * 0.24292 * 3 2 1 32 32 H 1.08009 * 119.97173 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.69158 * 179.97438 * 7 6 5 34 34 H 0.96994 * 120.00270 * 154.90925 * 9 8 7 35 35 H 1.08997 * 109.58393 * 353.41908 * 13 12 10 36 36 H 1.09000 * 109.58504 * 113.84982 * 13 12 10 37 37 H 1.09006 * 109.56300 * 185.55308 * 14 13 12 38 38 H 1.09005 * 109.35948 * 65.50400 * 14 13 12 39 39 H 1.09007 * 109.45644 * 301.22406 * 15 14 13 40 40 H 0.96996 * 120.00332 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.49708 * 178.68510 * 24 15 14 42 42 H 1.09000 * 109.52509 * 58.60213 * 24 15 14 43 43 H 1.09004 * 109.58652 * 246.15574 * 25 12 10 44 44 H 1.09002 * 109.58839 * 6.43610 * 25 12 10 45 45 H 1.07992 * 120.22864 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3117 1.0715 0.0000 4 8 3.5989 0.6842 -0.0057 5 6 3.6963 -0.6616 -0.0103 6 6 4.7735 -1.5392 -0.0164 7 6 4.5552 -2.8992 -0.0195 8 6 3.2590 -3.4099 -0.0172 9 7 3.0535 -4.7962 -0.0210 10 6 3.9988 -5.6162 -0.5215 11 8 5.0950 -5.1760 -0.8096 12 7 3.7290 -6.9242 -0.7029 13 6 2.3685 -7.4425 -0.5040 14 6 2.4201 -8.6108 0.4789 15 6 3.4229 -9.6525 -0.0223 16 6 3.4521 -10.8198 0.9303 17 1 4.3722 -11.0872 1.4287 18 6 2.3044 -11.5467 1.1655 19 7 1.1841 -11.2215 0.5581 20 14 2.3408 -12.9941 2.3458 21 1 3.7119 -13.1513 2.8939 22 1 1.3884 -12.7494 3.4585 23 1 1.9510 -14.2316 1.6236 24 6 4.8163 -9.0245 -0.1022 25 6 4.7908 -7.8600 -1.0971 26 6 2.1746 -2.5514 -0.0111 27 6 2.3885 -1.1739 -0.0079 28 1 -0.3633 -0.0057 1.0276 29 1 -0.3633 0.8928 -0.5090 30 1 -0.3633 -0.8872 -0.5187 31 1 1.9747 2.0976 0.0038 32 1 5.7828 -1.1547 -0.0187 33 1 5.3968 -3.5760 -0.0247 34 1 2.2310 -5.1656 0.3366 35 1 1.7329 -6.6546 -0.1000 36 1 1.9661 -7.7874 -1.4564 37 1 1.4324 -9.0651 0.5579 38 1 2.7326 -8.2462 1.4575 39 1 3.1233 -9.9984 -1.0116 40 1 0.3766 -11.7326 0.7239 41 1 5.5341 -9.7734 -0.4369 42 1 5.1068 -8.6562 0.8817 43 1 4.5899 -8.2395 -2.0990 44 1 5.7525 -7.3468 -1.0869 45 1 1.1691 -2.9455 -0.0089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335691781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:43 Heat of formation + Delta-G solvation = 6.395989 kcal Electronic energy + Delta-G solvation = -27326.443096 eV Core-core repulsion = 23503.460154 eV Total energy + Delta-G solvation = -3822.982942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.48359 -40.57299 -38.19994 -36.77307 -34.52068 -34.09490 -33.51730 -31.31354 -30.34497 -30.08431 -28.82975 -27.36290 -26.20657 -23.58903 -23.25535 -22.61961 -22.03571 -20.52441 -20.04188 -19.07825 -18.15958 -17.72838 -16.94757 -16.41060 -16.20595 -15.96680 -15.47289 -15.15178 -14.57701 -14.24086 -13.92512 -13.79491 -13.60593 -13.41700 -13.32616 -13.16808 -13.03194 -12.72565 -12.67774 -12.57919 -12.21160 -12.07814 -11.67520 -11.38238 -11.05530 -11.01104 -10.67293 -10.45760 -10.29781 -10.20351 -9.97304 -9.73576 -9.53739 -9.24742 -9.02379 -8.45726 -8.27600 -8.18622 -7.76638 -6.09551 -4.15503 0.85376 1.31140 2.22796 2.66598 2.83184 3.22319 3.23468 3.32221 3.36198 3.75996 3.96940 4.32598 4.36122 4.51710 4.75429 4.97149 5.16825 5.20083 5.27644 5.33465 5.37626 5.45870 5.46540 5.63103 5.67015 5.82959 5.84077 5.96552 5.98410 6.08222 6.10303 6.16875 6.22480 6.34832 6.36109 6.44606 6.58216 6.77584 6.82407 6.90043 7.03112 7.09990 7.14625 7.29122 7.60052 7.84005 7.95805 8.05867 8.33366 8.66260 8.88294 9.50153 10.96069 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022482 B = 0.002433 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.132414 B =11506.541237 C =12310.492296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.182 4.182 3 C 0.000 4.000 4 O -0.196 6.196 5 C 0.028 3.972 6 C -0.089 4.089 7 C -0.109 4.109 8 C 0.167 3.833 9 N -0.685 5.685 10 C 0.707 3.293 11 O -0.585 6.585 12 N -0.611 5.611 13 C 0.107 3.893 14 C -0.126 4.126 15 C 0.049 3.951 16 C -0.511 4.511 17 H 0.056 0.944 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.125 4.125 25 C 0.129 3.871 26 C -0.118 4.118 27 C -0.106 4.106 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.203 0.797 32 H 0.133 0.867 33 H 0.176 0.824 34 H 0.410 0.590 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.039 0.961 39 H 0.028 0.972 40 H 0.260 0.740 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 20.639 -1.779 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.184 4.184 3 C -0.065 4.065 4 O -0.098 6.098 5 C -0.019 4.019 6 C -0.108 4.108 7 C -0.128 4.128 8 C 0.070 3.930 9 N -0.333 5.333 10 C 0.410 3.590 11 O -0.465 6.465 12 N -0.346 5.346 13 C -0.015 4.015 14 C -0.164 4.164 15 C 0.030 3.970 16 C -0.549 4.549 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.163 4.163 25 C 0.006 3.994 26 C -0.139 4.139 27 C -0.108 4.108 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.220 0.780 32 H 0.151 0.849 33 H 0.193 0.807 34 H 0.248 0.752 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.499 20.914 -2.047 21.020 hybrid contribution -0.887 -1.040 0.867 1.619 sum -1.385 19.874 -1.180 19.957 Atomic orbital electron populations 1.20136 0.88705 1.02725 1.02205 1.21096 0.96608 0.91148 1.09554 1.23656 0.80069 0.99433 1.03385 1.83998 1.27898 1.21199 1.76705 1.19649 0.95539 0.81071 1.05661 1.19910 0.96566 0.90716 1.03651 1.21856 0.97931 0.94234 0.98817 1.17407 0.93574 0.81957 1.00047 1.42832 1.22570 1.04045 1.63858 1.15819 0.83583 0.81349 0.78293 1.90712 1.22698 1.74430 1.58658 1.47518 1.11580 1.05247 1.70251 1.21898 0.80938 0.97433 1.01210 1.21983 1.05428 0.93577 0.95459 1.18630 0.88686 0.92527 0.97146 1.21241 0.95540 1.12516 1.25609 0.92589 1.24960 0.95610 0.97408 0.96024 1.69831 1.00131 1.40192 1.42975 0.86557 0.78086 0.82580 0.80913 1.19816 1.21070 1.21027 1.22045 1.01103 0.95494 0.97703 1.21655 0.89765 0.89826 0.98118 1.19989 0.97970 0.90468 1.05516 1.19413 0.92505 0.93267 1.05583 0.91307 0.91483 0.91355 0.78006 0.84891 0.80686 0.75184 0.92537 0.91489 0.87609 0.94195 0.95351 0.93003 0.91883 0.92897 0.92055 0.90094 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.43 36.01 0.38 -0.21 16 2 C -0.18 -1.88 6.35 -102.65 -0.65 -2.53 16 3 C 0.00 0.00 11.89 29.24 0.35 0.34 16 4 O -0.20 -2.38 10.59 3.62 0.04 -2.34 16 5 C 0.03 0.37 7.41 -38.49 -0.29 0.09 16 6 C -0.09 -1.16 10.05 -39.50 -0.40 -1.56 16 7 C -0.11 -1.58 8.84 -39.36 -0.35 -1.92 16 8 C 0.17 2.36 6.47 -83.63 -0.54 1.81 16 9 N -0.68 -9.79 5.22 -14.20 -0.07 -9.87 16 10 C 0.71 12.06 8.19 -86.91 -0.71 11.35 16 11 O -0.59 -11.12 12.60 5.29 0.07 -11.05 16 12 N -0.61 -10.46 2.98 -178.76 -0.53 -10.99 16 13 C 0.11 1.79 6.39 -3.93 -0.03 1.77 16 14 C -0.13 -2.61 5.14 -26.83 -0.14 -2.75 16 15 C 0.05 1.11 2.07 -91.73 -0.19 0.92 16 16 C -0.51 -13.19 8.56 -34.44 -0.29 -13.48 16 17 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 19 N -0.89 -23.75 11.31 55.43 0.63 -23.13 16 20 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.13 -2.44 5.30 -26.61 -0.14 -2.58 16 25 C 0.13 2.24 6.41 -3.71 -0.02 2.21 16 26 C -0.12 -1.48 9.99 -39.12 -0.39 -1.87 16 27 C -0.11 -1.36 6.38 -105.17 -0.67 -2.03 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.20 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.18 2.80 5.29 -52.50 -0.28 2.52 16 34 H 0.41 5.03 6.38 -40.82 -0.26 4.77 16 35 H 0.06 0.78 5.64 -51.93 -0.29 0.48 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.11 2.46 6.03 -51.93 -0.31 2.15 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 40 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.39 7.05 -51.93 -0.37 1.02 16 45 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 362.62 15.07 5.46 5.46 Total: -1.00 -29.57 362.62 -9.74 -39.31 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.13 Total: 6.15 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -4.18 Total: -8.95 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.02 Total: -43.98 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.11 Total: -13.39 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.57 -9.74 -39.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335691781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.707 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds