Wall clock time and date at job start Tue Mar 31 2020 15:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 115.54860 * 2 1 4 4 C 1.53001 * 110.53420 * 157.15863 * 3 2 1 5 5 N 1.47311 * 110.72914 * 280.07497 * 3 2 1 6 6 C 1.34525 * 106.62227 * 118.36982 * 5 3 2 7 7 O 1.21536 * 123.77764 * 180.21305 * 6 5 3 8 8 N 1.33795 * 112.45282 * 0.38294 * 6 5 3 9 9 C 1.46505 * 124.17607 * 179.86472 * 8 6 5 10 10 C 1.50706 * 109.47027 * 269.70093 * 9 8 6 11 11 C 1.38630 * 119.74733 * 90.00182 * 10 9 8 12 12 C 1.37624 * 120.24825 * 180.02562 * 11 10 9 13 13 C 1.40714 * 119.74232 * 359.97438 * 12 11 10 14 14 C 1.41397 * 120.24656 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99450 * 335.58660 * 14 13 12 16 16 C 1.39941 * 120.00269 * 155.85916 * 14 13 12 17 17 N 1.30819 * 120.00128 * 342.03833 * 16 14 13 18 18 Si 1.86804 * 119.99719 * 162.03335 * 16 14 13 19 19 H 1.48495 * 109.47119 * 60.00752 * 18 16 14 20 20 H 1.48504 * 109.46608 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47016 * 299.99984 * 18 16 14 22 22 C 1.40714 * 119.51261 * 0.27273 * 13 12 11 23 23 C 1.37623 * 119.74680 * 359.42814 * 22 13 12 24 24 C 1.34762 * 111.64744 * 359.59522 * 8 6 5 25 25 O 1.21238 * 127.16050 * 180.25884 * 24 8 6 26 26 C 1.52999 * 117.51348 * 145.69354 * 2 1 3 27 27 C 1.52995 * 117.49807 * 214.32446 * 2 1 3 28 28 H 1.08999 * 109.46629 * 60.00452 * 1 2 3 29 29 H 1.08997 * 109.46906 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46847 * 300.00501 * 1 2 3 31 31 H 1.09001 * 109.46760 * 297.86446 * 4 3 2 32 32 H 1.08993 * 109.47313 * 57.86748 * 4 3 2 33 33 H 1.09000 * 109.46911 * 177.86857 * 4 3 2 34 34 H 0.97001 * 126.69037 * 298.63109 * 5 3 2 35 35 H 1.09003 * 109.47177 * 149.70390 * 9 8 6 36 36 H 1.08995 * 109.47196 * 29.70216 * 9 8 6 37 37 H 1.08000 * 119.87779 * 0.02562 * 11 10 9 38 38 H 1.07997 * 120.13016 * 180.02562 * 12 11 10 39 39 H 0.97009 * 120.00125 * 179.97438 * 17 16 14 40 40 H 1.08006 * 120.12771 * 179.70202 * 22 13 12 41 41 H 1.07994 * 119.87724 * 180.31365 * 23 22 13 42 42 H 1.09003 * 117.49783 * 214.97327 * 26 2 1 43 43 H 1.08993 * 117.50481 * 359.97438 * 26 2 1 44 44 H 1.08999 * 117.50281 * 359.97438 * 27 2 1 45 45 H 1.09002 * 117.49445 * 145.00308 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 3.6127 1.2951 0.5562 5 7 2.1973 1.9547 -1.3565 6 6 1.4730 3.0869 -1.2990 7 8 1.2738 3.8108 -2.2546 8 7 0.9995 3.3287 -0.0712 9 6 0.1817 4.4921 0.2810 10 6 1.0778 5.6222 0.7182 11 6 1.5507 6.5272 -0.2193 12 6 2.3701 7.5628 0.1685 13 6 2.7269 7.7010 1.5226 14 6 3.5677 8.7613 1.9329 15 1 4.2441 9.2185 1.2259 16 6 3.5273 9.2143 3.2563 17 7 2.5024 8.9247 4.0159 18 14 4.9372 10.2326 3.9383 19 1 5.0826 11.4751 3.1381 20 1 4.6543 10.5847 5.3530 21 1 6.1953 9.4471 3.8661 22 6 2.2452 6.7734 2.4646 23 6 1.4221 5.7493 2.0552 24 6 1.3627 2.3670 0.8001 25 8 1.0852 2.3036 1.9785 26 6 2.2369 -1.1209 0.7648 27 6 2.2365 -1.1208 -0.7652 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.5784 0.9541 1.5909 32 1 4.1940 0.5912 -0.0393 33 1 4.0792 2.2793 0.5132 34 1 2.6356 1.5863 -2.1395 35 1 -0.4939 4.2284 1.0948 36 1 -0.3993 4.8041 -0.5869 37 1 1.2752 6.4193 -1.2580 38 1 2.7371 8.2670 -0.5634 39 1 2.4746 9.2384 4.9335 40 1 2.5167 6.8673 3.5057 41 1 1.0470 5.0391 2.7772 42 1 3.1721 -0.8749 1.2679 43 1 1.6120 -1.8583 1.2685 44 1 1.6113 -1.8584 -1.2684 45 1 3.1714 -0.8747 -1.2687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340603074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:54 Heat of formation + Delta-G solvation = -19.498167 kcal Electronic energy + Delta-G solvation = -28481.557017 eV Core-core repulsion = 24657.451220 eV Total energy + Delta-G solvation = -3824.105797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.64552 -39.96377 -39.60827 -39.03642 -36.95393 -36.20019 -35.09580 -32.31549 -31.29598 -31.19789 -29.89325 -29.01621 -26.23355 -25.50861 -23.82719 -23.35345 -22.89325 -22.49737 -21.24180 -20.25599 -19.27846 -18.90280 -18.08421 -17.33389 -17.24983 -16.68561 -16.58531 -16.41031 -15.87459 -15.68335 -15.48688 -15.36001 -15.08186 -14.49330 -14.35875 -14.00063 -13.88512 -13.62782 -13.54294 -13.50154 -13.31985 -13.10565 -13.03345 -12.74809 -12.62948 -12.49214 -12.31073 -12.09623 -11.99917 -11.71323 -11.55740 -11.34736 -11.07680 -10.98933 -10.78821 -10.70481 -10.39509 -9.45867 -9.34396 -8.70326 -6.41627 0.60392 0.70683 1.07879 1.31214 1.36609 1.48484 1.58183 2.00757 2.14129 2.17688 2.63093 2.70733 3.08269 3.38807 3.63304 3.66987 3.79125 3.93543 4.07009 4.17994 4.19617 4.37265 4.39716 4.50417 4.54270 4.55175 4.69100 4.75083 4.79818 4.81092 4.89434 4.94687 4.96478 4.96772 5.09571 5.16728 5.20804 5.29219 5.31492 5.37939 5.62921 5.83986 5.86759 6.02405 6.05494 6.19147 6.30671 6.41879 6.62157 6.86524 6.94933 7.14562 8.26506 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019687 B = 0.003189 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.934195 B = 8777.890900 C = 9202.649773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.153 4.153 3 C 0.166 3.834 4 C -0.150 4.150 5 N -0.699 5.699 6 C 0.699 3.301 7 O -0.578 6.578 8 N -0.572 5.572 9 C 0.184 3.816 10 C -0.240 4.240 11 C -0.062 4.062 12 C -0.248 4.248 13 C 0.091 3.909 14 C -0.497 4.497 15 H 0.078 0.922 16 C 0.036 3.964 17 N -0.819 5.819 18 Si 0.985 3.015 19 H -0.258 1.258 20 H -0.265 1.265 21 H -0.260 1.260 22 C -0.192 4.192 23 C -0.078 4.078 24 C 0.527 3.473 25 O -0.492 6.492 26 C -0.157 4.157 27 C -0.139 4.139 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.051 0.949 34 H 0.448 0.552 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.291 0.709 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 -20.959 -5.951 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.154 4.154 3 C 0.076 3.924 4 C -0.208 4.208 5 N -0.364 5.364 6 C 0.400 3.600 7 O -0.454 6.454 8 N -0.316 5.316 9 C 0.064 3.936 10 C -0.242 4.242 11 C -0.081 4.081 12 C -0.267 4.267 13 C 0.088 3.912 14 C -0.526 4.526 15 H 0.096 0.904 16 C -0.180 4.180 17 N -0.444 5.444 18 Si 0.805 3.195 19 H -0.182 1.182 20 H -0.189 1.189 21 H -0.184 1.184 22 C -0.212 4.212 23 C -0.097 4.097 24 C 0.315 3.685 25 O -0.363 6.363 26 C -0.194 4.194 27 C -0.175 4.175 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.295 0.705 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.131 0.869 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.404 -20.484 -5.547 21.226 hybrid contribution 0.365 1.028 0.163 1.103 sum 0.769 -19.457 -5.384 20.202 Atomic orbital electron populations 1.21348 0.91930 1.03450 1.00804 1.21323 0.94901 0.87461 1.11701 1.20850 0.97627 0.92318 0.81630 1.22162 0.91327 1.03903 1.03372 1.45506 1.55125 1.23496 1.12275 1.16056 0.78915 0.82434 0.82550 1.90949 1.63970 1.52150 1.38341 1.46798 1.49772 1.24407 1.10651 1.20241 0.90585 0.81290 1.01481 1.19393 1.10074 1.01396 0.93382 1.20641 0.95971 0.93919 0.97553 1.21143 1.07001 1.02417 0.96166 1.17978 0.89950 0.91552 0.91720 1.19881 1.20308 1.15884 0.96500 0.90426 1.26830 0.98190 0.96610 0.96405 1.69872 1.28019 1.37458 1.09018 0.85215 0.77963 0.78531 0.77796 1.18203 1.18931 1.18417 1.21237 1.04051 0.96412 0.99481 1.20716 0.97279 0.96820 0.94890 1.21228 0.78699 0.82083 0.86460 1.90736 1.55527 1.75877 1.14138 1.23375 1.02616 0.98150 0.95252 1.23201 1.02229 0.97644 0.94472 0.93146 0.89406 0.94000 0.89218 0.86786 0.92946 0.70462 0.88696 0.88553 0.87583 0.88534 0.89859 0.88058 0.88339 0.86968 0.87368 0.86854 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.13 9.00 71.99 0.65 -1.48 16 2 C -0.15 -2.43 2.16 -52.18 -0.11 -2.54 16 3 C 0.17 3.56 1.08 2.98 0.00 3.57 16 4 C -0.15 -2.71 7.57 71.98 0.54 -2.16 16 5 N -0.70 -15.44 5.90 -439.82 -2.59 -18.04 16 6 C 0.70 22.49 8.62 179.44 1.55 24.03 16 7 O -0.58 -22.27 17.48 -3.83 -0.07 -22.34 16 8 N -0.57 -19.30 2.59 -777.20 -2.01 -21.31 16 9 C 0.18 6.77 5.82 85.63 0.50 7.27 16 10 C -0.24 -10.86 5.49 -19.67 -0.11 -10.97 16 11 C -0.06 -2.95 9.67 22.22 0.21 -2.74 16 12 C -0.25 -12.92 9.80 22.73 0.22 -12.70 16 13 C 0.09 5.09 5.57 -21.29 -0.12 4.97 16 14 C -0.50 -27.48 9.05 23.46 0.21 -27.26 16 15 H 0.08 4.13 7.91 -2.91 -0.02 4.10 16 16 C 0.04 1.82 5.14 85.26 0.44 2.26 16 17 N -0.82 -43.49 10.96 21.82 0.24 -43.25 16 18 Si 0.98 38.46 29.59 68.60 2.03 40.49 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 C -0.19 -10.57 8.70 22.73 0.20 -10.37 16 23 C -0.08 -3.85 9.67 22.22 0.21 -3.63 16 24 C 0.53 16.46 5.56 87.94 0.49 16.95 16 25 O -0.49 -17.82 17.40 -2.90 -0.05 -17.87 16 26 C -0.16 -1.75 9.36 30.60 0.29 -1.47 16 27 C -0.14 -1.22 9.59 30.59 0.29 -0.93 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 1.15 8.11 -2.39 -0.02 1.13 16 30 H 0.04 0.95 7.08 -2.39 -0.02 0.93 16 31 H 0.09 1.59 7.08 -2.39 -0.02 1.57 16 32 H 0.11 1.19 7.00 -2.39 -0.02 1.17 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.45 7.03 8.96 -92.71 -0.83 6.20 16 35 H 0.09 3.29 7.94 -2.39 -0.02 3.27 16 36 H 0.10 3.36 7.79 -2.39 -0.02 3.34 16 37 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.29 13.91 8.30 -92.70 -0.77 13.14 16 40 H 0.10 5.80 6.16 -2.91 -0.02 5.79 16 41 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 42 H 0.11 1.13 6.00 -2.39 -0.01 1.12 16 43 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 45 H 0.11 0.67 7.47 -2.39 -0.02 0.66 16 Total: -1.00 -69.54 373.62 3.21 -66.33 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.19 Total: 33.18 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 5.47 Total: -17.20 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -4.37 Total: -82.59 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -0.12 Total: -40.21 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -69.54 3.21 -66.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340603074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.832 kcal (2) G-P(sol) polarization free energy of solvation -69.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds