Wall clock time and date at job start Tue Mar 31 2020 14:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38252 * 119.99798 * 2 1 4 4 C 1.38213 * 120.00089 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99709 * 359.95359 * 4 3 2 6 6 C 1.38214 * 119.99959 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.99716 * 180.02562 * 6 5 4 8 8 H 1.08999 * 110.53606 * 222.83438 * 7 6 5 9 9 N 1.47318 * 110.60103 * 345.82817 * 7 6 5 10 10 C 1.34521 * 106.62143 * 118.30572 * 9 7 6 11 11 O 1.21535 * 123.77629 * 180.20865 * 10 9 7 12 12 N 1.33796 * 112.45651 * 0.38268 * 10 9 7 13 13 C 1.46499 * 124.17971 * 179.86828 * 12 10 9 14 14 C 1.53007 * 109.47019 * 274.56391 * 13 12 10 15 15 C 1.50704 * 115.54856 * 304.08984 * 14 13 12 16 16 H 1.07991 * 120.00242 * 95.40019 * 15 14 13 17 17 C 1.37883 * 119.99453 * 275.39799 * 15 14 13 18 18 N 1.31514 * 119.99478 * 189.57449 * 17 15 14 19 19 Si 1.86797 * 120.00087 * 9.57612 * 17 15 14 20 20 H 1.48488 * 109.47233 * 85.42951 * 19 17 15 21 21 H 1.48504 * 109.46654 * 205.42942 * 19 17 15 22 22 H 1.48498 * 109.47066 * 325.42405 * 19 17 15 23 23 C 1.52998 * 117.49507 * 89.75232 * 14 13 12 24 24 C 1.52995 * 117.49912 * 158.41286 * 14 13 12 25 25 C 1.34769 * 111.64594 * 359.59456 * 12 10 9 26 26 O 1.21229 * 127.16114 * 180.26030 * 25 12 10 27 27 C 1.38208 * 120.00047 * 180.16108 * 2 1 3 28 28 C 1.50707 * 120.00133 * 0.04506 * 27 2 1 29 29 H 1.09000 * 109.47155 * 90.00585 * 1 2 3 30 30 H 1.09003 * 109.47048 * 210.00262 * 1 2 3 31 31 H 1.08997 * 109.47641 * 330.00648 * 1 2 3 32 32 H 1.08000 * 120.00037 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.99949 * 179.97438 * 4 3 2 34 34 H 1.07997 * 119.99730 * 180.02562 * 5 4 3 35 35 H 0.97005 * 126.68852 * 298.48996 * 9 7 6 36 36 H 1.09002 * 109.47477 * 154.56388 * 13 12 10 37 37 H 1.09005 * 109.47194 * 34.55980 * 13 12 10 38 38 H 0.97003 * 119.99790 * 180.02562 * 18 17 15 39 39 H 1.09008 * 117.49909 * 215.00488 * 23 14 13 40 40 H 1.08994 * 117.50396 * 0.02998 * 23 14 13 41 41 H 1.08997 * 117.50074 * 359.97438 * 24 14 13 42 42 H 1.09006 * 117.49687 * 144.97688 * 24 14 13 43 43 H 1.08994 * 109.47058 * 270.18817 * 28 27 2 44 44 H 1.09001 * 109.47254 * 30.19205 * 28 27 2 45 45 H 1.09002 * 109.46655 * 150.18599 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 3.5806 -1.1969 0.0014 7 6 4.3342 -2.5020 0.0025 8 1 3.8769 -3.2081 -0.6906 9 7 5.7511 -2.2827 -0.3359 10 6 6.4677 -2.6850 0.7290 11 8 7.6809 -2.6365 0.7844 12 7 5.6960 -3.1479 1.7191 13 6 6.2090 -3.6542 2.9945 14 6 6.5741 -5.1327 2.8466 15 6 5.4658 -6.0303 2.3597 16 1 5.3857 -6.2682 1.3094 17 6 4.5542 -6.5478 3.2554 18 7 3.7056 -7.4748 2.8681 19 14 4.5244 -5.9320 5.0187 20 1 3.6848 -4.7102 5.1023 21 1 3.9574 -6.9837 5.9006 22 1 5.9076 -5.6130 5.4550 23 6 8.0001 -5.4673 2.4043 24 6 7.5682 -5.7187 3.8512 25 6 4.3880 -3.0856 1.4004 26 8 3.4496 -3.4251 2.0888 27 6 2.1981 -1.1969 -0.0034 28 6 1.4446 -2.5021 -0.0081 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6582 2.1326 -0.0004 33 1 4.1203 2.1327 -0.0010 34 1 5.3517 0.0001 -0.0001 35 1 6.0992 -1.9167 -1.1641 36 1 5.4442 -3.5439 3.7633 37 1 7.0956 -3.0878 3.2800 38 1 3.0639 -7.8387 3.4981 39 1 8.1366 -6.3368 1.7612 40 1 8.6782 -4.6343 2.2192 41 1 7.9624 -5.0510 4.6172 42 1 7.4203 -6.7535 4.1603 43 1 1.2593 -2.8183 1.0184 44 1 0.4940 -2.3710 -0.5251 45 1 2.0356 -3.2609 -0.5211 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348752604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:34 Heat of formation + Delta-G solvation = -6.498589 kcal Electronic energy + Delta-G solvation = -29170.665831 eV Core-core repulsion = 25347.123738 eV Total energy + Delta-G solvation = -3823.542093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.48057 -40.61209 -39.47722 -38.76742 -37.18346 -35.50055 -34.26801 -34.20844 -33.13081 -29.27686 -28.90935 -27.88101 -27.33461 -27.01813 -24.05105 -23.30264 -22.52588 -21.69017 -21.56060 -20.74384 -19.07588 -18.38815 -18.15628 -17.63575 -16.93225 -16.80120 -16.61868 -16.39216 -16.16205 -15.69415 -15.35214 -15.27419 -14.91690 -14.81682 -14.66465 -14.44696 -14.05961 -13.86487 -13.70744 -13.52076 -13.41989 -13.05263 -12.87021 -12.77010 -12.70885 -12.29980 -12.23700 -12.05361 -11.93794 -11.78026 -11.67045 -11.25628 -10.94051 -10.73116 -10.60899 -10.34782 -10.33070 -9.61985 -9.46519 -8.28277 -6.32866 0.22593 0.41550 0.74230 1.31083 1.36491 1.40760 1.46959 2.06775 2.16796 2.39433 2.68483 3.09451 3.14480 3.22341 3.40817 3.74496 3.92328 3.96593 4.03775 4.12034 4.17214 4.33641 4.34586 4.38098 4.44510 4.49772 4.64385 4.71930 4.78305 4.78785 4.83248 4.85728 4.89847 4.93006 5.00662 5.07204 5.23894 5.28363 5.36440 5.49456 5.51642 5.53369 5.68366 5.70206 5.84075 6.05852 6.16053 6.27797 6.53747 6.71049 7.17345 7.37183 8.87107 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014612 B = 0.004829 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.757159 B = 5797.013330 C = 6965.613611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.109 4.109 4 C -0.123 4.123 5 C -0.111 4.111 6 C -0.109 4.109 7 C 0.149 3.851 8 H 0.141 0.859 9 N -0.703 5.703 10 C 0.706 3.294 11 O -0.569 6.569 12 N -0.561 5.561 13 C 0.155 3.845 14 C -0.050 4.050 15 C -0.474 4.474 16 H 0.021 0.979 17 C 0.042 3.958 18 N -0.941 5.941 19 Si 0.909 3.091 20 H -0.281 1.281 21 H -0.297 1.297 22 H -0.208 1.208 23 C -0.160 4.160 24 C -0.165 4.165 25 C 0.525 3.475 26 O -0.481 6.481 27 C -0.072 4.072 28 C -0.121 4.121 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.129 0.871 35 H 0.452 0.548 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.262 0.738 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.738 19.670 -6.964 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.127 4.127 4 C -0.141 4.141 5 C -0.129 4.129 6 C -0.111 4.111 7 C 0.040 3.960 8 H 0.158 0.842 9 N -0.368 5.368 10 C 0.407 3.593 11 O -0.445 6.445 12 N -0.305 5.305 13 C 0.034 3.966 14 C -0.052 4.052 15 C -0.511 4.511 16 H 0.040 0.960 17 C -0.157 4.157 18 N -0.580 5.580 19 Si 0.734 3.266 20 H -0.208 1.208 21 H -0.223 1.223 22 H -0.130 1.130 23 C -0.197 4.197 24 C -0.203 4.203 25 C 0.312 3.688 26 O -0.350 6.350 27 C -0.072 4.072 28 C -0.178 4.178 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.147 0.853 35 H 0.300 0.700 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.714 19.337 -6.404 20.550 hybrid contribution -0.232 -0.606 0.332 0.729 sum -2.947 18.731 -6.072 19.910 Atomic orbital electron populations 1.20871 0.89429 1.03496 1.03367 1.20058 0.97475 0.92019 0.99942 1.21426 0.94403 0.98135 0.98732 1.21386 0.94636 0.98142 0.99937 1.21082 1.00464 0.91633 0.99747 1.19293 0.93326 0.92512 1.05925 1.20746 0.83653 0.97320 0.94323 0.84176 1.45282 1.05032 1.68324 1.18186 1.15876 0.85072 0.77569 0.80803 1.90921 1.10894 1.61281 1.81406 1.46135 1.08649 1.57608 1.18109 1.21326 0.99137 0.94481 0.81688 1.19654 0.90250 0.91949 1.03346 1.20026 1.10571 1.27383 0.93158 0.96031 1.25561 0.94324 0.93355 1.02453 1.70037 1.22202 1.28338 1.37460 0.86383 0.81631 0.77939 0.80659 1.20770 1.22346 1.12959 1.22813 0.97603 1.02101 0.97200 1.23008 1.03637 1.01361 0.92303 1.21013 0.82484 0.76439 0.88888 1.90760 1.40430 1.46089 1.57756 1.19705 0.92354 0.96168 0.99018 1.20917 1.00776 0.93602 1.02471 0.89649 0.91699 0.90062 0.83207 0.83326 0.85319 0.70016 0.91033 0.88501 0.92881 0.91182 0.88625 0.87701 0.90317 0.92063 0.89123 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.19 71.24 0.65 -1.08 16 2 C -0.09 -1.92 5.88 -19.87 -0.12 -2.04 16 3 C -0.11 -1.87 9.70 22.27 0.22 -1.66 16 4 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 5 C -0.11 -2.42 9.37 22.27 0.21 -2.21 16 6 C -0.11 -2.80 5.17 -19.87 -0.10 -2.91 16 7 C 0.15 4.36 3.26 43.62 0.14 4.51 16 8 H 0.14 3.87 6.60 -2.39 -0.02 3.85 16 9 N -0.70 -18.76 4.81 -463.20 -2.23 -20.99 16 10 C 0.71 25.07 8.62 179.44 1.55 26.62 16 11 O -0.57 -22.30 17.27 -3.83 -0.07 -22.37 16 12 N -0.56 -22.32 2.40 -773.10 -1.85 -24.17 16 13 C 0.16 6.44 5.37 86.38 0.46 6.90 16 14 C -0.05 -2.32 1.09 -52.93 -0.06 -2.38 16 15 C -0.47 -26.83 8.70 25.60 0.22 -26.61 16 16 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 17 C 0.04 2.45 5.46 84.66 0.46 2.91 16 18 N -0.94 -59.44 13.96 21.45 0.30 -59.14 16 19 Si 0.91 44.47 25.46 68.60 1.75 46.22 16 20 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 21 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 22 H -0.21 -8.76 5.28 99.48 0.53 -8.23 16 23 C -0.16 -6.67 9.93 30.62 0.30 -6.36 16 24 C -0.17 -6.69 7.12 30.62 0.22 -6.48 16 25 C 0.52 20.91 7.11 87.94 0.63 21.54 16 26 O -0.48 -22.62 16.34 -2.87 -0.05 -22.66 16 27 C -0.07 -1.79 5.88 -19.87 -0.12 -1.91 16 28 C -0.12 -3.15 8.09 71.24 0.58 -2.58 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.08 6.72 -2.39 -0.02 1.06 16 31 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 32 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.13 2.62 7.08 -2.91 -0.02 2.60 16 35 H 0.45 8.76 8.96 -92.70 -0.83 7.93 16 36 H 0.07 3.09 6.13 -2.39 -0.01 3.08 16 37 H 0.10 3.51 7.93 -2.38 -0.02 3.49 16 38 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 39 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 40 H 0.10 3.71 7.86 -2.39 -0.02 3.69 16 41 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 42 H 0.08 3.35 7.91 -2.38 -0.02 3.33 16 43 H 0.06 1.93 7.43 -2.39 -0.02 1.91 16 44 H 0.09 1.83 6.72 -2.39 -0.02 1.82 16 45 H 0.06 1.61 6.21 -2.39 -0.01 1.60 16 Total: -1.00 -74.92 364.26 3.34 -71.59 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.02 Total: 27.23 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 5.47 Total: 4.29 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -3.78 Total: -104.30 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -0.11 Total: -45.03 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.75 Total: 46.22 kcal Total: -74.92 3.34 -71.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348752604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.087 kcal (2) G-P(sol) polarization free energy of solvation -74.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds