Wall clock time and date at job start Tue Mar 31 2020 15:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 115.54860 * 2 1 4 4 C 1.53001 * 110.53420 * 157.15863 * 3 2 1 5 5 N 1.47311 * 110.72914 * 280.07497 * 3 2 1 6 6 C 1.34525 * 106.62227 * 118.36982 * 5 3 2 7 7 O 1.21536 * 123.77764 * 180.21305 * 6 5 3 8 8 N 1.33795 * 112.45282 * 0.38294 * 6 5 3 9 9 C 1.46505 * 124.17607 * 179.86472 * 8 6 5 10 10 C 1.50706 * 109.47027 * 269.70093 * 9 8 6 11 11 C 1.38630 * 119.74733 * 90.00182 * 10 9 8 12 12 C 1.37624 * 120.24825 * 180.02562 * 11 10 9 13 13 C 1.40714 * 119.74232 * 359.97438 * 12 11 10 14 14 C 1.41397 * 120.24656 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99450 * 335.58660 * 14 13 12 16 16 C 1.39941 * 120.00269 * 155.85916 * 14 13 12 17 17 N 1.30819 * 120.00128 * 342.03833 * 16 14 13 18 18 Si 1.86804 * 119.99719 * 162.03335 * 16 14 13 19 19 H 1.48495 * 109.47119 * 60.00752 * 18 16 14 20 20 H 1.48504 * 109.46608 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47016 * 299.99984 * 18 16 14 22 22 C 1.40714 * 119.51261 * 0.27273 * 13 12 11 23 23 C 1.37623 * 119.74680 * 359.42814 * 22 13 12 24 24 C 1.34762 * 111.64744 * 359.59522 * 8 6 5 25 25 O 1.21238 * 127.16050 * 180.25884 * 24 8 6 26 26 C 1.52999 * 117.51348 * 145.69354 * 2 1 3 27 27 C 1.52995 * 117.49807 * 214.32446 * 2 1 3 28 28 H 1.08999 * 109.46629 * 60.00452 * 1 2 3 29 29 H 1.08997 * 109.46906 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46847 * 300.00501 * 1 2 3 31 31 H 1.09001 * 109.46760 * 297.86446 * 4 3 2 32 32 H 1.08993 * 109.47313 * 57.86748 * 4 3 2 33 33 H 1.09000 * 109.46911 * 177.86857 * 4 3 2 34 34 H 0.97001 * 126.69037 * 298.63109 * 5 3 2 35 35 H 1.09003 * 109.47177 * 149.70390 * 9 8 6 36 36 H 1.08995 * 109.47196 * 29.70216 * 9 8 6 37 37 H 1.08000 * 119.87779 * 0.02562 * 11 10 9 38 38 H 1.07997 * 120.13016 * 180.02562 * 12 11 10 39 39 H 0.97009 * 120.00125 * 179.97438 * 17 16 14 40 40 H 1.08006 * 120.12771 * 179.70202 * 22 13 12 41 41 H 1.07994 * 119.87724 * 180.31365 * 23 22 13 42 42 H 1.09003 * 117.49783 * 214.97327 * 26 2 1 43 43 H 1.08993 * 117.50481 * 359.97438 * 26 2 1 44 44 H 1.08999 * 117.50281 * 359.97438 * 27 2 1 45 45 H 1.09002 * 117.49445 * 145.00308 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 3.6127 1.2951 0.5562 5 7 2.1973 1.9547 -1.3565 6 6 1.4730 3.0869 -1.2990 7 8 1.2738 3.8108 -2.2546 8 7 0.9995 3.3287 -0.0712 9 6 0.1817 4.4921 0.2810 10 6 1.0778 5.6222 0.7182 11 6 1.5507 6.5272 -0.2193 12 6 2.3701 7.5628 0.1685 13 6 2.7269 7.7010 1.5226 14 6 3.5677 8.7613 1.9329 15 1 4.2441 9.2185 1.2259 16 6 3.5273 9.2143 3.2563 17 7 2.5024 8.9247 4.0159 18 14 4.9372 10.2326 3.9383 19 1 5.0826 11.4751 3.1381 20 1 4.6543 10.5847 5.3530 21 1 6.1953 9.4471 3.8661 22 6 2.2452 6.7734 2.4646 23 6 1.4221 5.7493 2.0552 24 6 1.3627 2.3670 0.8001 25 8 1.0852 2.3036 1.9785 26 6 2.2369 -1.1209 0.7648 27 6 2.2365 -1.1208 -0.7652 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.5784 0.9541 1.5909 32 1 4.1940 0.5912 -0.0393 33 1 4.0792 2.2793 0.5132 34 1 2.6356 1.5863 -2.1395 35 1 -0.4939 4.2284 1.0948 36 1 -0.3993 4.8041 -0.5869 37 1 1.2752 6.4193 -1.2580 38 1 2.7371 8.2670 -0.5634 39 1 2.4746 9.2384 4.9335 40 1 2.5167 6.8673 3.5057 41 1 1.0470 5.0391 2.7772 42 1 3.1721 -0.8749 1.2679 43 1 1.6120 -1.8583 1.2685 44 1 1.6113 -1.8584 -1.2684 45 1 3.1714 -0.8747 -1.2687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340603074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:55 Heat of formation + Delta-G solvation = -2.050901 kcal Electronic energy + Delta-G solvation = -28480.800447 eV Core-core repulsion = 24657.451220 eV Total energy + Delta-G solvation = -3823.349227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.44647 -38.87527 -38.14922 -37.49928 -35.65267 -34.69468 -33.46273 -30.63718 -30.21745 -29.26841 -29.12020 -27.32708 -24.86193 -24.05451 -22.75523 -22.64296 -21.08417 -20.89586 -19.66158 -19.30270 -17.68609 -17.31154 -16.98609 -16.21593 -15.53954 -15.42827 -15.28625 -15.12435 -14.64649 -14.12688 -13.97675 -13.75138 -13.62277 -13.55187 -13.13164 -12.80134 -12.70060 -12.59342 -12.33040 -11.94058 -11.84477 -11.72291 -11.59876 -11.48797 -11.25992 -11.07536 -10.88306 -10.79367 -10.66423 -10.43762 -10.09447 -9.91414 -9.80090 -9.42570 -9.40602 -9.16183 -9.09406 -7.48369 -7.37346 -6.81299 -4.40605 1.85486 2.29421 2.80545 3.03872 3.05969 3.09016 3.10446 3.30629 3.33074 3.44998 3.89267 4.03560 4.21419 4.44052 4.45939 4.58628 4.67874 4.92799 5.22794 5.27404 5.38559 5.41530 5.45418 5.55055 5.55998 5.64632 5.65958 5.79678 5.81472 5.89103 5.92847 5.93977 5.99168 6.25350 6.40320 6.44027 6.88084 6.95220 7.03026 7.24848 7.31899 7.39680 7.60373 7.66022 7.82927 8.02530 8.10115 8.26920 8.38278 8.60725 8.84942 8.93988 10.12643 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019687 B = 0.003189 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.934195 B = 8777.890900 C = 9202.649773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.128 4.128 3 C 0.156 3.844 4 C -0.151 4.151 5 N -0.724 5.724 6 C 0.704 3.296 7 O -0.543 6.543 8 N -0.564 5.564 9 C 0.180 3.820 10 C -0.253 4.253 11 C -0.061 4.061 12 C -0.232 4.232 13 C 0.119 3.881 14 C -0.459 4.459 15 H 0.078 0.922 16 C 0.076 3.924 17 N -0.787 5.787 18 Si 0.909 3.091 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.263 1.263 22 C -0.172 4.172 23 C -0.077 4.077 24 C 0.537 3.463 25 O -0.464 6.464 26 C -0.161 4.161 27 C -0.163 4.163 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.433 0.567 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.282 0.718 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.243 -18.575 -5.332 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.129 4.129 3 C 0.065 3.935 4 C -0.209 4.209 5 N -0.388 5.388 6 C 0.405 3.595 7 O -0.416 6.416 8 N -0.309 5.309 9 C 0.062 3.938 10 C -0.255 4.255 11 C -0.080 4.080 12 C -0.252 4.252 13 C 0.116 3.884 14 C -0.488 4.488 15 H 0.096 0.904 16 C -0.143 4.143 17 N -0.411 5.411 18 Si 0.733 3.267 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.188 1.188 22 C -0.191 4.191 23 C -0.096 4.096 24 C 0.322 3.678 25 O -0.333 6.333 26 C -0.198 4.198 27 C -0.200 4.200 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.276 0.724 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.135 0.865 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.715 -18.043 -4.909 18.713 hybrid contribution 0.814 0.421 0.006 0.917 sum 0.098 -17.622 -4.903 18.291 Atomic orbital electron populations 1.21394 0.91277 1.02598 1.02566 1.21375 0.95285 0.88334 1.07911 1.20781 0.97324 0.92259 0.83118 1.22097 0.92376 1.04065 1.02367 1.45619 1.56690 1.25121 1.11322 1.15941 0.78595 0.81632 0.83312 1.90974 1.62470 1.50698 1.37506 1.46919 1.49576 1.24573 1.09801 1.20382 0.91010 0.81740 1.00674 1.19060 1.11198 1.00940 0.94296 1.20475 0.96490 0.94312 0.96713 1.20966 1.06249 1.01496 0.96465 1.17673 0.88997 0.90817 0.90876 1.19627 1.19258 1.14893 0.95054 0.90362 1.25948 0.95824 0.95684 0.96806 1.69823 1.26390 1.36505 1.08414 0.86355 0.81865 0.80322 0.78140 1.18923 1.20244 1.18775 1.21282 1.02450 0.95230 1.00143 1.20597 0.97757 0.97341 0.93866 1.20462 0.78902 0.81774 0.86624 1.90759 1.54459 1.75213 1.12916 1.23240 1.02705 0.99609 0.94291 1.23050 1.02171 0.99957 0.94846 0.92108 0.91570 0.91484 0.89621 0.90574 0.90746 0.72374 0.89709 0.89549 0.88891 0.88964 0.90664 0.86467 0.89158 0.87624 0.88183 0.88263 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.00 37.16 0.33 -0.86 16 2 C -0.13 -1.19 2.16 -154.51 -0.33 -1.53 16 3 C 0.16 1.83 1.08 -132.09 -0.14 1.69 16 4 C -0.15 -1.55 7.57 37.16 0.28 -1.27 16 5 N -0.72 -8.71 5.90 -52.94 -0.31 -9.02 16 6 C 0.70 11.61 8.62 -88.02 -0.76 10.85 16 7 O -0.54 -10.61 17.48 5.33 0.09 -10.51 16 8 N -0.56 -9.61 2.59 -122.02 -0.32 -9.92 16 9 C 0.18 3.33 5.82 -5.19 -0.03 3.30 16 10 C -0.25 -5.64 5.49 -104.33 -0.57 -6.21 16 11 C -0.06 -1.43 9.67 -39.66 -0.38 -1.81 16 12 C -0.23 -5.87 9.80 -38.87 -0.38 -6.25 16 13 C 0.12 3.22 5.57 -106.83 -0.60 2.62 16 14 C -0.46 -12.26 9.05 -37.74 -0.34 -12.60 16 15 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 16 C 0.08 1.91 5.14 -17.35 -0.09 1.82 16 17 N -0.79 -20.34 10.96 55.55 0.61 -19.73 16 18 Si 0.91 18.62 29.59 -169.99 -5.03 13.59 16 19 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 C -0.17 -4.53 8.70 -38.87 -0.34 -4.87 16 23 C -0.08 -1.83 9.67 -39.66 -0.38 -2.22 16 24 C 0.54 8.50 5.56 -10.56 -0.06 8.44 16 25 O -0.46 -8.38 17.40 5.59 0.10 -8.28 16 26 C -0.16 -1.20 9.36 -26.73 -0.25 -1.45 16 27 C -0.16 -1.09 9.59 -26.73 -0.26 -1.35 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 30 H 0.07 0.78 7.08 -51.93 -0.37 0.41 16 31 H 0.09 0.85 7.08 -51.93 -0.37 0.49 16 32 H 0.08 0.56 7.00 -51.93 -0.36 0.20 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.43 4.02 8.96 -40.82 -0.37 3.66 16 35 H 0.08 1.47 7.94 -51.93 -0.41 1.06 16 36 H 0.09 1.52 7.79 -51.93 -0.40 1.12 16 37 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 38 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 39 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 40 H 0.12 3.19 6.16 -52.48 -0.32 2.87 16 41 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 42 H 0.11 0.74 6.00 -51.93 -0.31 0.43 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 0.56 7.47 -51.93 -0.39 0.17 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -30.64 373.62 -9.76 -40.40 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.23 Total: 9.54 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -4.30 Total: -11.70 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.02 Total: -38.67 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.19 Total: -18.79 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.64 -9.76 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340603074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.354 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds