Wall clock time and date at job start Tue Mar 31 2020 15:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42893 * 113.41250 * 2 1 4 4 C 1.53499 * 114.20072 * 226.80347 * 2 1 3 5 5 N 1.47065 * 87.98290 * 220.34176 * 4 2 1 6 6 C 1.34774 * 136.06053 * 207.08898 * 5 4 2 7 7 O 1.21676 * 119.99889 * 359.97438 * 6 5 4 8 8 C 1.46913 * 120.00577 * 180.02562 * 6 5 4 9 9 C 1.36378 * 126.76397 * 359.97387 * 8 6 5 10 10 N 1.35467 * 109.76715 * 180.02562 * 9 8 6 11 11 C 1.46500 * 124.78709 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47473 * 265.02473 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 C 1.37962 * 110.42929 * 0.24213 * 10 9 8 22 22 C 1.39121 * 133.18835 * 179.76301 * 21 10 9 23 23 C 1.37774 * 119.92774 * 179.97438 * 22 21 10 24 24 C 1.38752 * 120.63112 * 359.97438 * 23 22 21 25 25 C 1.37760 * 120.30720 * 359.65214 * 24 23 22 26 26 C 1.39279 * 119.66554 * 0.53382 * 25 24 23 27 27 C 1.47064 * 87.88628 * 27.34292 * 5 4 2 28 28 H 1.09002 * 109.47495 * 193.19983 * 1 2 3 29 29 H 1.09010 * 109.46818 * 313.19488 * 1 2 3 30 30 H 1.08994 * 109.47354 * 73.19484 * 1 2 3 31 31 H 0.96703 * 114.00270 * 46.80019 * 3 2 1 32 32 H 1.09007 * 113.46758 * 105.56585 * 4 2 1 33 33 H 1.08996 * 113.47007 * 335.12067 * 4 2 1 34 34 H 1.08003 * 125.11454 * 359.97438 * 9 8 6 35 35 H 1.09002 * 109.47129 * 145.02216 * 11 10 9 36 36 H 1.08998 * 109.46845 * 25.03022 * 11 10 9 37 37 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 38 38 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 39 39 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 40 40 H 1.08000 * 120.03900 * 0.02562 * 22 21 10 41 41 H 1.07995 * 119.67807 * 179.97438 * 23 22 21 42 42 H 1.08006 * 119.84248 * 180.02562 * 24 23 22 43 43 H 1.07993 * 120.16450 * 179.97438 * 25 24 23 44 44 H 1.08999 * 113.46623 * 87.43452 * 27 5 4 45 45 H 1.08996 * 113.47153 * 217.87592 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0978 1.3113 0.0000 4 6 2.1593 -0.9584 -1.0207 5 7 3.1598 -1.3053 -0.0002 6 6 4.4330 -1.7473 -0.0003 7 8 5.0074 -1.9477 -1.0540 8 6 5.1271 -1.9884 1.2719 9 6 4.6191 -1.8115 2.5252 10 7 5.5552 -2.1362 3.4490 11 6 5.3580 -2.0666 4.8990 12 6 5.8779 -0.7256 5.4207 13 6 5.6744 -0.6538 6.9122 14 1 5.2201 -1.4820 7.4357 15 6 6.0693 0.4688 7.6086 16 7 5.8921 0.5312 8.9102 17 14 6.8558 1.9009 6.7032 18 1 5.8002 2.8487 6.2640 19 1 7.8023 2.5996 7.6094 20 1 7.5900 1.3932 5.5165 21 6 6.7226 -2.5359 2.8318 22 6 7.9578 -2.9577 3.3130 23 6 8.9585 -3.3013 2.4305 24 6 8.7477 -3.2317 1.0608 25 6 7.5289 -2.8238 0.5648 26 6 6.5098 -2.4697 1.4457 27 6 2.1576 -0.9638 1.0204 28 1 -0.3634 -1.0005 0.2347 29 1 -0.3633 0.7035 0.7493 30 1 -0.3634 0.2971 -0.9837 31 1 1.6992 1.9126 0.6440 32 1 2.5820 -0.4519 -1.8885 33 1 1.5099 -1.7905 -1.2925 34 1 3.6210 -1.4641 2.7476 35 1 5.9029 -2.8793 5.3792 36 1 4.2958 -2.1576 5.1259 37 1 5.3330 0.0871 4.9405 38 1 6.9402 -0.6347 5.1938 39 1 6.1696 1.3211 9.4001 40 1 8.1320 -3.0166 4.3773 41 1 9.9160 -3.6278 2.8084 42 1 9.5409 -3.5045 0.3804 43 1 7.3675 -2.7701 -0.5016 44 1 1.5078 -1.7974 1.2866 45 1 2.5787 -0.4621 1.8916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338607832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:39 Heat of formation + Delta-G solvation = -5.496263 kcal Electronic energy + Delta-G solvation = -27725.850895 eV Core-core repulsion = 23902.352266 eV Total energy + Delta-G solvation = -3823.498629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.60976 -41.46000 -39.11376 -38.20072 -36.27247 -35.85120 -34.17519 -32.26166 -31.83562 -30.50037 -30.10582 -27.98997 -27.23845 -26.56629 -23.92957 -23.56256 -22.93241 -21.77165 -21.28086 -20.12412 -19.17482 -18.28812 -18.03300 -17.36783 -16.89536 -16.80860 -16.57548 -16.42741 -16.14323 -15.74475 -15.57882 -15.30317 -15.02603 -14.76184 -14.66608 -14.54852 -14.31370 -13.92498 -13.74484 -13.62229 -13.14723 -13.02316 -12.92673 -12.76827 -12.75573 -12.56519 -12.14040 -12.06694 -11.89100 -11.86599 -11.78547 -11.53523 -11.08667 -10.84587 -10.74341 -10.64593 -9.78705 -9.27170 -8.68822 -8.36612 -6.41564 -0.01822 0.56143 0.98587 1.28458 1.33872 1.42601 1.67346 1.86259 2.27954 2.35080 2.92110 2.95241 2.99207 3.25401 3.54674 3.59128 3.67098 3.93427 3.96096 4.14728 4.16599 4.23902 4.29564 4.32888 4.41112 4.47365 4.55090 4.57917 4.60201 4.67791 4.76667 4.78623 4.92861 4.96144 5.02376 5.12583 5.12959 5.16855 5.34305 5.47163 5.48657 5.59475 5.66873 5.77287 6.11393 6.17487 6.21933 6.65583 6.66033 6.84395 7.17202 7.24253 8.78785 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008705 B = 0.004398 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.738731 B = 6365.043066 C = 8741.748336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.103 3.897 3 O -0.560 6.560 4 C 0.106 3.894 5 N -0.649 5.649 6 C 0.618 3.382 7 O -0.595 6.595 8 C -0.267 4.267 9 C 0.128 3.872 10 N -0.461 5.461 11 C 0.123 3.877 12 C -0.017 4.017 13 C -0.527 4.527 14 H 0.052 0.948 15 C 0.023 3.977 16 N -0.938 5.938 17 Si 0.934 3.066 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.263 1.263 21 C 0.069 3.931 22 C -0.131 4.131 23 C -0.102 4.102 24 C -0.135 4.135 25 C -0.093 4.093 26 C -0.089 4.089 27 C 0.060 3.940 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.400 0.600 32 H 0.061 0.939 33 H 0.127 0.873 34 H 0.205 0.795 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.020 0.980 38 H 0.013 0.987 39 H 0.269 0.731 40 H 0.128 0.872 41 H 0.157 0.843 42 H 0.152 0.848 43 H 0.118 0.882 44 H 0.130 0.870 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.126 -4.104 -16.442 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.061 3.939 3 O -0.369 6.369 4 C -0.016 4.016 5 N -0.382 5.382 6 C 0.412 3.588 7 O -0.477 6.477 8 C -0.278 4.278 9 C -0.006 4.006 10 N -0.139 5.139 11 C 0.004 3.996 12 C -0.055 4.055 13 C -0.566 4.566 14 H 0.071 0.929 15 C -0.176 4.176 16 N -0.578 5.578 17 Si 0.759 3.241 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.188 1.188 21 C -0.036 4.036 22 C -0.151 4.151 23 C -0.121 4.121 24 C -0.153 4.153 25 C -0.111 4.111 26 C -0.093 4.093 27 C -0.062 4.062 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.251 0.749 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.222 0.778 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.038 0.962 38 H 0.031 0.969 39 H 0.078 0.922 40 H 0.146 0.854 41 H 0.175 0.825 42 H 0.170 0.830 43 H 0.136 0.864 44 H 0.147 0.853 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.254 -4.422 -16.931 19.795 hybrid contribution 0.277 1.085 0.535 1.241 sum -8.977 -3.337 -16.396 18.989 Atomic orbital electron populations 1.22164 0.89884 1.05160 1.04211 1.22440 0.93924 0.82757 0.94786 1.86534 1.64736 1.21753 1.63849 1.23387 0.87902 0.96923 0.93369 1.49247 1.09804 1.65955 1.13216 1.16806 0.79567 0.74961 0.87443 1.90693 1.66886 1.55761 1.34406 1.19858 0.95806 1.19974 0.92113 1.22821 0.95645 0.95455 0.86681 1.44335 1.09808 1.52335 1.07444 1.21978 1.04016 0.99544 0.74098 1.19785 0.96552 0.94068 0.95128 1.21126 1.40695 1.03113 0.91657 0.92929 1.25695 0.95665 1.00956 0.95253 1.70003 1.48893 1.30577 1.08342 0.85905 0.79328 0.79939 0.78950 1.18950 1.20821 1.18760 1.18571 0.89597 1.04029 0.91361 1.20427 0.90720 1.03111 1.00811 1.21176 0.99041 0.99235 0.92657 1.21265 0.96771 1.01370 0.95942 1.20702 0.92546 0.98873 0.99011 1.19058 0.93927 1.03944 0.92419 1.24403 0.88618 0.99219 0.93943 0.88893 0.89887 0.90706 0.74856 0.92007 0.85518 0.77830 0.89278 0.87162 0.96155 0.96911 0.92225 0.85396 0.82526 0.83039 0.86416 0.85259 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 9.54 71.98 0.69 -0.19 16 2 C 0.10 1.40 2.04 -10.37 -0.02 1.38 16 3 O -0.56 -10.09 13.57 -148.98 -2.02 -12.12 16 4 C 0.11 2.01 8.04 83.18 0.67 2.67 16 5 N -0.65 -16.54 3.69 -862.73 -3.18 -19.72 16 6 C 0.62 21.69 8.05 86.51 0.70 22.39 16 7 O -0.59 -25.11 16.94 -4.27 -0.07 -25.19 16 8 C -0.27 -9.25 6.27 -19.02 -0.12 -9.37 16 9 C 0.13 3.83 10.45 83.70 0.87 4.70 16 10 N -0.46 -15.36 2.74 -515.29 -1.41 -16.78 16 11 C 0.12 4.20 5.89 86.38 0.51 4.71 16 12 C -0.02 -0.74 4.36 29.85 0.13 -0.61 16 13 C -0.53 -27.47 9.66 25.60 0.25 -27.22 16 14 H 0.05 2.93 7.99 -2.91 -0.02 2.90 16 15 C 0.02 1.27 5.47 84.66 0.46 1.73 16 16 N -0.94 -55.15 13.96 21.45 0.30 -54.85 16 17 Si 0.93 42.84 27.47 68.60 1.88 44.73 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.26 -11.90 6.54 99.48 0.65 -11.25 16 21 C 0.07 2.43 6.79 38.92 0.26 2.69 16 22 C -0.13 -4.16 9.97 22.37 0.22 -3.94 16 23 C -0.10 -2.74 10.01 22.28 0.22 -2.52 16 24 C -0.13 -3.70 10.03 22.28 0.22 -3.48 16 25 C -0.09 -3.14 9.85 22.41 0.22 -2.92 16 26 C -0.09 -3.28 6.27 -20.08 -0.13 -3.41 16 27 C 0.06 0.92 6.55 83.27 0.55 1.46 16 28 H 0.09 0.24 7.89 -2.39 -0.02 0.22 16 29 H 0.08 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.40 3.65 9.04 -74.05 -0.67 2.98 16 32 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.13 1.59 8.10 -2.39 -0.02 1.57 16 34 H 0.21 4.42 5.05 -2.91 -0.01 4.41 16 35 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.11 3.25 8.11 -2.39 -0.02 3.24 16 37 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 38 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 39 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 40 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 41 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 42 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 43 H 0.12 4.12 7.45 -2.91 -0.02 4.10 16 44 H 0.13 1.13 7.93 -2.39 -0.02 1.11 16 45 H 0.09 1.32 6.16 -2.39 -0.01 1.31 16 Total: -1.00 -79.18 375.89 1.50 -77.68 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.29 Total: 18.14 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 5.71 Total: -11.90 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -4.29 Total: -91.34 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -2.09 Total: -37.30 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.73 kcal Total: -79.18 1.50 -77.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338607832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.183 kcal (2) G-P(sol) polarization free energy of solvation -79.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds