Wall clock time and date at job start Tue Mar 31 2020 15:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33682 * 126.27368 * 2 1 4 4 C 1.30623 * 108.99824 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.42257 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47002 * 89.99660 * 5 4 3 7 7 C 1.53003 * 109.47508 * 295.00367 * 6 5 4 8 8 C 1.53003 * 109.46654 * 175.00297 * 6 5 4 9 9 O 1.33675 * 109.16230 * 0.24214 * 4 3 2 10 10 C 1.35352 * 107.68482 * 359.61360 * 9 4 3 11 11 C 1.46651 * 126.64893 * 180.18357 * 10 9 4 12 12 O 1.21702 * 120.00008 * 180.23591 * 11 10 9 13 13 N 1.34775 * 120.00390 * 0.22647 * 11 10 9 14 14 C 1.38973 * 120.00367 * 175.79622 * 13 11 10 15 15 C 1.38692 * 120.28915 * 34.59364 * 14 13 11 16 16 C 1.38195 * 120.03486 * 179.97438 * 15 14 13 17 17 C 1.38885 * 120.61865 * 0.02562 * 16 15 14 18 18 C 1.36459 * 120.58695 * 0.02562 * 17 16 15 19 19 C 1.40740 * 119.94243 * 359.70204 * 18 17 16 20 20 C 1.41051 * 120.29979 * 180.29737 * 19 18 17 21 21 H 1.07996 * 119.99773 * 214.95039 * 20 19 18 22 22 C 1.39958 * 120.00125 * 34.95545 * 20 19 18 23 23 N 1.30854 * 120.00038 * 355.63143 * 22 20 19 24 24 Si 1.86802 * 120.00221 * 175.63790 * 22 20 19 25 25 H 1.48501 * 109.47095 * 59.99542 * 24 22 20 26 26 H 1.48491 * 109.47324 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.46798 * 300.00157 * 24 22 20 28 28 H 1.08999 * 109.47150 * 89.97268 * 1 2 3 29 29 H 1.08993 * 109.47299 * 209.97283 * 1 2 3 30 30 H 1.09002 * 109.47043 * 329.97553 * 1 2 3 31 31 H 1.09003 * 109.46576 * 329.99890 * 5 4 3 32 32 H 1.09000 * 109.47246 * 210.00158 * 5 4 3 33 33 H 1.08994 * 109.47057 * 55.01061 * 6 5 4 34 34 H 1.08997 * 109.46639 * 59.99967 * 7 6 5 35 35 H 1.09000 * 109.46995 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.46801 * 300.00183 * 7 6 5 37 37 H 1.09011 * 109.46821 * 180.02562 * 8 6 5 38 38 H 1.08993 * 109.47428 * 299.99685 * 8 6 5 39 39 H 1.08999 * 109.47199 * 60.00757 * 8 6 5 40 40 H 0.96998 * 119.99747 * 355.81014 * 13 11 10 41 41 H 1.08000 * 119.98142 * 359.97438 * 15 14 13 42 42 H 1.07997 * 119.69071 * 179.97438 * 16 15 14 43 43 H 1.08000 * 119.70547 * 179.97438 * 17 16 15 44 44 H 1.07995 * 120.02479 * 179.97438 * 18 17 16 45 45 H 0.96999 * 119.99958 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0777 0.0000 4 6 3.5453 0.6898 -0.0006 5 6 4.7440 1.6031 -0.0013 6 6 5.1503 1.9124 1.4409 7 6 4.0364 2.7072 2.1254 8 6 6.4394 2.7366 1.4419 9 8 3.5893 -0.6462 -0.0063 10 6 2.3140 -1.0996 -0.0007 11 6 1.8834 -2.5015 -0.0001 12 8 0.6972 -2.7737 0.0010 13 7 2.8011 -3.4884 -0.0009 14 6 2.3955 -4.8147 0.0879 15 6 1.2128 -5.2259 -0.5085 16 6 0.8147 -6.5461 -0.4174 17 6 1.5890 -7.4726 0.2689 18 6 2.7566 -7.0955 0.8660 19 6 3.1879 -5.7583 0.7834 20 6 4.3967 -5.3616 1.3925 21 1 4.4828 -4.3789 1.8319 22 6 5.4846 -6.2415 1.4272 23 7 5.3543 -7.4613 0.9718 24 14 7.1225 -5.6747 2.1239 25 1 6.9438 -5.2689 3.5412 26 1 8.1041 -6.7862 2.0477 27 1 7.6213 -4.5183 1.3372 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 4.4933 2.5311 -0.5152 32 1 5.5721 1.1153 -0.5155 33 1 5.3151 0.9796 1.9800 34 1 3.1181 2.1200 2.1246 35 1 4.3261 2.9279 3.1528 36 1 3.8716 3.6401 1.5863 37 1 6.7292 2.9566 2.4695 38 1 7.2330 2.1704 0.9544 39 1 6.2746 3.6695 0.9029 40 1 3.7449 -3.2731 -0.0632 41 1 0.6026 -4.5139 -1.0443 42 1 -0.1075 -6.8601 -0.8835 43 1 1.2636 -8.5006 0.3312 44 1 3.3514 -7.8234 1.3976 45 1 6.1083 -8.0710 0.9955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344356446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:23 Heat of formation + Delta-G solvation = -12.463796 kcal Electronic energy + Delta-G solvation = -27631.429738 eV Core-core repulsion = 23807.628975 eV Total energy + Delta-G solvation = -3823.800764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.37389 -39.54553 -37.29094 -36.79371 -35.29310 -33.82908 -33.68115 -31.78357 -29.67744 -28.91528 -28.64398 -27.37034 -26.87038 -25.22675 -22.78559 -21.89753 -21.35794 -20.76685 -20.24641 -19.66439 -17.92633 -17.26252 -16.88907 -16.33702 -15.93747 -15.39627 -15.23400 -14.54384 -14.43194 -14.28578 -14.07702 -13.96678 -13.21297 -13.11928 -13.02150 -12.90884 -12.69240 -12.53733 -12.39664 -12.26429 -11.98920 -11.81801 -11.45091 -11.30439 -11.25785 -11.21614 -11.03875 -11.02803 -10.80647 -10.73103 -10.53089 -10.23328 -9.87753 -9.50305 -9.28580 -9.02446 -8.70082 -7.37560 -7.04168 -6.69116 -4.51250 0.94113 2.40833 2.48165 2.68520 2.90080 3.00609 3.02272 3.15032 3.53084 3.68901 3.86511 3.94643 4.51708 4.57699 4.60433 4.71564 4.83046 5.07221 5.19586 5.25882 5.40751 5.42443 5.52774 5.58992 5.59972 5.66121 5.69795 5.75908 5.84469 5.94455 6.01137 6.03673 6.13731 6.26494 6.39310 6.45391 6.50429 6.85355 6.98387 7.12178 7.19150 7.57180 7.59019 7.66509 7.89390 8.02219 8.04846 8.30003 8.47494 8.67613 8.77621 8.90013 10.16453 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.004187 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.516920 B = 6685.409711 C = 9159.502334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.068 3.932 3 N -0.484 5.484 4 C 0.213 3.787 5 C -0.022 4.022 6 C -0.096 4.096 7 C -0.149 4.149 8 C -0.145 4.145 9 O -0.185 6.185 10 C -0.101 4.101 11 C 0.588 3.412 12 O -0.514 6.514 13 N -0.618 5.618 14 C 0.014 3.986 15 C -0.090 4.090 16 C -0.216 4.216 17 C -0.116 4.116 18 C -0.139 4.139 19 C 0.101 3.899 20 C -0.470 4.470 21 H 0.074 0.926 22 C 0.075 3.925 23 N -0.805 5.805 24 Si 0.913 3.087 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.265 1.265 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.408 0.592 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.066 15.632 -0.620 15.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.056 4.056 3 N -0.214 5.214 4 C 0.007 3.993 5 C -0.060 4.060 6 C -0.115 4.115 7 C -0.206 4.206 8 C -0.203 4.203 9 O -0.072 6.072 10 C -0.156 4.156 11 C 0.374 3.626 12 O -0.393 6.393 13 N -0.259 5.259 14 C -0.079 4.079 15 C -0.110 4.110 16 C -0.236 4.236 17 C -0.135 4.135 18 C -0.159 4.159 19 C 0.097 3.903 20 C -0.500 4.500 21 H 0.092 0.908 22 C -0.141 4.141 23 N -0.431 5.431 24 Si 0.737 3.263 25 H -0.190 1.190 26 H -0.202 1.202 27 H -0.190 1.190 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.244 0.756 41 H 0.129 0.871 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.150 0.850 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.276 15.811 -0.643 15.876 hybrid contribution 1.575 -0.454 0.208 1.653 sum 2.851 15.357 -0.435 15.625 Atomic orbital electron populations 1.20346 0.85433 1.04189 1.03466 1.21997 0.98226 0.86387 0.99007 1.70299 1.00281 1.31058 1.19755 1.26373 0.95539 0.79483 0.97884 1.20333 0.90312 0.96110 0.99275 1.21149 0.96187 1.00210 0.93947 1.21881 0.98356 1.00310 1.00081 1.21816 0.96201 0.99854 1.02383 1.84481 1.29997 1.23522 1.69171 1.23199 0.80991 0.96596 1.14835 1.16386 0.86143 0.81115 0.79002 1.90805 1.15729 1.81195 1.51601 1.42741 1.09786 1.04906 1.68465 1.17805 1.00499 0.82736 1.06898 1.20664 0.95911 0.95427 0.98981 1.20375 1.01213 0.93453 1.08542 1.20575 0.96042 0.97391 0.99492 1.21193 0.95222 0.96971 1.02516 1.17452 0.91944 0.91317 0.89549 1.19285 0.95904 1.00981 1.33859 0.90789 1.25848 1.00953 0.94191 0.93158 1.69747 1.32604 1.05054 1.35730 0.86288 0.80594 0.79179 0.80210 1.19004 1.20248 1.19011 0.90303 0.88515 0.90871 0.87443 0.88512 0.90429 0.92072 0.92624 0.92270 0.92077 0.92249 0.92288 0.75633 0.87097 0.88952 0.89145 0.85047 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 9.87 36.01 0.36 -0.71 16 2 C 0.07 1.10 7.16 -82.45 -0.59 0.51 16 3 N -0.48 -7.22 10.53 -7.06 -0.07 -7.30 16 4 C 0.21 2.91 6.79 -12.79 -0.09 2.82 16 5 C -0.02 -0.21 5.32 -27.89 -0.15 -0.35 16 6 C -0.10 -0.84 2.91 -90.62 -0.26 -1.10 16 7 C -0.15 -1.38 9.00 37.16 0.33 -1.05 16 8 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 9 O -0.19 -2.98 10.58 4.37 0.05 -2.94 16 10 C -0.10 -1.78 7.18 -36.85 -0.26 -2.05 16 11 C 0.59 11.89 7.62 -12.87 -0.10 11.79 16 12 O -0.51 -11.16 12.20 5.19 0.06 -11.10 16 13 N -0.62 -13.19 4.95 -10.67 -0.05 -13.24 16 14 C 0.01 0.34 6.33 -83.22 -0.53 -0.19 16 15 C -0.09 -2.12 8.68 -39.43 -0.34 -2.47 16 16 C -0.22 -4.92 10.04 -39.36 -0.39 -5.31 16 17 C -0.12 -2.70 9.97 -39.98 -0.40 -3.10 16 18 C -0.14 -3.53 8.61 -39.28 -0.34 -3.87 16 19 C 0.10 2.60 5.56 -106.64 -0.59 2.00 16 20 C -0.47 -11.79 8.22 -37.87 -0.31 -12.10 16 21 H 0.07 1.79 7.63 -52.49 -0.40 1.39 16 22 C 0.07 1.80 5.42 -17.32 -0.09 1.70 16 23 N -0.80 -19.98 10.62 55.55 0.59 -19.39 16 24 Si 0.91 18.06 29.56 -169.99 -5.03 13.04 16 25 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 26 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 27 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.10 1.47 6.47 -51.93 -0.34 1.13 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.71 6.81 -51.93 -0.35 0.36 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.41 8.17 7.90 -40.82 -0.32 7.84 16 41 H 0.11 2.56 6.19 -52.49 -0.32 2.23 16 42 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 44 H 0.13 3.43 6.15 -52.49 -0.32 3.11 16 45 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -28.40 374.62 -8.50 -36.90 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -6.27 Total: 12.49 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -3.42 Total: -14.11 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.46 Total: -39.93 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.11 Total: -14.04 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.40 -8.50 -36.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344356446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.432 kcal (2) G-P(sol) polarization free energy of solvation -28.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds