Wall clock time and date at job start Tue Mar 31 2020 14:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 120.00289 * 2 1 4 4 C 1.38230 * 120.00181 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.00112 * 179.97438 * 4 3 2 6 6 C 1.38241 * 120.00040 * 0.02562 * 4 3 2 7 7 C 1.38228 * 119.99528 * 359.97438 * 6 4 3 8 8 C 1.50703 * 119.99549 * 179.97438 * 7 6 4 9 9 H 1.08994 * 110.53506 * 341.38336 * 8 7 6 10 10 N 1.47317 * 110.60091 * 218.54520 * 8 7 6 11 11 C 1.34524 * 106.61982 * 241.47786 * 10 8 7 12 12 O 1.21544 * 123.76584 * 180.02562 * 11 10 8 13 13 N 1.33792 * 112.46170 * 0.02562 * 11 10 8 14 14 C 1.46495 * 124.17527 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47421 * 84.56970 * 14 13 11 16 16 C 1.50701 * 115.54680 * 269.47612 * 15 14 13 17 17 H 1.07998 * 119.99386 * 114.39799 * 16 15 14 18 18 C 1.37870 * 120.00260 * 294.39281 * 16 15 14 19 19 N 1.31513 * 120.00013 * 349.80616 * 18 16 15 20 20 Si 1.86797 * 120.00045 * 169.79835 * 18 16 15 21 21 H 1.48501 * 109.47286 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47202 * 120.00349 * 20 18 16 23 23 H 1.48502 * 109.47640 * 240.00442 * 20 18 16 24 24 C 1.52998 * 117.49653 * 123.76951 * 15 14 13 25 25 C 1.52998 * 117.49701 * 55.14588 * 15 14 13 26 26 C 1.34768 * 111.64091 * 0.23114 * 13 11 10 27 27 O 1.21235 * 127.15577 * 179.73601 * 26 13 11 28 28 C 1.38234 * 119.99712 * 180.26649 * 2 1 3 29 29 H 1.09001 * 109.46750 * 90.00181 * 1 2 3 30 30 H 1.08995 * 109.47771 * 210.00502 * 1 2 3 31 31 H 1.09007 * 109.47098 * 330.00812 * 1 2 3 32 32 H 1.08002 * 120.00060 * 359.97438 * 3 2 1 33 33 H 1.09006 * 109.46763 * 270.02322 * 5 4 3 34 34 H 1.08994 * 109.46965 * 30.01652 * 5 4 3 35 35 H 1.08999 * 109.47204 * 150.02338 * 5 4 3 36 36 H 1.07994 * 119.99881 * 179.97438 * 6 4 3 37 37 H 0.97001 * 126.68088 * 61.51330 * 10 8 7 38 38 H 1.09004 * 109.46425 * 204.56893 * 14 13 11 39 39 H 1.08999 * 109.47471 * 324.56486 * 14 13 11 40 40 H 0.97003 * 120.00429 * 185.01970 * 19 18 16 41 41 H 1.08990 * 117.50446 * 0.02562 * 24 15 14 42 42 H 1.09004 * 117.49564 * 145.02465 * 24 15 14 43 43 H 1.09000 * 117.49476 * 214.97399 * 25 15 14 44 44 H 1.08999 * 117.50028 * 359.97438 * 25 15 14 45 45 H 1.08003 * 120.00363 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2717 -0.0001 -0.0016 7 6 3.5805 -1.1971 -0.0016 8 6 4.3340 -2.5023 -0.0034 9 1 5.3624 -2.3496 -0.3303 10 7 3.6581 -3.4899 -0.8625 11 6 3.3063 -4.5156 -0.0664 12 8 2.7252 -5.5078 -0.4602 13 7 3.6676 -4.3216 1.2071 14 6 3.4111 -5.2747 2.2896 15 6 4.5220 -6.3264 2.3171 16 6 4.2726 -7.5570 1.4836 17 1 4.8975 -7.7651 0.6277 18 6 3.2468 -8.4170 1.8137 19 7 2.6161 -8.2790 2.9595 20 14 2.7529 -9.7782 0.6336 21 1 3.6114 -9.7198 -0.5766 22 1 2.9234 -11.0954 1.2979 23 1 1.3314 -9.6019 0.2416 24 6 5.2949 -6.5035 3.6255 25 6 5.9642 -5.8279 2.4269 26 6 4.2917 -3.1385 1.3719 27 8 4.7301 -2.6796 2.4048 28 6 2.1981 -1.1972 -0.0056 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8901 0.5137 32 1 1.6583 2.1325 -0.0004 33 1 4.5150 2.8168 -1.0290 34 1 3.7454 3.2618 0.5130 35 1 5.2869 2.3719 0.5120 36 1 5.3517 -0.0001 -0.0024 37 1 3.4985 -3.4151 -1.8164 38 1 3.3885 -4.7451 3.2421 39 1 2.4515 -5.7640 2.1231 40 1 1.9445 -8.9269 3.2246 41 1 5.0119 -5.8711 4.4668 42 1 5.6233 -7.5103 3.8838 43 1 6.7329 -6.3903 1.8968 44 1 6.1218 -4.7506 2.4792 45 1 1.6581 -2.1325 -0.0103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348764388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:26 Heat of formation + Delta-G solvation = 3.791486 kcal Electronic energy + Delta-G solvation = -28491.041061 eV Core-core repulsion = 24667.945179 eV Total energy + Delta-G solvation = -3823.095882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.05247 -39.60498 -38.03732 -36.75986 -35.69149 -33.93658 -33.71756 -32.00020 -31.91603 -27.90605 -27.33896 -26.89654 -26.39527 -25.26063 -22.66991 -21.37469 -21.11189 -20.89256 -20.25591 -18.92932 -17.58267 -16.93511 -16.56366 -16.15250 -15.74770 -15.55471 -15.01340 -14.73918 -14.48167 -14.41855 -14.19108 -13.78054 -13.60170 -13.45350 -13.42245 -13.29007 -13.09360 -12.74698 -12.73960 -12.11540 -11.84661 -11.74785 -11.41365 -11.36196 -11.21020 -10.93200 -10.83323 -10.56371 -10.40332 -10.14282 -9.92393 -9.73347 -9.29238 -8.93282 -8.78516 -8.77625 -8.71433 -8.46857 -8.13139 -5.98575 -3.99913 1.05654 1.19448 2.04485 2.77955 3.37157 3.40184 3.46052 3.51203 3.51960 3.67878 4.29494 4.49998 4.50226 4.56680 4.58744 4.95765 5.00635 5.09921 5.15999 5.20837 5.31774 5.33810 5.39156 5.43465 5.43788 5.62120 5.63028 5.68073 5.91548 5.99363 6.07769 6.19810 6.28144 6.33309 6.34366 6.37193 6.43275 6.64223 6.70409 6.81181 6.95451 7.06575 7.12030 7.34512 7.45715 7.71201 7.85102 7.95484 8.44099 8.71286 8.96215 9.63889 11.10048 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.003633 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.040080 B = 7704.479130 C = 8388.574541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.081 4.081 3 C -0.114 4.114 4 C -0.084 4.084 5 C -0.113 4.113 6 C -0.101 4.101 7 C -0.084 4.084 8 C 0.135 3.865 9 H 0.127 0.873 10 N -0.733 5.733 11 C 0.698 3.302 12 O -0.510 6.510 13 N -0.555 5.555 14 C 0.160 3.840 15 C 0.032 3.968 16 C -0.479 4.479 17 H 0.057 0.943 18 C 0.076 3.924 19 N -0.883 5.883 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.288 1.288 23 H -0.283 1.283 24 C -0.160 4.160 25 C -0.208 4.208 26 C 0.527 3.473 27 O -0.474 6.474 28 C -0.102 4.102 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.127 0.873 37 H 0.434 0.566 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.260 0.740 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 20.708 -7.221 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.081 4.081 3 C -0.133 4.133 4 C -0.085 4.085 5 C -0.170 4.170 6 C -0.120 4.120 7 C -0.086 4.086 8 C 0.025 3.975 9 H 0.145 0.855 10 N -0.399 5.399 11 C 0.398 3.602 12 O -0.380 6.380 13 N -0.299 5.299 14 C 0.041 3.959 15 C 0.031 3.969 16 C -0.517 4.517 17 H 0.075 0.925 18 C -0.127 4.127 19 N -0.520 5.520 20 Si 0.722 3.278 21 H -0.198 1.198 22 H -0.215 1.215 23 H -0.209 1.209 24 C -0.198 4.198 25 C -0.245 4.245 26 C 0.313 3.687 27 O -0.345 6.345 28 C -0.120 4.120 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.278 0.722 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.330 20.231 -6.673 21.306 hybrid contribution -0.255 -0.784 -0.952 1.259 sum -0.585 19.447 -7.625 20.897 Atomic orbital electron populations 1.20803 0.90956 1.03008 1.02414 1.19869 0.96207 0.92773 0.99296 1.20944 0.93528 0.97503 1.01281 1.19843 0.93769 0.95171 0.99672 1.20782 1.00034 0.93868 1.02284 1.20828 0.99884 0.90941 1.00304 1.19486 0.93789 0.92885 1.02415 1.20805 0.98574 0.87858 0.90217 0.85542 1.45574 1.63985 1.19341 1.11023 1.15917 0.79783 0.83303 0.81156 1.91064 1.42936 1.28114 1.75862 1.46550 1.52986 1.19611 1.10737 1.21565 1.02285 0.87381 0.84660 1.19161 0.86299 0.94600 0.96841 1.20326 1.14458 1.05480 1.11387 0.92464 1.24875 0.95489 0.97489 0.94847 1.69974 1.26085 1.35865 1.20103 0.86513 0.78819 0.80972 0.81526 1.19811 1.21487 1.20852 1.22723 1.05895 0.99774 0.91419 1.22888 0.98596 0.97871 1.05156 1.20526 0.76970 0.81374 0.89855 1.90751 1.45327 1.67123 1.31309 1.20878 0.93285 0.98066 0.99788 0.91065 0.91289 0.91488 0.86040 0.91174 0.91553 0.91317 0.85533 0.72193 0.91294 0.87840 0.93042 0.91639 0.89885 0.90580 0.91428 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.01 36.01 0.36 -0.64 16 2 C -0.08 -0.88 5.88 -104.62 -0.62 -1.49 16 3 C -0.11 -1.11 9.36 -39.59 -0.37 -1.48 16 4 C -0.08 -0.81 5.88 -104.62 -0.62 -1.43 16 5 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 6 C -0.10 -1.07 9.34 -39.58 -0.37 -1.44 16 7 C -0.08 -1.02 5.06 -104.62 -0.53 -1.55 16 8 C 0.14 1.78 3.91 -69.35 -0.27 1.51 16 9 H 0.13 1.34 8.04 -51.93 -0.42 0.93 16 10 N -0.73 -10.19 5.49 -60.32 -0.33 -10.53 16 11 C 0.70 13.55 8.61 -88.02 -0.76 12.79 16 12 O -0.51 -12.07 17.56 5.33 0.09 -11.97 16 13 N -0.55 -11.09 2.42 -120.73 -0.29 -11.38 16 14 C 0.16 3.72 5.58 -4.04 -0.02 3.70 16 15 C 0.03 0.80 1.54 -155.66 -0.24 0.56 16 16 C -0.48 -13.30 8.79 -34.44 -0.30 -13.61 16 17 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 18 C 0.08 2.12 5.16 -17.82 -0.09 2.03 16 19 N -0.88 -25.06 12.88 55.43 0.71 -24.35 16 20 Si 0.89 22.34 29.55 -169.99 -5.02 17.31 16 21 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 24 C -0.16 -3.77 9.88 -26.73 -0.26 -4.04 16 25 C -0.21 -4.67 9.66 -26.73 -0.26 -4.93 16 26 C 0.53 9.31 6.77 -10.55 -0.07 9.23 16 27 O -0.47 -9.32 16.96 5.60 0.09 -9.23 16 28 C -0.10 -1.26 8.97 -39.58 -0.36 -1.62 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 36 H 0.13 1.11 8.05 -52.49 -0.42 0.68 16 37 H 0.43 4.79 8.96 -40.82 -0.37 4.42 16 38 H 0.07 1.55 7.62 -51.93 -0.40 1.15 16 39 H 0.10 2.67 7.31 -51.93 -0.38 2.29 16 40 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 41 H 0.07 1.47 8.03 -51.93 -0.42 1.05 16 42 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 43 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 44 H 0.07 1.45 6.63 -51.93 -0.34 1.11 16 45 H 0.12 1.63 7.70 -52.48 -0.40 1.23 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -32.56 382.06 -9.89 -42.45 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.49 Total: 4.74 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -4.41 Total: -2.80 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.09 Total: -46.25 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.19 Total: -21.20 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.56 -9.89 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348764388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.239 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds