Wall clock time and date at job start Tue Mar 31 2020 14:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38252 * 120.00254 * 2 1 4 4 C 1.38207 * 120.00174 * 179.72331 * 3 2 1 5 5 C 1.38260 * 119.99981 * 0.55025 * 4 3 2 6 6 C 1.50705 * 119.99947 * 179.74691 * 5 4 3 7 7 H 1.08995 * 110.53594 * 161.84097 * 6 5 4 8 8 N 1.47310 * 110.73308 * 38.91640 * 6 5 4 9 9 C 1.34524 * 106.62008 * 241.18984 * 8 6 5 10 10 O 1.21537 * 123.77420 * 180.21022 * 9 8 6 11 11 N 1.33793 * 112.45677 * 0.38256 * 9 8 6 12 12 C 1.46507 * 124.17615 * 179.86514 * 11 9 8 13 13 C 1.53007 * 109.46915 * 268.28064 * 12 11 9 14 14 C 1.50700 * 115.54634 * 174.49142 * 13 12 11 15 15 H 1.07998 * 119.99774 * 219.88205 * 14 13 12 16 16 C 1.37875 * 119.99887 * 39.88523 * 14 13 12 17 17 N 1.31515 * 120.00473 * 11.42765 * 16 14 13 18 18 Si 1.86803 * 119.99741 * 191.42152 * 16 14 13 19 19 H 1.48497 * 109.47149 * 184.99814 * 18 16 14 20 20 H 1.48498 * 109.47406 * 305.00362 * 18 16 14 21 21 H 1.48502 * 109.46740 * 65.00193 * 18 16 14 22 22 C 1.52999 * 117.51805 * 320.19560 * 13 12 11 23 23 C 1.52995 * 117.49777 * 28.82430 * 13 12 11 24 24 C 1.34769 * 111.64483 * 359.59942 * 11 9 8 25 25 O 1.21229 * 127.15285 * 180.26825 * 24 11 9 26 26 C 1.38210 * 120.00095 * 359.47030 * 5 4 3 27 27 C 1.38218 * 119.99968 * 180.02562 * 2 1 3 28 28 C 1.50697 * 119.99989 * 359.97438 * 27 2 1 29 29 H 1.08993 * 109.46991 * 269.98010 * 1 2 3 30 30 H 1.08998 * 109.46852 * 29.97915 * 1 2 3 31 31 H 1.09005 * 109.46530 * 149.97986 * 1 2 3 32 32 H 1.08004 * 120.00066 * 359.97438 * 3 2 1 33 33 H 1.08003 * 120.00093 * 180.29808 * 4 3 2 34 34 H 0.97005 * 126.68641 * 61.44741 * 8 6 5 35 35 H 1.08994 * 109.46828 * 148.28206 * 12 11 9 36 36 H 1.09000 * 109.46934 * 28.27735 * 12 11 9 37 37 H 0.96998 * 120.00196 * 174.99332 * 17 16 14 38 38 H 1.08997 * 117.49763 * 214.97458 * 22 13 12 39 39 H 1.08998 * 117.49681 * 359.97438 * 22 13 12 40 40 H 1.09004 * 117.50280 * 359.97399 * 23 13 12 41 41 H 1.09000 * 117.49806 * 145.00065 * 23 13 12 42 42 H 1.07994 * 120.00068 * 180.27466 * 26 5 4 43 43 H 1.08995 * 109.47786 * 270.02480 * 28 27 2 44 44 H 1.09008 * 109.46946 * 30.02839 * 28 27 2 45 45 H 1.09007 * 109.46775 * 150.02118 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 -0.0001 0.0001 6 6 5.7788 -0.0001 0.0006 7 1 6.1610 -0.9715 0.3140 8 7 6.2999 1.0676 0.8716 9 6 7.0174 1.8899 0.0850 10 8 7.5929 2.8807 0.4903 11 7 7.0235 1.4973 -1.1940 12 6 7.7221 2.2061 -2.2692 13 6 6.7701 3.2119 -2.9196 14 6 7.3862 4.1103 -3.9609 15 1 7.1052 5.1519 -4.0099 16 6 8.3086 3.6025 -4.8509 17 7 8.4862 2.3027 -4.9441 18 14 9.3061 4.7607 -5.9248 19 1 10.1317 3.9697 -6.8722 20 1 8.3872 5.6439 -6.6869 21 1 10.1924 5.5894 -5.0686 22 6 5.3188 2.7764 -3.1315 23 6 5.6597 3.8000 -2.0467 24 6 6.3125 0.3661 -1.3701 25 8 6.1369 -0.2342 -2.4087 26 6 3.5807 -1.1971 -0.0004 27 6 2.1981 -1.1970 -0.0005 28 6 1.4446 -2.5021 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3632 -0.8899 -0.5142 32 1 1.6584 2.1326 -0.0004 33 1 4.1204 2.1326 0.0106 34 1 6.1570 1.1577 1.8268 35 1 8.0598 1.4891 -3.0174 36 1 8.5823 2.7339 -1.8573 37 1 9.0811 1.9417 -5.6198 38 1 4.8096 3.1397 -4.0242 39 1 5.0420 1.7730 -2.8080 40 1 5.6071 3.4701 -1.0091 41 1 5.3747 4.8367 -2.2256 42 1 4.1207 -2.1323 -0.0003 43 1 1.2629 -2.8168 1.0270 44 1 0.4922 -2.3717 -0.5145 45 1 2.0338 -3.2617 -0.5145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348760205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:38 Heat of formation + Delta-G solvation = 10.876828 kcal Electronic energy + Delta-G solvation = -28906.048267 eV Core-core repulsion = 25083.259628 eV Total energy + Delta-G solvation = -3822.788638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.17813 -39.61550 -38.05829 -36.81279 -35.82037 -34.11606 -32.77432 -32.27667 -32.13739 -28.72328 -27.32856 -26.90564 -25.60183 -24.98211 -22.51773 -22.25292 -21.04938 -20.83717 -20.04838 -18.83601 -17.50077 -17.24785 -16.45800 -16.21571 -15.56604 -15.44835 -15.03565 -14.94586 -14.80444 -14.41472 -14.34632 -13.79902 -13.70491 -13.49487 -13.14421 -13.02656 -12.96118 -12.62158 -12.33765 -12.08878 -11.96786 -11.93033 -11.54615 -11.22096 -11.02452 -10.96750 -10.82125 -10.56222 -10.40061 -10.19094 -10.03901 -9.78086 -9.39532 -9.11178 -8.90126 -8.81746 -8.58123 -8.50816 -8.03631 -6.10858 -4.13039 1.11694 1.32902 2.07031 2.77400 3.29104 3.34604 3.37693 3.40409 3.53428 3.62824 4.34091 4.35911 4.55792 4.62709 4.72436 4.89869 4.92884 4.98328 5.07459 5.27118 5.32205 5.45045 5.48474 5.50902 5.62975 5.65376 5.67970 5.71517 5.99211 6.06012 6.08102 6.23292 6.33507 6.40372 6.44024 6.47198 6.54079 6.70467 6.79011 6.91378 6.98999 7.02029 7.12426 7.35650 7.47751 7.69425 7.87854 7.91499 8.33121 8.58264 8.83224 9.46467 10.93833 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.003717 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.930349 B = 7531.636376 C = 7897.621795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.080 4.080 3 C -0.114 4.114 4 C -0.091 4.091 5 C -0.096 4.096 6 C 0.133 3.867 7 H 0.126 0.874 8 N -0.731 5.731 9 C 0.698 3.302 10 O -0.540 6.540 11 N -0.565 5.565 12 C 0.150 3.850 13 C 0.046 3.954 14 C -0.489 4.489 15 H 0.065 0.935 16 C 0.069 3.931 17 N -0.881 5.881 18 Si 0.900 3.100 19 H -0.286 1.286 20 H -0.276 1.276 21 H -0.274 1.274 22 C -0.196 4.196 23 C -0.206 4.206 24 C 0.526 3.474 25 O -0.451 6.451 26 C -0.091 4.091 27 C -0.091 4.091 28 C -0.115 4.115 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.434 0.566 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.266 0.734 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.126 0.874 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.302 -9.902 12.942 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.080 4.080 3 C -0.132 4.132 4 C -0.109 4.109 5 C -0.098 4.098 6 C 0.024 3.976 7 H 0.144 0.856 8 N -0.396 5.396 9 C 0.400 3.600 10 O -0.413 6.413 11 N -0.310 5.310 12 C 0.032 3.968 13 C 0.045 3.955 14 C -0.527 4.527 15 H 0.083 0.917 16 C -0.134 4.134 17 N -0.518 5.518 18 Si 0.727 3.273 19 H -0.211 1.211 20 H -0.201 1.201 21 H -0.200 1.200 22 C -0.234 4.234 23 C -0.243 4.243 24 C 0.311 3.689 25 O -0.319 6.319 26 C -0.109 4.109 27 C -0.091 4.091 28 C -0.172 4.172 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.278 0.722 35 H 0.152 0.848 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.144 0.856 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.821 -9.779 12.378 19.713 hybrid contribution 0.377 0.696 -0.171 0.809 sum -11.445 -9.084 12.207 19.040 Atomic orbital electron populations 1.20869 0.91293 1.03003 1.02226 1.19810 0.96007 0.92657 0.99526 1.20981 0.93848 0.97616 1.00713 1.21001 0.94346 0.97629 0.97909 1.19406 0.92324 0.94205 1.03849 1.20865 0.92400 0.94250 0.90108 0.85617 1.45576 1.55249 1.27844 1.10913 1.16026 0.79750 0.82803 0.81463 1.90990 1.48184 1.25823 1.76323 1.46840 1.48527 1.25696 1.09950 1.21857 0.93582 0.96355 0.85011 1.19214 0.85971 0.95118 0.95222 1.20431 1.22896 0.95179 1.14153 0.91669 1.25029 0.96326 0.95207 0.96870 1.69774 1.37286 1.10780 1.33914 0.86524 0.80237 0.80716 0.79836 1.21138 1.20125 1.19991 1.22982 1.04915 0.96540 0.98997 1.22867 1.09669 0.97660 0.94092 1.20468 0.78020 0.80697 0.89756 1.90816 1.55994 1.54787 1.30332 1.20793 0.93540 0.97096 0.99520 1.19667 0.93355 0.94976 1.01103 1.20839 1.00159 0.93995 1.02174 0.91187 0.91498 0.91107 0.85800 0.85901 0.72226 0.84843 0.90141 0.92351 0.90517 0.91651 0.92006 0.90639 0.85594 0.91273 0.91161 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.61 36.01 0.35 -0.59 16 2 C -0.08 -0.87 5.88 -104.62 -0.62 -1.48 16 3 C -0.11 -1.39 9.70 -39.59 -0.38 -1.77 16 4 C -0.09 -1.25 9.32 -39.58 -0.37 -1.62 16 5 C -0.10 -1.26 5.07 -104.62 -0.53 -1.79 16 6 C 0.13 1.79 3.89 -69.35 -0.27 1.52 16 7 H 0.13 1.29 8.04 -51.93 -0.42 0.87 16 8 N -0.73 -9.81 5.53 -60.33 -0.33 -10.14 16 9 C 0.70 12.96 6.82 -88.02 -0.60 12.36 16 10 O -0.54 -11.74 17.30 5.33 0.09 -11.65 16 11 N -0.57 -11.47 1.83 -120.72 -0.22 -11.69 16 12 C 0.15 3.64 5.19 -4.03 -0.02 3.62 16 13 C 0.05 1.17 2.29 -155.66 -0.36 0.82 16 14 C -0.49 -13.46 9.01 -34.44 -0.31 -13.77 16 15 H 0.07 1.79 7.84 -52.49 -0.41 1.37 16 16 C 0.07 1.87 5.24 -17.82 -0.09 1.77 16 17 N -0.88 -24.40 11.03 55.43 0.61 -23.79 16 18 Si 0.90 20.93 29.56 -169.99 -5.02 15.91 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.20 -4.74 9.62 -26.73 -0.26 -5.00 16 23 C -0.21 -4.74 9.57 -26.73 -0.26 -4.99 16 24 C 0.53 9.84 5.99 -10.55 -0.06 9.77 16 25 O -0.45 -9.83 16.87 5.60 0.09 -9.74 16 26 C -0.09 -1.04 9.34 -39.58 -0.37 -1.41 16 27 C -0.09 -0.97 5.88 -104.62 -0.62 -1.58 16 28 C -0.12 -0.89 9.60 36.00 0.35 -0.54 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.07 0.49 5.95 -51.93 -0.31 0.19 16 32 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.12 1.87 7.15 -52.48 -0.38 1.50 16 34 H 0.43 4.48 8.96 -40.82 -0.37 4.12 16 35 H 0.13 3.53 6.01 -51.93 -0.31 3.21 16 36 H 0.08 2.01 7.82 -51.93 -0.41 1.60 16 37 H 0.27 7.05 8.32 -40.82 -0.34 6.71 16 38 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 39 H 0.07 1.56 5.38 -51.93 -0.28 1.28 16 40 H 0.06 1.36 5.23 -51.93 -0.27 1.08 16 41 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 42 H 0.13 1.17 8.04 -52.49 -0.42 0.75 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.48 5.95 -51.92 -0.31 0.17 16 45 H 0.07 0.49 8.09 -51.92 -0.42 0.07 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -31.95 366.93 -9.64 -41.59 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.97 Total: 8.67 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -4.42 Total: -4.68 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.06 Total: -45.62 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: 0.19 Total: -21.38 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.95 -9.64 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348760205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.462 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds