Wall clock time and date at job start Tue Mar 31 2020 15:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42893 * 113.41250 * 2 1 4 4 C 1.53499 * 114.20072 * 226.80347 * 2 1 3 5 5 N 1.47065 * 87.98290 * 220.34176 * 4 2 1 6 6 C 1.34774 * 136.06053 * 207.08898 * 5 4 2 7 7 O 1.21676 * 119.99889 * 359.97438 * 6 5 4 8 8 C 1.46913 * 120.00577 * 180.02562 * 6 5 4 9 9 C 1.36378 * 126.76397 * 359.97387 * 8 6 5 10 10 N 1.35467 * 109.76715 * 180.02562 * 9 8 6 11 11 C 1.46500 * 124.78709 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47473 * 265.02473 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 C 1.37962 * 110.42929 * 0.24213 * 10 9 8 22 22 C 1.39121 * 133.18835 * 179.76301 * 21 10 9 23 23 C 1.37774 * 119.92774 * 179.97438 * 22 21 10 24 24 C 1.38752 * 120.63112 * 359.97438 * 23 22 21 25 25 C 1.37760 * 120.30720 * 359.65214 * 24 23 22 26 26 C 1.39279 * 119.66554 * 0.53382 * 25 24 23 27 27 C 1.47064 * 87.88628 * 27.34292 * 5 4 2 28 28 H 1.09002 * 109.47495 * 193.19983 * 1 2 3 29 29 H 1.09010 * 109.46818 * 313.19488 * 1 2 3 30 30 H 1.08994 * 109.47354 * 73.19484 * 1 2 3 31 31 H 0.96703 * 114.00270 * 46.80019 * 3 2 1 32 32 H 1.09007 * 113.46758 * 105.56585 * 4 2 1 33 33 H 1.08996 * 113.47007 * 335.12067 * 4 2 1 34 34 H 1.08003 * 125.11454 * 359.97438 * 9 8 6 35 35 H 1.09002 * 109.47129 * 145.02216 * 11 10 9 36 36 H 1.08998 * 109.46845 * 25.03022 * 11 10 9 37 37 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 38 38 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 39 39 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 40 40 H 1.08000 * 120.03900 * 0.02562 * 22 21 10 41 41 H 1.07995 * 119.67807 * 179.97438 * 23 22 21 42 42 H 1.08006 * 119.84248 * 180.02562 * 24 23 22 43 43 H 1.07993 * 120.16450 * 179.97438 * 25 24 23 44 44 H 1.08999 * 113.46623 * 87.43452 * 27 5 4 45 45 H 1.08996 * 113.47153 * 217.87592 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0978 1.3113 0.0000 4 6 2.1593 -0.9584 -1.0207 5 7 3.1598 -1.3053 -0.0002 6 6 4.4330 -1.7473 -0.0003 7 8 5.0074 -1.9477 -1.0540 8 6 5.1271 -1.9884 1.2719 9 6 4.6191 -1.8115 2.5252 10 7 5.5552 -2.1362 3.4490 11 6 5.3580 -2.0666 4.8990 12 6 5.8779 -0.7256 5.4207 13 6 5.6744 -0.6538 6.9122 14 1 5.2201 -1.4820 7.4357 15 6 6.0693 0.4688 7.6086 16 7 5.8921 0.5312 8.9102 17 14 6.8558 1.9009 6.7032 18 1 5.8002 2.8487 6.2640 19 1 7.8023 2.5996 7.6094 20 1 7.5900 1.3932 5.5165 21 6 6.7226 -2.5359 2.8318 22 6 7.9578 -2.9577 3.3130 23 6 8.9585 -3.3013 2.4305 24 6 8.7477 -3.2317 1.0608 25 6 7.5289 -2.8238 0.5648 26 6 6.5098 -2.4697 1.4457 27 6 2.1576 -0.9638 1.0204 28 1 -0.3634 -1.0005 0.2347 29 1 -0.3633 0.7035 0.7493 30 1 -0.3634 0.2971 -0.9837 31 1 1.6992 1.9126 0.6440 32 1 2.5820 -0.4519 -1.8885 33 1 1.5099 -1.7905 -1.2925 34 1 3.6210 -1.4641 2.7476 35 1 5.9029 -2.8793 5.3792 36 1 4.2958 -2.1576 5.1259 37 1 5.3330 0.0871 4.9405 38 1 6.9402 -0.6347 5.1938 39 1 6.1696 1.3211 9.4001 40 1 8.1320 -3.0166 4.3773 41 1 9.9160 -3.6278 2.8084 42 1 9.5409 -3.5045 0.3804 43 1 7.3675 -2.7701 -0.5016 44 1 1.5078 -1.7974 1.2866 45 1 2.5787 -0.4621 1.8916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338607832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:39 Heat of formation + Delta-G solvation = 18.420558 kcal Electronic energy + Delta-G solvation = -27724.813784 eV Core-core repulsion = 23902.352266 eV Total energy + Delta-G solvation = -3822.461518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40185 -40.57235 -37.95680 -36.96402 -35.44635 -34.15408 -32.45417 -31.19330 -30.64912 -29.10727 -29.01775 -26.99900 -26.40589 -25.10759 -22.73036 -22.15216 -21.56868 -20.75344 -20.12087 -19.06017 -17.41767 -17.21557 -16.85780 -16.38140 -15.91403 -15.56852 -15.34869 -15.09974 -14.93783 -14.70744 -14.18818 -14.12318 -13.74645 -13.65850 -13.31491 -13.12117 -13.03067 -12.77633 -12.68528 -12.57436 -12.28854 -12.00816 -11.98030 -11.49465 -11.34871 -11.21801 -11.11000 -10.74768 -10.44757 -10.31116 -10.25593 -10.01766 -9.67623 -9.51981 -9.34299 -8.79016 -8.75159 -8.03331 -7.42630 -6.26048 -4.28220 1.20754 1.78875 2.24196 2.72408 3.06008 3.17695 3.27080 3.32252 3.51152 3.60289 3.89657 4.18463 4.27458 4.44958 4.56142 4.72084 4.79214 4.91026 5.05645 5.07511 5.14139 5.19753 5.24578 5.28999 5.34350 5.40488 5.48798 5.49245 5.61670 5.65550 5.75885 5.79650 5.83347 5.93437 6.04461 6.13250 6.30613 6.64976 6.80177 6.85092 6.88351 6.89977 7.07057 7.30589 7.36125 7.42129 7.56657 7.71173 8.23917 8.37653 8.74130 9.34553 10.86206 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008705 B = 0.004398 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.738731 B = 6365.043066 C = 8741.748336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.090 3.910 3 O -0.530 6.530 4 C 0.118 3.882 5 N -0.642 5.642 6 C 0.629 3.371 7 O -0.547 6.547 8 C -0.247 4.247 9 C 0.117 3.883 10 N -0.455 5.455 11 C 0.111 3.889 12 C -0.024 4.024 13 C -0.530 4.530 14 H 0.076 0.924 15 C 0.076 3.924 16 N -0.894 5.894 17 Si 0.876 3.124 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.265 1.265 21 C 0.091 3.909 22 C -0.115 4.115 23 C -0.108 4.108 24 C -0.145 4.145 25 C -0.072 4.072 26 C -0.062 4.062 27 C 0.065 3.935 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.383 0.617 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.173 0.827 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.018 0.982 38 H 0.025 0.975 39 H 0.267 0.733 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.096 0.904 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 -4.195 -15.939 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.048 3.952 3 O -0.336 6.336 4 C -0.005 4.005 5 N -0.377 5.377 6 C 0.423 3.577 7 O -0.425 6.425 8 C -0.258 4.258 9 C -0.018 4.018 10 N -0.133 5.133 11 C -0.009 4.009 12 C -0.062 4.062 13 C -0.569 4.569 14 H 0.094 0.906 15 C -0.127 4.127 16 N -0.532 5.532 17 Si 0.703 3.297 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.189 1.189 21 C -0.014 4.014 22 C -0.135 4.135 23 C -0.128 4.128 24 C -0.164 4.164 25 C -0.091 4.091 26 C -0.067 4.067 27 C -0.059 4.059 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.232 0.768 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.190 0.810 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.036 0.964 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.145 0.855 44 H 0.113 0.887 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.107 -4.532 -16.431 18.875 hybrid contribution -0.045 1.155 0.410 1.226 sum -8.152 -3.377 -16.022 18.291 Atomic orbital electron populations 1.22206 0.93180 1.03590 1.03438 1.22456 0.92006 0.83936 0.96809 1.86579 1.63529 1.20628 1.62878 1.22990 0.88301 0.95213 0.93979 1.49110 1.10288 1.68007 1.10314 1.16699 0.78211 0.74717 0.88073 1.90743 1.65304 1.53278 1.33200 1.19653 0.95641 1.19182 0.91282 1.22377 0.94853 0.96868 0.87664 1.44405 1.09483 1.51610 1.07762 1.22233 1.02894 1.02069 0.73670 1.19936 0.97131 0.91396 0.97726 1.20834 1.42227 1.04253 0.89549 0.90579 1.24928 0.94835 0.98249 0.94678 1.69885 1.46975 1.29536 1.06773 0.86831 0.79960 0.82734 0.80188 1.20086 1.20986 1.18934 1.18289 0.88819 1.03064 0.91246 1.20163 0.90561 1.02580 1.00187 1.20773 0.98267 1.00754 0.92986 1.20896 0.97031 1.03235 0.95202 1.20573 0.91507 0.97573 0.99421 1.18688 0.92948 1.03173 0.91844 1.24019 0.89553 0.97803 0.94540 0.90652 0.91304 0.91030 0.76817 0.89695 0.88553 0.81035 0.89493 0.89368 0.96391 0.95661 0.92347 0.85694 0.85855 0.86188 0.85471 0.88651 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 9.54 37.16 0.35 -0.42 16 2 C 0.09 0.72 2.04 -89.97 -0.18 0.54 16 3 O -0.53 -5.17 13.57 -35.23 -0.48 -5.65 16 4 C 0.12 1.18 8.04 -8.51 -0.07 1.11 16 5 N -0.64 -8.42 3.69 -186.52 -0.69 -9.11 16 6 C 0.63 10.82 8.05 -12.75 -0.10 10.71 16 7 O -0.55 -11.01 16.94 5.21 0.09 -10.92 16 8 C -0.25 -4.26 6.27 -103.31 -0.65 -4.90 16 9 C 0.12 1.82 10.45 -16.62 -0.17 1.65 16 10 N -0.46 -7.83 2.74 -114.22 -0.31 -8.14 16 11 C 0.11 1.96 5.89 -4.04 -0.02 1.94 16 12 C -0.02 -0.53 4.36 -27.88 -0.12 -0.65 16 13 C -0.53 -13.88 9.66 -34.44 -0.33 -14.22 16 14 H 0.08 2.10 7.99 -52.49 -0.42 1.68 16 15 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 16 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 17 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 21 C 0.09 1.62 6.79 -83.97 -0.57 1.05 16 22 C -0.11 -1.88 9.97 -39.42 -0.39 -2.27 16 23 C -0.11 -1.56 10.01 -39.56 -0.40 -1.95 16 24 C -0.14 -2.09 10.03 -39.57 -0.40 -2.48 16 25 C -0.07 -1.21 9.85 -39.37 -0.39 -1.59 16 26 C -0.06 -1.13 6.27 -104.95 -0.66 -1.79 16 27 C 0.06 0.58 6.55 -8.37 -0.05 0.52 16 28 H 0.07 0.27 7.89 -51.93 -0.41 -0.14 16 29 H 0.07 0.26 8.14 -51.92 -0.42 -0.17 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.38 2.11 9.04 45.56 0.41 2.53 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.17 2.08 5.05 -52.48 -0.27 1.82 16 35 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 37 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 38 H 0.03 0.59 7.20 -51.93 -0.37 0.21 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 41 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 43 H 0.13 2.12 7.45 -52.49 -0.39 1.73 16 44 H 0.10 0.62 7.93 -51.93 -0.41 0.21 16 45 H 0.09 0.79 6.16 -51.93 -0.32 0.47 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -35.24 375.89 -9.42 -44.65 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.54 Total: 3.23 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -4.25 Total: -10.75 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.23 Total: -42.55 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.39 Total: -16.56 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.24 -9.42 -44.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338607832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.075 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds