Wall clock time and date at job start Tue Mar 31 2020 15:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.33998 * 126.90244 * 2 1 4 4 O 1.34425 * 110.15626 * 180.25972 * 3 2 1 5 5 C 1.34932 * 110.88760 * 0.02562 * 4 3 2 6 6 C 1.38940 * 133.31381 * 180.02562 * 5 4 3 7 7 C 1.37742 * 120.05599 * 179.97438 * 6 5 4 8 8 C 1.39322 * 120.61889 * 0.02562 * 7 6 5 9 9 N 1.40147 * 119.93304 * 179.97438 * 8 7 6 10 10 C 1.34784 * 120.00024 * 334.90491 * 9 8 7 11 11 O 1.21585 * 120.00136 * 9.50076 * 10 9 8 12 12 N 1.34776 * 119.99912 * 189.50855 * 10 9 8 13 13 C 1.46933 * 120.62973 * 6.91939 * 12 10 9 14 14 C 1.52761 * 109.00372 * 233.58531 * 13 12 10 15 15 C 1.53042 * 109.38724 * 305.58922 * 14 13 12 16 16 C 1.50698 * 109.44816 * 181.25877 * 15 14 13 17 17 H 1.08000 * 119.99771 * 239.93217 * 16 15 14 18 18 C 1.37877 * 120.00325 * 59.93771 * 16 15 14 19 19 N 1.31511 * 120.00046 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99986 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47134 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46947 * 120.00146 * 20 18 16 23 23 H 1.48497 * 109.47400 * 239.99947 * 20 18 16 24 24 C 1.53036 * 109.53724 * 61.24166 * 15 14 13 25 25 C 1.46922 * 120.63084 * 187.20284 * 12 10 9 26 26 C 1.38310 * 120.12891 * 359.97253 * 8 7 6 27 27 C 1.39404 * 119.54147 * 0.02562 * 26 8 7 28 28 H 1.08992 * 109.47096 * 269.68424 * 1 2 3 29 29 H 1.09006 * 109.46649 * 29.68830 * 1 2 3 30 30 H 1.09001 * 109.46717 * 149.68515 * 1 2 3 31 31 H 1.07997 * 124.91780 * 0.24292 * 3 2 1 32 32 H 1.08009 * 119.97173 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.69158 * 179.97438 * 7 6 5 34 34 H 0.96994 * 120.00270 * 154.90925 * 9 8 7 35 35 H 1.08997 * 109.58393 * 353.41908 * 13 12 10 36 36 H 1.09000 * 109.58504 * 113.84982 * 13 12 10 37 37 H 1.09006 * 109.56300 * 185.55308 * 14 13 12 38 38 H 1.09005 * 109.35948 * 65.50400 * 14 13 12 39 39 H 1.09007 * 109.45644 * 301.22406 * 15 14 13 40 40 H 0.96996 * 120.00332 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.49708 * 178.68510 * 24 15 14 42 42 H 1.09000 * 109.52509 * 58.60213 * 24 15 14 43 43 H 1.09004 * 109.58652 * 246.15574 * 25 12 10 44 44 H 1.09002 * 109.58839 * 6.43610 * 25 12 10 45 45 H 1.07992 * 120.22864 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3117 1.0715 0.0000 4 8 3.5989 0.6842 -0.0057 5 6 3.6963 -0.6616 -0.0103 6 6 4.7735 -1.5392 -0.0164 7 6 4.5552 -2.8992 -0.0195 8 6 3.2590 -3.4099 -0.0172 9 7 3.0535 -4.7962 -0.0210 10 6 3.9988 -5.6162 -0.5215 11 8 5.0950 -5.1760 -0.8096 12 7 3.7290 -6.9242 -0.7029 13 6 2.3685 -7.4425 -0.5040 14 6 2.4201 -8.6108 0.4789 15 6 3.4229 -9.6525 -0.0223 16 6 3.4521 -10.8198 0.9303 17 1 4.3722 -11.0872 1.4287 18 6 2.3044 -11.5467 1.1655 19 7 1.1841 -11.2215 0.5581 20 14 2.3408 -12.9941 2.3458 21 1 3.7119 -13.1513 2.8939 22 1 1.3884 -12.7494 3.4585 23 1 1.9510 -14.2316 1.6236 24 6 4.8163 -9.0245 -0.1022 25 6 4.7908 -7.8600 -1.0971 26 6 2.1746 -2.5514 -0.0111 27 6 2.3885 -1.1739 -0.0079 28 1 -0.3633 -0.0057 1.0276 29 1 -0.3633 0.8928 -0.5090 30 1 -0.3633 -0.8872 -0.5187 31 1 1.9747 2.0976 0.0038 32 1 5.7828 -1.1547 -0.0187 33 1 5.3968 -3.5760 -0.0247 34 1 2.2310 -5.1656 0.3366 35 1 1.7329 -6.6546 -0.1000 36 1 1.9661 -7.7874 -1.4564 37 1 1.4324 -9.0651 0.5579 38 1 2.7326 -8.2462 1.4575 39 1 3.1233 -9.9984 -1.0116 40 1 0.3766 -11.7326 0.7239 41 1 5.5341 -9.7734 -0.4369 42 1 5.1068 -8.6562 0.8817 43 1 4.5899 -8.2395 -2.0990 44 1 5.7525 -7.3468 -1.0869 45 1 1.1691 -2.9455 -0.0089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335691781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:42 Heat of formation + Delta-G solvation = -8.464560 kcal Electronic energy + Delta-G solvation = -27327.087498 eV Core-core repulsion = 23503.460154 eV Total energy + Delta-G solvation = -3823.627344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.36143 -41.85397 -39.43435 -38.14580 -35.74803 -35.27787 -34.82232 -32.98962 -31.77138 -31.12680 -29.92512 -28.04028 -27.90475 -25.07788 -24.29111 -24.05466 -23.33341 -21.78785 -21.05578 -20.43585 -19.47357 -18.85227 -18.31863 -17.82856 -17.13510 -17.02109 -16.82241 -16.56224 -16.29842 -15.31707 -15.15645 -14.95033 -14.80396 -14.69982 -14.38171 -14.32652 -14.17237 -14.08220 -13.94922 -13.45449 -13.38527 -13.23111 -13.10211 -12.82508 -12.76113 -12.43887 -12.15921 -11.98430 -11.94757 -11.46959 -11.42617 -11.00584 -10.98227 -10.81949 -10.73638 -10.39744 -9.66521 -9.10478 -8.85359 -8.07906 -6.20293 -0.06495 0.27320 1.40066 1.42341 1.44190 1.48156 1.53506 1.93676 1.95428 2.44367 2.69051 2.74714 3.19050 3.50746 3.67509 3.97216 4.02403 4.15206 4.20415 4.31198 4.36742 4.40519 4.45239 4.47306 4.58824 4.67329 4.70665 4.86743 4.89080 4.93048 4.97431 5.05909 5.12686 5.16021 5.20576 5.20964 5.29061 5.34982 5.43548 5.52406 5.61811 5.66173 5.80022 5.93471 6.00291 6.14077 6.22465 6.40167 6.78585 6.89407 7.35776 7.47496 8.95585 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022482 B = 0.002433 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.132414 B =11506.541237 C =12310.492296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.197 4.197 3 C 0.008 3.992 4 O -0.207 6.207 5 C 0.010 3.990 6 C -0.090 4.090 7 C -0.127 4.127 8 C 0.148 3.852 9 N -0.673 5.673 10 C 0.705 3.295 11 O -0.607 6.607 12 N -0.614 5.614 13 C 0.118 3.882 14 C -0.116 4.116 15 C 0.045 3.955 16 C -0.532 4.532 17 H 0.047 0.953 18 C 0.018 3.982 19 N -0.911 5.911 20 Si 0.946 3.054 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.282 1.282 24 C -0.115 4.115 25 C 0.135 3.865 26 C -0.112 4.112 27 C -0.120 4.120 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.248 0.752 32 H 0.148 0.852 33 H 0.158 0.842 34 H 0.419 0.581 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.030 0.970 39 H 0.005 0.995 40 H 0.261 0.739 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 22.709 -1.667 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.198 4.198 3 C -0.056 4.056 4 O -0.109 6.109 5 C -0.037 4.037 6 C -0.109 4.109 7 C -0.147 4.147 8 C 0.053 3.947 9 N -0.322 5.322 10 C 0.408 3.592 11 O -0.488 6.488 12 N -0.349 5.349 13 C -0.004 4.004 14 C -0.154 4.154 15 C 0.026 3.974 16 C -0.570 4.570 17 H 0.065 0.935 18 C -0.181 4.181 19 N -0.551 5.551 20 Si 0.773 3.227 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.153 4.153 25 C 0.013 3.987 26 C -0.133 4.133 27 C -0.122 4.122 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.264 0.736 32 H 0.166 0.834 33 H 0.175 0.825 34 H 0.259 0.741 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.023 0.977 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.758 23.003 -1.926 23.151 hybrid contribution -0.508 -1.567 0.841 1.849 sum -2.266 21.437 -1.086 21.583 Atomic orbital electron populations 1.20212 0.86557 1.03758 1.03010 1.21489 0.98109 0.90192 1.10050 1.24577 0.78675 1.01220 1.01103 1.84006 1.29665 1.20455 1.76764 1.19815 0.95898 0.81861 1.06154 1.20016 0.97566 0.90323 1.02978 1.21701 0.97727 0.94685 1.00583 1.17536 0.94002 0.81824 1.01385 1.42640 1.22287 1.04021 1.63291 1.15910 0.83749 0.81321 0.78236 1.90715 1.23755 1.74775 1.59531 1.47481 1.11492 1.05399 1.70495 1.21758 0.81387 0.96949 1.00325 1.21732 1.03220 0.94453 0.96041 1.18612 0.91023 0.92599 0.95161 1.21571 0.95285 1.13900 1.26236 0.93498 1.25600 0.95459 0.99574 0.97430 1.69934 1.00416 1.40935 1.43779 0.85686 0.77933 0.79908 0.79181 1.19773 1.20679 1.20778 1.21885 0.99210 0.96266 0.97928 1.21541 0.90310 0.89092 0.97805 1.20169 0.98445 0.90368 1.04361 1.19850 0.93214 0.94062 1.05041 0.90526 0.89242 0.91610 0.73603 0.83417 0.82511 0.74081 0.89196 0.91193 0.90031 0.95159 0.97694 0.92946 0.91540 0.93849 0.91074 0.89692 0.83277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.43 71.24 0.74 -0.15 16 2 C -0.20 -3.51 6.35 -18.59 -0.12 -3.63 16 3 C 0.01 0.13 11.89 66.85 0.79 0.92 16 4 O -0.21 -4.63 10.59 -9.95 -0.11 -4.73 16 5 C 0.01 0.26 7.41 22.98 0.17 0.43 16 6 C -0.09 -2.33 10.05 22.32 0.22 -2.11 16 7 C -0.13 -3.73 8.84 22.41 0.20 -3.53 16 8 C 0.15 4.10 6.47 38.09 0.25 4.35 16 9 N -0.67 -18.62 5.22 -317.08 -1.66 -20.28 16 10 C 0.71 23.69 8.19 179.05 1.47 25.16 16 11 O -0.61 -23.13 12.60 -3.98 -0.05 -23.18 16 12 N -0.61 -20.60 2.98 -837.72 -2.50 -23.10 16 13 C 0.12 3.83 6.39 86.22 0.55 4.38 16 14 C -0.12 -4.84 5.14 30.53 0.16 -4.68 16 15 C 0.04 2.06 2.07 -11.51 -0.02 2.04 16 16 C -0.53 -27.94 8.56 25.60 0.22 -27.72 16 17 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 18 C 0.02 0.96 5.30 84.66 0.45 1.41 16 19 N -0.91 -49.01 11.31 21.45 0.24 -48.77 16 20 Si 0.95 42.11 29.54 68.60 2.03 44.14 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 C -0.11 -4.51 5.30 30.67 0.16 -4.34 16 25 C 0.14 4.66 6.41 86.36 0.55 5.21 16 26 C -0.11 -2.66 9.99 22.57 0.23 -2.44 16 27 C -0.12 -2.89 6.38 -20.22 -0.13 -3.01 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.25 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 33 H 0.16 5.19 5.29 -3.12 -0.02 5.17 16 34 H 0.42 9.59 6.38 -92.71 -0.59 9.00 16 35 H 0.09 2.30 5.64 -2.39 -0.01 2.29 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.08 3.85 6.03 -2.38 -0.01 3.84 16 38 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 40 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 41 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 42 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 44 H 0.08 2.89 7.05 -2.39 -0.02 2.87 16 45 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -64.69 362.62 4.28 -60.40 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.43 Total: 23.22 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 5.89 Total: -7.70 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -3.91 Total: -92.14 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.16 Total: -27.91 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -64.69 4.28 -60.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335691781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.939 kcal (2) G-P(sol) polarization free energy of solvation -64.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds