Wall clock time and date at job start Tue Mar 31 2020 14:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38252 * 119.99798 * 2 1 4 4 C 1.38213 * 120.00089 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99709 * 359.95359 * 4 3 2 6 6 C 1.38214 * 119.99959 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.99716 * 180.02562 * 6 5 4 8 8 H 1.08999 * 110.53606 * 222.83438 * 7 6 5 9 9 N 1.47318 * 110.60103 * 345.82817 * 7 6 5 10 10 C 1.34521 * 106.62143 * 118.30572 * 9 7 6 11 11 O 1.21535 * 123.77629 * 180.20865 * 10 9 7 12 12 N 1.33796 * 112.45651 * 0.38268 * 10 9 7 13 13 C 1.46499 * 124.17971 * 179.86828 * 12 10 9 14 14 C 1.53007 * 109.47019 * 274.56391 * 13 12 10 15 15 C 1.50704 * 115.54856 * 304.08984 * 14 13 12 16 16 H 1.07991 * 120.00242 * 95.40019 * 15 14 13 17 17 C 1.37883 * 119.99453 * 275.39799 * 15 14 13 18 18 N 1.31514 * 119.99478 * 189.57449 * 17 15 14 19 19 Si 1.86797 * 120.00087 * 9.57612 * 17 15 14 20 20 H 1.48488 * 109.47233 * 85.42951 * 19 17 15 21 21 H 1.48504 * 109.46654 * 205.42942 * 19 17 15 22 22 H 1.48498 * 109.47066 * 325.42405 * 19 17 15 23 23 C 1.52998 * 117.49507 * 89.75232 * 14 13 12 24 24 C 1.52995 * 117.49912 * 158.41286 * 14 13 12 25 25 C 1.34769 * 111.64594 * 359.59456 * 12 10 9 26 26 O 1.21229 * 127.16114 * 180.26030 * 25 12 10 27 27 C 1.38208 * 120.00047 * 180.16108 * 2 1 3 28 28 C 1.50707 * 120.00133 * 0.04506 * 27 2 1 29 29 H 1.09000 * 109.47155 * 90.00585 * 1 2 3 30 30 H 1.09003 * 109.47048 * 210.00262 * 1 2 3 31 31 H 1.08997 * 109.47641 * 330.00648 * 1 2 3 32 32 H 1.08000 * 120.00037 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.99949 * 179.97438 * 4 3 2 34 34 H 1.07997 * 119.99730 * 180.02562 * 5 4 3 35 35 H 0.97005 * 126.68852 * 298.48996 * 9 7 6 36 36 H 1.09002 * 109.47477 * 154.56388 * 13 12 10 37 37 H 1.09005 * 109.47194 * 34.55980 * 13 12 10 38 38 H 0.97003 * 119.99790 * 180.02562 * 18 17 15 39 39 H 1.09008 * 117.49909 * 215.00488 * 23 14 13 40 40 H 1.08994 * 117.50396 * 0.02998 * 23 14 13 41 41 H 1.08997 * 117.50074 * 359.97438 * 24 14 13 42 42 H 1.09006 * 117.49687 * 144.97688 * 24 14 13 43 43 H 1.08994 * 109.47058 * 270.18817 * 28 27 2 44 44 H 1.09001 * 109.47254 * 30.19205 * 28 27 2 45 45 H 1.09002 * 109.46655 * 150.18599 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 3.5806 -1.1969 0.0014 7 6 4.3342 -2.5020 0.0025 8 1 3.8769 -3.2081 -0.6906 9 7 5.7511 -2.2827 -0.3359 10 6 6.4677 -2.6850 0.7290 11 8 7.6809 -2.6365 0.7844 12 7 5.6960 -3.1479 1.7191 13 6 6.2090 -3.6542 2.9945 14 6 6.5741 -5.1327 2.8466 15 6 5.4658 -6.0303 2.3597 16 1 5.3857 -6.2682 1.3094 17 6 4.5542 -6.5478 3.2554 18 7 3.7056 -7.4748 2.8681 19 14 4.5244 -5.9320 5.0187 20 1 3.6848 -4.7102 5.1023 21 1 3.9574 -6.9837 5.9006 22 1 5.9076 -5.6130 5.4550 23 6 8.0001 -5.4673 2.4043 24 6 7.5682 -5.7187 3.8512 25 6 4.3880 -3.0856 1.4004 26 8 3.4496 -3.4251 2.0888 27 6 2.1981 -1.1969 -0.0034 28 6 1.4446 -2.5021 -0.0081 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6582 2.1326 -0.0004 33 1 4.1203 2.1327 -0.0010 34 1 5.3517 0.0001 -0.0001 35 1 6.0992 -1.9167 -1.1641 36 1 5.4442 -3.5439 3.7633 37 1 7.0956 -3.0878 3.2800 38 1 3.0639 -7.8387 3.4981 39 1 8.1366 -6.3368 1.7612 40 1 8.6782 -4.6343 2.2192 41 1 7.9624 -5.0510 4.6172 42 1 7.4203 -6.7535 4.1603 43 1 1.2593 -2.8183 1.0184 44 1 0.4940 -2.3710 -0.5251 45 1 2.0356 -3.2609 -0.5211 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348752604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:35 Heat of formation + Delta-G solvation = 13.891807 kcal Electronic energy + Delta-G solvation = -29169.781637 eV Core-core repulsion = 25347.123738 eV Total energy + Delta-G solvation = -3822.657899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.06981 -39.64090 -37.93583 -37.03432 -35.73154 -34.07287 -33.39995 -32.13325 -32.00035 -28.01549 -27.62121 -26.65952 -26.12113 -25.31612 -22.65396 -21.56111 -21.27610 -20.75250 -20.28137 -18.89588 -17.64293 -16.94840 -16.54535 -16.23480 -15.75144 -15.59300 -14.88249 -14.83868 -14.70716 -14.44447 -14.25132 -13.72221 -13.63022 -13.42021 -13.15802 -12.99860 -12.77737 -12.64085 -12.56942 -12.40453 -12.00120 -11.92286 -11.88453 -11.15385 -11.08394 -10.97712 -10.75417 -10.60790 -10.44281 -10.28550 -9.76812 -9.67364 -9.35026 -9.02882 -8.84040 -8.67397 -8.58500 -8.48666 -8.39920 -6.07291 -4.09269 1.15248 1.28468 2.21850 2.71223 3.36812 3.41060 3.43983 3.46378 3.53479 3.69933 4.40432 4.49117 4.52373 4.72480 4.75620 4.92647 4.99775 5.05273 5.18938 5.23342 5.28537 5.46824 5.50953 5.56223 5.64565 5.69631 5.81251 5.82937 5.89338 6.02173 6.03382 6.04360 6.13842 6.28416 6.31973 6.38481 6.41427 6.51690 6.56528 6.61521 6.81345 6.90124 7.02685 7.06609 7.22472 7.60581 7.78908 8.01571 8.51064 8.59024 8.93348 9.58118 11.04543 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014612 B = 0.004829 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.757159 B = 5797.013330 C = 6965.613611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.089 4.089 3 C -0.112 4.112 4 C -0.125 4.125 5 C -0.103 4.103 6 C -0.094 4.094 7 C 0.135 3.865 8 H 0.132 0.868 9 N -0.729 5.729 10 C 0.707 3.293 11 O -0.548 6.548 12 N -0.550 5.550 13 C 0.153 3.847 14 C -0.027 4.027 15 C -0.486 4.486 16 H 0.070 0.930 17 C 0.093 3.907 18 N -0.892 5.892 19 Si 0.857 3.143 20 H -0.273 1.273 21 H -0.293 1.293 22 H -0.246 1.246 23 C -0.173 4.173 24 C -0.177 4.177 25 C 0.537 3.463 26 O -0.440 6.440 27 C -0.054 4.054 28 C -0.126 4.126 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.435 0.565 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.264 0.736 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.518 16.506 -7.106 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.130 4.130 4 C -0.143 4.143 5 C -0.122 4.122 6 C -0.096 4.096 7 C 0.025 3.975 8 H 0.149 0.851 9 N -0.394 5.394 10 C 0.409 3.591 11 O -0.422 6.422 12 N -0.294 5.294 13 C 0.033 3.967 14 C -0.028 4.028 15 C -0.523 4.523 16 H 0.088 0.912 17 C -0.110 4.110 18 N -0.529 5.529 19 Si 0.684 3.316 20 H -0.198 1.198 21 H -0.219 1.219 22 H -0.170 1.170 23 C -0.211 4.211 24 C -0.215 4.215 25 C 0.321 3.679 26 O -0.307 6.307 27 C -0.054 4.054 28 C -0.182 4.182 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.278 0.722 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.528 16.142 -6.494 17.753 hybrid contribution 0.035 0.346 0.503 0.611 sum -3.493 16.488 -5.992 17.887 Atomic orbital electron populations 1.20818 0.91063 1.03047 1.02252 1.19729 0.96118 0.92312 1.00763 1.21040 0.94250 0.97378 1.00321 1.21039 0.94245 0.97716 1.01339 1.20954 1.00131 0.91559 0.99528 1.19392 0.93126 0.93153 1.03904 1.20869 0.83245 0.96090 0.97287 0.85073 1.45458 1.05754 1.69567 1.18585 1.15830 0.85332 0.77572 0.80406 1.90941 1.10186 1.60192 1.80917 1.46001 1.08073 1.57503 1.17853 1.21454 0.98475 0.95820 0.80999 1.19716 0.90827 0.91294 1.00983 1.20018 1.09416 1.27381 0.95486 0.91203 1.24828 0.94603 0.93288 0.98330 1.69900 1.20720 1.26245 1.35990 0.87219 0.79832 0.79211 0.85374 1.19848 1.21948 1.17006 1.22891 0.98886 1.02201 0.97073 1.22926 1.05529 1.01315 0.91734 1.20237 0.83091 0.77186 0.87352 1.90791 1.39441 1.44347 1.56114 1.19604 0.92340 0.95623 0.97844 1.20995 0.99617 0.93443 1.04118 0.91191 0.90937 0.91671 0.86118 0.85995 0.85766 0.72180 0.90021 0.90968 0.92662 0.89944 0.90205 0.91098 0.89392 0.89231 0.91368 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.19 36.01 0.33 -0.67 16 2 C -0.09 -0.99 5.88 -104.63 -0.62 -1.61 16 3 C -0.11 -1.14 9.70 -39.59 -0.38 -1.53 16 4 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 5 C -0.10 -1.23 9.37 -39.58 -0.37 -1.60 16 6 C -0.09 -1.25 5.17 -104.63 -0.54 -1.79 16 7 C 0.13 1.97 3.26 -69.35 -0.23 1.75 16 8 H 0.13 1.76 6.60 -51.93 -0.34 1.42 16 9 N -0.73 -10.10 4.81 -60.32 -0.29 -10.39 16 10 C 0.71 12.87 8.62 -88.02 -0.76 12.12 16 11 O -0.55 -11.16 17.27 5.33 0.09 -11.06 16 12 N -0.55 -10.98 2.40 -120.72 -0.29 -11.27 16 13 C 0.15 3.26 5.37 -4.04 -0.02 3.24 16 14 C -0.03 -0.62 1.09 -155.66 -0.17 -0.79 16 15 C -0.49 -13.35 8.70 -34.44 -0.30 -13.65 16 16 H 0.07 2.14 8.06 -52.49 -0.42 1.71 16 17 C 0.09 2.65 5.46 -17.82 -0.10 2.55 16 18 N -0.89 -26.99 13.96 55.43 0.77 -26.21 16 19 Si 0.86 21.38 25.46 -169.99 -4.33 17.06 16 20 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.25 -5.64 5.28 56.52 0.30 -5.34 16 23 C -0.17 -3.73 9.93 -26.69 -0.27 -4.00 16 24 C -0.18 -3.81 7.12 -26.70 -0.19 -4.00 16 25 C 0.54 10.45 7.11 -10.55 -0.08 10.38 16 26 O -0.44 -9.91 16.34 5.60 0.09 -9.82 16 27 C -0.05 -0.68 5.88 -104.62 -0.62 -1.30 16 28 C -0.13 -1.58 8.09 36.01 0.29 -1.29 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.64 6.72 -51.93 -0.35 0.29 16 31 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.12 1.40 7.08 -52.49 -0.37 1.03 16 35 H 0.43 4.58 8.96 -40.82 -0.37 4.22 16 36 H 0.08 1.80 6.13 -51.93 -0.32 1.48 16 37 H 0.07 1.40 7.93 -51.93 -0.41 0.99 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.08 1.82 8.14 -51.92 -0.42 1.39 16 40 H 0.08 1.65 7.86 -51.93 -0.41 1.24 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.09 1.96 7.91 -51.93 -0.41 1.55 16 43 H 0.09 1.32 7.43 -51.93 -0.39 0.93 16 44 H 0.07 0.69 6.72 -51.93 -0.35 0.34 16 45 H 0.07 0.88 6.21 -51.93 -0.32 0.56 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -33.21 364.26 -9.10 -42.31 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.23 Total: 7.79 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -4.41 Total: -3.90 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.19 Total: -47.86 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.18 Total: -20.88 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.33 Total: 17.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.21 -9.10 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348752604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.199 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds