Wall clock time and date at job start Tue Mar 31 2020 15:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30163 * 126.80222 * 2 1 4 4 O 1.20927 * 111.60743 * 179.97438 * 3 2 1 5 5 C 1.34045 * 111.56105 * 359.76243 * 4 3 2 6 6 C 1.50700 * 126.77510 * 180.28579 * 5 4 3 7 7 C 1.35446 * 106.44923 * 0.37927 * 5 4 3 8 8 C 1.50700 * 128.00889 * 179.90477 * 7 5 4 9 9 H 1.09000 * 109.46904 * 5.33297 * 8 7 5 10 10 C 1.52997 * 109.47272 * 245.32942 * 8 7 5 11 11 C 1.53007 * 109.46722 * 125.32784 * 8 7 5 12 12 C 1.50696 * 109.46890 * 185.00288 * 11 8 7 13 13 O 1.21288 * 120.00139 * 0.02562 * 12 11 8 14 14 N 1.34778 * 120.00087 * 179.97438 * 12 11 8 15 15 C 1.39119 * 120.00024 * 185.68615 * 14 12 11 16 16 C 1.38652 * 120.28970 * 21.04190 * 15 14 12 17 17 C 1.38217 * 120.03233 * 180.25720 * 16 15 14 18 18 C 1.38861 * 120.62069 * 359.74557 * 17 16 15 19 19 C 1.36465 * 120.57677 * 359.97438 * 18 17 16 20 20 C 1.40736 * 119.94360 * 0.02562 * 19 18 17 21 21 C 1.41063 * 120.30417 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00353 * 204.57932 * 21 20 19 23 23 C 1.39963 * 120.00003 * 24.58019 * 21 20 19 24 24 N 1.30855 * 120.00142 * 202.76476 * 23 21 20 25 25 Si 1.86796 * 119.99670 * 22.75838 * 23 21 20 26 26 H 1.48500 * 109.47293 * 270.00122 * 25 23 21 27 27 H 1.48500 * 109.47305 * 30.00530 * 25 23 21 28 28 H 1.48510 * 109.47044 * 150.00225 * 25 23 21 29 29 H 1.09008 * 109.46646 * 274.87124 * 1 2 3 30 30 H 1.08997 * 109.47318 * 34.86752 * 1 2 3 31 31 H 1.09002 * 109.47024 * 154.87506 * 1 2 3 32 32 H 1.08995 * 109.47284 * 274.81705 * 6 5 4 33 33 H 1.09004 * 109.47089 * 34.81538 * 6 5 4 34 34 H 1.08996 * 109.47140 * 154.80994 * 6 5 4 35 35 H 1.09000 * 109.46778 * 184.47841 * 10 8 7 36 36 H 1.09001 * 109.47149 * 304.47030 * 10 8 7 37 37 H 1.08995 * 109.47195 * 64.47994 * 10 8 7 38 38 H 1.08995 * 109.46924 * 65.00264 * 11 8 7 39 39 H 1.09004 * 109.47056 * 305.00158 * 11 8 7 40 40 H 0.96998 * 119.99290 * 5.69135 * 14 12 11 41 41 H 1.08003 * 119.97784 * 359.97438 * 16 15 14 42 42 H 1.08007 * 119.68945 * 179.76759 * 17 16 15 43 43 H 1.07997 * 119.71133 * 180.02562 * 18 17 16 44 44 H 1.08000 * 120.02971 * 180.02562 * 19 18 17 45 45 H 0.97000 * 119.99692 * 354.96377 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0422 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6024 -0.6069 0.0061 6 6 4.9021 -1.3697 0.0144 7 6 2.3540 -1.1321 0.0006 8 6 1.9590 -2.5865 0.0015 9 1 2.8508 -3.2050 0.1029 10 6 1.2512 -2.9235 -1.3123 11 6 1.0142 -2.8576 1.1741 12 6 0.7168 -4.3330 1.2487 13 8 1.2121 -5.0930 0.4435 14 7 -0.0988 -4.8083 2.2107 15 6 -0.2802 -6.1802 2.3537 16 6 0.6567 -7.0663 1.8443 17 6 0.4685 -8.4284 1.9847 18 6 -0.6519 -8.9239 2.6384 19 6 -1.5869 -8.0744 3.1544 20 6 -1.4194 -6.6830 3.0251 21 6 -2.3815 -5.7979 3.5551 22 1 -2.4868 -4.8051 3.1432 23 6 -3.1996 -6.2063 4.6147 24 7 -4.3484 -5.6144 4.8202 25 14 -2.6515 -7.5966 5.7355 26 1 -3.1341 -8.8911 5.1909 27 1 -1.1687 -7.6143 5.8135 28 1 -3.2162 -7.3895 7.0934 29 1 -0.3633 0.0873 1.0241 30 1 -0.3634 0.8431 -0.5875 31 1 -0.3633 -0.9305 -0.4363 32 1 5.2635 -1.4829 -1.0076 33 1 5.6400 -0.8237 0.6023 34 1 4.7429 -2.3539 0.4548 35 1 0.8954 -3.9533 -1.2795 36 1 0.4048 -2.2510 -1.4519 37 1 1.9489 -2.8065 -2.1414 38 1 0.0854 -2.3066 1.0271 39 1 1.4853 -2.5345 2.1025 40 1 -0.5593 -4.1937 2.8032 41 1 1.5317 -6.6921 1.3335 42 1 1.2000 -9.1138 1.5825 43 1 -0.7840 -9.9909 2.7402 44 1 -2.4548 -8.4694 3.6615 45 1 -4.6004 -4.8457 4.2849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339194951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:16 Heat of formation + Delta-G solvation = 12.872870 kcal Electronic energy + Delta-G solvation = -27685.644707 eV Core-core repulsion = 23862.942624 eV Total energy + Delta-G solvation = -3822.702083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.93834 -41.44430 -39.36844 -37.54650 -35.66911 -35.50762 -34.75929 -33.44552 -32.07837 -30.78327 -29.75086 -28.65434 -28.43781 -26.57237 -24.97724 -23.85002 -22.47734 -21.57339 -21.07987 -20.88902 -20.09055 -18.69216 -18.41225 -18.08146 -17.55153 -16.86481 -16.47815 -16.03871 -15.78712 -15.54501 -15.16493 -14.90689 -14.54851 -14.43236 -14.37220 -14.21011 -14.05140 -13.88043 -13.84148 -13.70031 -13.56562 -13.44033 -13.13884 -12.67316 -12.60101 -12.42200 -12.29707 -12.29265 -12.16289 -11.68187 -11.51450 -11.40774 -11.14898 -10.88041 -10.82277 -10.35541 -10.07944 -9.61970 -9.28693 -8.76548 -6.45959 0.48585 0.71567 0.88311 1.18498 1.41203 1.55721 1.75707 1.84679 2.16796 2.19385 2.39085 2.66164 3.20190 3.51500 3.55449 3.60308 3.77518 3.99760 4.10413 4.24682 4.33331 4.38174 4.41281 4.50124 4.55994 4.59179 4.68628 4.69459 4.72233 4.76563 4.82207 4.87492 4.92730 5.03463 5.04667 5.09607 5.20327 5.27354 5.29938 5.46108 5.46410 5.60922 5.67080 5.96950 6.06446 6.08138 6.41859 6.63276 6.70101 6.91529 7.29869 7.33891 8.00593 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.003056 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.722748 B = 9158.641805 C =10142.509700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.023 3.977 3 N -0.398 5.398 4 O 0.083 5.917 5 C -0.022 4.022 6 C -0.076 4.076 7 C -0.204 4.204 8 C 0.018 3.982 9 H 0.093 0.907 10 C -0.148 4.148 11 C -0.127 4.127 12 C 0.501 3.499 13 O -0.556 6.556 14 N -0.643 5.643 15 C 0.020 3.980 16 C -0.104 4.104 17 C -0.224 4.224 18 C -0.094 4.094 19 C -0.253 4.253 20 C 0.062 3.938 21 C -0.541 4.541 22 H 0.063 0.937 23 C 0.019 3.981 24 N -0.835 5.835 25 Si 1.102 2.898 26 H -0.262 1.262 27 H -0.264 1.264 28 H -0.284 1.284 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.410 0.590 41 H 0.133 0.867 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.107 0.893 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.475 7.820 -6.571 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 N -0.107 5.107 4 O 0.021 5.979 5 C -0.086 4.086 6 C -0.133 4.133 7 C -0.208 4.208 8 C -0.002 4.002 9 H 0.111 0.889 10 C -0.205 4.205 11 C -0.167 4.167 12 C 0.291 3.709 13 O -0.436 6.436 14 N -0.285 5.285 15 C -0.075 4.075 16 C -0.125 4.125 17 C -0.244 4.244 18 C -0.112 4.112 19 C -0.273 4.273 20 C 0.058 3.942 21 C -0.570 4.570 22 H 0.081 0.919 23 C -0.197 4.197 24 N -0.459 5.459 25 Si 0.924 3.076 26 H -0.189 1.189 27 H -0.189 1.189 28 H -0.211 1.211 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.247 0.753 41 H 0.150 0.850 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.125 0.875 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.074 7.852 -5.871 16.341 hybrid contribution -0.519 0.860 -1.087 1.479 sum 12.555 8.712 -6.958 16.791 Atomic orbital electron populations 1.20444 0.85023 1.04504 1.04342 1.23772 0.99744 0.88412 1.01641 1.73814 0.89851 1.24885 1.22163 1.84761 1.21331 1.23423 1.68343 1.24879 0.99405 0.83190 1.01085 1.20575 0.88624 0.98619 1.05494 1.20952 0.91944 0.96899 1.10986 1.19014 0.98781 0.87980 0.94383 0.88923 1.21924 1.00444 1.02131 0.95965 1.21769 1.02763 0.90497 1.01633 1.21178 0.78418 0.91884 0.79462 1.90544 1.52592 1.59872 1.40578 1.43123 1.45736 1.06004 1.33646 1.17956 0.96339 0.83273 1.09915 1.21281 0.98313 0.93248 0.99616 1.20764 1.00614 0.94676 1.08303 1.20720 0.94228 0.99213 0.97072 1.20918 1.02348 0.93125 1.10862 1.17698 0.90206 0.92984 0.93348 1.20356 1.18005 1.01499 1.17154 0.91913 1.28082 0.90811 1.02965 0.97799 1.70634 1.17066 1.17720 1.40453 0.83231 0.77380 0.73254 0.73710 1.18851 1.18890 1.21078 0.89093 0.90003 0.89046 0.87843 0.88156 0.88234 0.92076 0.92361 0.92056 0.87442 0.87298 0.75329 0.84979 0.85843 0.85658 0.87526 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.57 9.15 71.24 0.65 -0.91 16 2 C 0.02 0.52 7.22 43.58 0.31 0.84 16 3 N -0.40 -10.26 12.07 -49.56 -0.60 -10.86 16 4 O 0.08 1.93 11.20 71.58 0.80 2.73 16 5 C -0.02 -0.42 7.49 25.04 0.19 -0.23 16 6 C -0.08 -0.82 10.27 71.24 0.73 -0.09 16 7 C -0.20 -4.27 4.94 -19.73 -0.10 -4.36 16 8 C 0.02 0.38 2.30 -11.54 -0.03 0.36 16 9 H 0.09 1.99 6.80 -2.39 -0.02 1.97 16 10 C -0.15 -3.38 8.94 71.98 0.64 -2.74 16 11 C -0.13 -2.92 4.95 29.85 0.15 -2.77 16 12 C 0.50 16.30 7.34 87.66 0.64 16.94 16 13 O -0.56 -20.72 10.95 -3.05 -0.03 -20.75 16 14 N -0.64 -24.15 5.16 -302.27 -1.56 -25.71 16 15 C 0.02 0.90 6.52 38.88 0.25 1.16 16 16 C -0.10 -4.49 8.76 22.36 0.20 -4.29 16 17 C -0.22 -9.04 10.04 22.41 0.22 -8.81 16 18 C -0.09 -3.85 9.97 22.00 0.22 -3.63 16 19 C -0.25 -11.72 7.36 22.47 0.17 -11.55 16 20 C 0.06 3.00 5.21 -21.18 -0.11 2.89 16 21 C -0.54 -27.28 8.78 23.38 0.21 -27.08 16 22 H 0.06 3.19 7.16 -2.91 -0.02 3.17 16 23 C 0.02 0.96 5.37 85.26 0.46 1.41 16 24 N -0.84 -43.29 13.66 21.83 0.30 -42.99 16 25 Si 1.10 46.73 25.03 68.60 1.72 48.44 16 26 H -0.26 -10.49 6.34 99.48 0.63 -9.86 16 27 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 29 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.54 5.15 -2.39 -0.01 1.53 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.10 1.01 7.14 -2.39 -0.02 0.99 16 35 H 0.06 1.74 5.88 -2.39 -0.01 1.72 16 36 H 0.06 1.22 6.00 -2.39 -0.01 1.21 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 2.21 6.09 -2.39 -0.01 2.19 16 39 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.41 14.39 7.36 -92.71 -0.68 13.71 16 41 H 0.13 5.54 5.52 -2.91 -0.02 5.52 16 42 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 43 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 44 H 0.11 4.89 4.20 -2.91 -0.01 4.87 16 45 H 0.28 14.28 8.73 -92.71 -0.81 13.47 16 Total: -1.00 -62.18 358.20 5.69 -56.49 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: 0.25 Total: 35.52 kcal Atomic # 6 Polarization: -47.69 SS G_CDS: 4.81 Total: -42.88 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -1.86 Total: -79.55 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.77 Total: -18.02 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.72 Total: 48.44 kcal Total: -62.18 5.69 -56.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339194951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.362 kcal (2) G-P(sol) polarization free energy of solvation -62.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds