Wall clock time and date at job start Tue Mar 31 2020 15:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33682 * 126.27368 * 2 1 4 4 C 1.30623 * 108.99824 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.42257 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47002 * 89.99660 * 5 4 3 7 7 C 1.53003 * 109.47508 * 295.00367 * 6 5 4 8 8 C 1.53003 * 109.46654 * 175.00297 * 6 5 4 9 9 O 1.33675 * 109.16230 * 0.24214 * 4 3 2 10 10 C 1.35352 * 107.68482 * 359.61360 * 9 4 3 11 11 C 1.46651 * 126.64893 * 180.18357 * 10 9 4 12 12 O 1.21702 * 120.00008 * 180.23591 * 11 10 9 13 13 N 1.34775 * 120.00390 * 0.22647 * 11 10 9 14 14 C 1.38973 * 120.00367 * 175.79622 * 13 11 10 15 15 C 1.38692 * 120.28915 * 34.59364 * 14 13 11 16 16 C 1.38195 * 120.03486 * 179.97438 * 15 14 13 17 17 C 1.38885 * 120.61865 * 0.02562 * 16 15 14 18 18 C 1.36459 * 120.58695 * 0.02562 * 17 16 15 19 19 C 1.40740 * 119.94243 * 359.70204 * 18 17 16 20 20 C 1.41051 * 120.29979 * 180.29737 * 19 18 17 21 21 H 1.07996 * 119.99773 * 214.95039 * 20 19 18 22 22 C 1.39958 * 120.00125 * 34.95545 * 20 19 18 23 23 N 1.30854 * 120.00038 * 355.63143 * 22 20 19 24 24 Si 1.86802 * 120.00221 * 175.63790 * 22 20 19 25 25 H 1.48501 * 109.47095 * 59.99542 * 24 22 20 26 26 H 1.48491 * 109.47324 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.46798 * 300.00157 * 24 22 20 28 28 H 1.08999 * 109.47150 * 89.97268 * 1 2 3 29 29 H 1.08993 * 109.47299 * 209.97283 * 1 2 3 30 30 H 1.09002 * 109.47043 * 329.97553 * 1 2 3 31 31 H 1.09003 * 109.46576 * 329.99890 * 5 4 3 32 32 H 1.09000 * 109.47246 * 210.00158 * 5 4 3 33 33 H 1.08994 * 109.47057 * 55.01061 * 6 5 4 34 34 H 1.08997 * 109.46639 * 59.99967 * 7 6 5 35 35 H 1.09000 * 109.46995 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.46801 * 300.00183 * 7 6 5 37 37 H 1.09011 * 109.46821 * 180.02562 * 8 6 5 38 38 H 1.08993 * 109.47428 * 299.99685 * 8 6 5 39 39 H 1.08999 * 109.47199 * 60.00757 * 8 6 5 40 40 H 0.96998 * 119.99747 * 355.81014 * 13 11 10 41 41 H 1.08000 * 119.98142 * 359.97438 * 15 14 13 42 42 H 1.07997 * 119.69071 * 179.97438 * 16 15 14 43 43 H 1.08000 * 119.70547 * 179.97438 * 17 16 15 44 44 H 1.07995 * 120.02479 * 179.97438 * 18 17 16 45 45 H 0.96999 * 119.99958 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0777 0.0000 4 6 3.5453 0.6898 -0.0006 5 6 4.7440 1.6031 -0.0013 6 6 5.1503 1.9124 1.4409 7 6 4.0364 2.7072 2.1254 8 6 6.4394 2.7366 1.4419 9 8 3.5893 -0.6462 -0.0063 10 6 2.3140 -1.0996 -0.0007 11 6 1.8834 -2.5015 -0.0001 12 8 0.6972 -2.7737 0.0010 13 7 2.8011 -3.4884 -0.0009 14 6 2.3955 -4.8147 0.0879 15 6 1.2128 -5.2259 -0.5085 16 6 0.8147 -6.5461 -0.4174 17 6 1.5890 -7.4726 0.2689 18 6 2.7566 -7.0955 0.8660 19 6 3.1879 -5.7583 0.7834 20 6 4.3967 -5.3616 1.3925 21 1 4.4828 -4.3789 1.8319 22 6 5.4846 -6.2415 1.4272 23 7 5.3543 -7.4613 0.9718 24 14 7.1225 -5.6747 2.1239 25 1 6.9438 -5.2689 3.5412 26 1 8.1041 -6.7862 2.0477 27 1 7.6213 -4.5183 1.3372 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 4.4933 2.5311 -0.5152 32 1 5.5721 1.1153 -0.5155 33 1 5.3151 0.9796 1.9800 34 1 3.1181 2.1200 2.1246 35 1 4.3261 2.9279 3.1528 36 1 3.8716 3.6401 1.5863 37 1 6.7292 2.9566 2.4695 38 1 7.2330 2.1704 0.9544 39 1 6.2746 3.6695 0.9029 40 1 3.7449 -3.2731 -0.0632 41 1 0.6026 -4.5139 -1.0443 42 1 -0.1075 -6.8601 -0.8835 43 1 1.2636 -8.5006 0.3312 44 1 3.3514 -7.8234 1.3976 45 1 6.1083 -8.0710 0.9955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344356446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:23 Heat of formation + Delta-G solvation = -28.445553 kcal Electronic energy + Delta-G solvation = -27632.122759 eV Core-core repulsion = 23807.628975 eV Total energy + Delta-G solvation = -3824.493785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.59537 -41.21613 -39.04362 -37.56315 -36.55596 -35.52880 -35.47872 -32.92652 -31.53718 -30.59315 -29.61752 -28.22261 -27.99744 -27.02985 -24.20272 -23.19047 -22.94188 -22.23938 -21.37580 -20.99659 -19.53429 -19.03726 -18.11939 -18.03180 -17.11261 -16.89586 -16.31151 -16.09840 -16.02836 -15.71775 -15.20144 -14.96907 -14.75331 -14.48758 -14.31443 -14.27560 -14.09781 -13.71494 -13.65483 -13.33515 -13.08995 -13.00806 -12.87658 -12.79343 -12.75495 -12.28592 -12.17282 -12.13842 -12.02581 -11.89393 -11.77724 -11.67262 -11.63382 -11.20063 -11.06953 -10.77387 -9.97186 -9.27101 -8.86423 -8.49820 -6.41517 -0.37044 0.84008 1.04463 1.24901 1.33442 1.38523 1.48570 1.51288 1.98463 2.20248 2.24075 2.76423 2.78829 3.57465 3.60005 3.66999 3.82024 3.92387 4.06320 4.31040 4.37242 4.48595 4.57020 4.59909 4.62575 4.66159 4.71653 4.73230 4.83235 4.85052 4.89952 5.01053 5.04316 5.07635 5.14902 5.24110 5.26961 5.29543 5.37779 5.40762 5.44817 5.73075 5.80052 6.04740 6.14150 6.20603 6.39797 6.56771 6.64403 6.89193 6.92433 7.11784 8.37715 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.004187 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.516920 B = 6685.409711 C = 9159.502334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.080 3.920 3 N -0.495 5.495 4 C 0.232 3.768 5 C -0.025 4.025 6 C -0.093 4.093 7 C -0.148 4.148 8 C -0.140 4.140 9 O -0.195 6.195 10 C -0.137 4.137 11 C 0.592 3.408 12 O -0.535 6.535 13 N -0.623 5.623 14 C 0.009 3.991 15 C -0.102 4.102 16 C -0.215 4.215 17 C -0.119 4.119 18 C -0.162 4.162 19 C 0.072 3.928 20 C -0.493 4.493 21 H 0.072 0.928 22 C 0.036 3.964 23 N -0.833 5.833 24 Si 0.981 3.019 25 H -0.264 1.264 26 H -0.269 1.269 27 H -0.257 1.257 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.131 0.869 32 H 0.117 0.883 33 H 0.060 0.940 34 H 0.033 0.967 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.411 0.589 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.197 17.831 -0.892 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.044 4.044 3 N -0.224 5.224 4 C 0.027 3.973 5 C -0.062 4.062 6 C -0.113 4.113 7 C -0.205 4.205 8 C -0.197 4.197 9 O -0.083 6.083 10 C -0.192 4.192 11 C 0.380 3.620 12 O -0.415 6.415 13 N -0.264 5.264 14 C -0.085 4.085 15 C -0.122 4.122 16 C -0.235 4.235 17 C -0.138 4.138 18 C -0.182 4.182 19 C 0.068 3.932 20 C -0.524 4.524 21 H 0.090 0.910 22 C -0.178 4.178 23 N -0.460 5.460 24 Si 0.802 3.198 25 H -0.189 1.189 26 H -0.194 1.194 27 H -0.181 1.181 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.149 0.851 32 H 0.135 0.865 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.247 0.753 41 H 0.132 0.868 42 H 0.139 0.861 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.391 18.025 -0.922 18.206 hybrid contribution 1.170 -1.012 0.277 1.572 sum 3.561 17.013 -0.645 17.393 Atomic orbital electron populations 1.20407 0.84100 1.04439 1.04368 1.22412 0.99233 0.86226 0.96528 1.70394 1.00687 1.30360 1.21005 1.27482 0.96608 0.78973 0.94282 1.20736 0.89137 0.96179 1.00166 1.21137 0.97181 0.99820 0.93117 1.21873 0.97258 1.00430 1.00934 1.21781 0.94862 1.00099 1.02971 1.84472 1.29330 1.24730 1.69747 1.22656 0.82073 0.95545 1.18888 1.16594 0.85706 0.81929 0.77810 1.90772 1.16383 1.82012 1.52345 1.42709 1.10194 1.04293 1.69193 1.17963 1.00441 0.83822 1.06284 1.20857 0.95989 0.96089 0.99305 1.20721 1.01979 0.92963 1.07790 1.20831 0.95285 0.98846 0.98804 1.21212 0.96260 0.96947 1.03803 1.17772 0.92838 0.91999 0.90553 1.19446 0.96585 1.01398 1.34931 0.90956 1.26669 1.04078 0.94014 0.93016 1.69820 1.33848 1.06012 1.36305 0.85256 0.76154 0.79053 0.79345 1.18856 1.19351 1.18089 0.88945 0.90079 0.88691 0.85135 0.86494 0.92134 0.94794 0.91975 0.91011 0.91809 0.91580 0.90834 0.75276 0.86769 0.86075 0.86573 0.86428 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.04 9.87 71.24 0.70 -1.34 16 2 C 0.08 2.54 7.16 41.85 0.30 2.84 16 3 N -0.49 -14.09 10.53 -291.01 -3.06 -17.15 16 4 C 0.23 6.00 6.79 88.29 0.60 6.60 16 5 C -0.02 -0.39 5.32 29.85 0.16 -0.23 16 6 C -0.09 -1.43 2.91 -10.79 -0.03 -1.46 16 7 C -0.15 -2.47 9.00 71.98 0.65 -1.82 16 8 C -0.14 -1.43 9.19 71.98 0.66 -0.76 16 9 O -0.20 -6.22 10.58 -7.28 -0.08 -6.30 16 10 C -0.14 -4.87 7.18 24.04 0.17 -4.70 16 11 C 0.59 24.54 7.62 86.44 0.66 25.20 16 12 O -0.53 -23.74 12.20 -4.36 -0.05 -23.79 16 13 N -0.62 -27.41 4.95 -305.88 -1.51 -28.92 16 14 C 0.01 0.45 6.33 38.92 0.25 0.69 16 15 C -0.10 -4.90 8.68 22.37 0.19 -4.71 16 16 C -0.22 -9.70 10.04 22.41 0.22 -9.48 16 17 C -0.12 -5.55 9.97 22.01 0.22 -5.33 16 18 C -0.16 -8.47 8.61 22.47 0.19 -8.27 16 19 C 0.07 3.82 5.56 -21.17 -0.12 3.70 16 20 C -0.49 -25.49 8.22 23.38 0.19 -25.29 16 21 H 0.07 3.62 7.63 -2.91 -0.02 3.60 16 22 C 0.04 1.74 5.42 85.26 0.46 2.20 16 23 N -0.83 -42.15 10.62 21.83 0.23 -41.92 16 24 Si 0.98 36.95 29.56 68.60 2.03 38.97 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 26 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 27 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.08 2.47 6.47 -2.39 -0.02 2.45 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.03 0.75 6.81 -2.39 -0.02 0.73 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.41 17.08 7.90 -92.71 -0.73 16.34 16 41 H 0.11 5.33 6.19 -2.91 -0.02 5.31 16 42 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 43 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 44 H 0.12 6.38 6.15 -2.91 -0.02 6.36 16 45 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 Total: -1.00 -62.62 374.62 3.33 -59.30 By element: Atomic # 1 Polarization: 41.68 SS G_CDS: 0.29 Total: 41.97 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 5.49 Total: -22.16 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -4.34 Total: -87.99 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.13 Total: -30.09 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.97 kcal Total: -62.62 3.33 -59.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344356446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.850 kcal (2) G-P(sol) polarization free energy of solvation -62.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds