Wall clock time and date at job start Tue Mar 31 2020 14:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 120.00289 * 2 1 4 4 C 1.38230 * 120.00181 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.00112 * 179.97438 * 4 3 2 6 6 C 1.38241 * 120.00040 * 0.02562 * 4 3 2 7 7 C 1.38228 * 119.99528 * 359.97438 * 6 4 3 8 8 C 1.50703 * 119.99549 * 179.97438 * 7 6 4 9 9 H 1.08994 * 110.53506 * 341.38336 * 8 7 6 10 10 N 1.47317 * 110.60091 * 218.54520 * 8 7 6 11 11 C 1.34524 * 106.61982 * 241.47786 * 10 8 7 12 12 O 1.21544 * 123.76584 * 180.02562 * 11 10 8 13 13 N 1.33792 * 112.46170 * 0.02562 * 11 10 8 14 14 C 1.46495 * 124.17527 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47421 * 84.56970 * 14 13 11 16 16 C 1.50701 * 115.54680 * 269.47612 * 15 14 13 17 17 H 1.07998 * 119.99386 * 114.39799 * 16 15 14 18 18 C 1.37870 * 120.00260 * 294.39281 * 16 15 14 19 19 N 1.31513 * 120.00013 * 349.80616 * 18 16 15 20 20 Si 1.86797 * 120.00045 * 169.79835 * 18 16 15 21 21 H 1.48501 * 109.47286 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47202 * 120.00349 * 20 18 16 23 23 H 1.48502 * 109.47640 * 240.00442 * 20 18 16 24 24 C 1.52998 * 117.49653 * 123.76951 * 15 14 13 25 25 C 1.52998 * 117.49701 * 55.14588 * 15 14 13 26 26 C 1.34768 * 111.64091 * 0.23114 * 13 11 10 27 27 O 1.21235 * 127.15577 * 179.73601 * 26 13 11 28 28 C 1.38234 * 119.99712 * 180.26649 * 2 1 3 29 29 H 1.09001 * 109.46750 * 90.00181 * 1 2 3 30 30 H 1.08995 * 109.47771 * 210.00502 * 1 2 3 31 31 H 1.09007 * 109.47098 * 330.00812 * 1 2 3 32 32 H 1.08002 * 120.00060 * 359.97438 * 3 2 1 33 33 H 1.09006 * 109.46763 * 270.02322 * 5 4 3 34 34 H 1.08994 * 109.46965 * 30.01652 * 5 4 3 35 35 H 1.08999 * 109.47204 * 150.02338 * 5 4 3 36 36 H 1.07994 * 119.99881 * 179.97438 * 6 4 3 37 37 H 0.97001 * 126.68088 * 61.51330 * 10 8 7 38 38 H 1.09004 * 109.46425 * 204.56893 * 14 13 11 39 39 H 1.08999 * 109.47471 * 324.56486 * 14 13 11 40 40 H 0.97003 * 120.00429 * 185.01970 * 19 18 16 41 41 H 1.08990 * 117.50446 * 0.02562 * 24 15 14 42 42 H 1.09004 * 117.49564 * 145.02465 * 24 15 14 43 43 H 1.09000 * 117.49476 * 214.97399 * 25 15 14 44 44 H 1.08999 * 117.50028 * 359.97438 * 25 15 14 45 45 H 1.08003 * 120.00363 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2717 -0.0001 -0.0016 7 6 3.5805 -1.1971 -0.0016 8 6 4.3340 -2.5023 -0.0034 9 1 5.3624 -2.3496 -0.3303 10 7 3.6581 -3.4899 -0.8625 11 6 3.3063 -4.5156 -0.0664 12 8 2.7252 -5.5078 -0.4602 13 7 3.6676 -4.3216 1.2071 14 6 3.4111 -5.2747 2.2896 15 6 4.5220 -6.3264 2.3171 16 6 4.2726 -7.5570 1.4836 17 1 4.8975 -7.7651 0.6277 18 6 3.2468 -8.4170 1.8137 19 7 2.6161 -8.2790 2.9595 20 14 2.7529 -9.7782 0.6336 21 1 3.6114 -9.7198 -0.5766 22 1 2.9234 -11.0954 1.2979 23 1 1.3314 -9.6019 0.2416 24 6 5.2949 -6.5035 3.6255 25 6 5.9642 -5.8279 2.4269 26 6 4.2917 -3.1385 1.3719 27 8 4.7301 -2.6796 2.4048 28 6 2.1981 -1.1972 -0.0056 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8901 0.5137 32 1 1.6583 2.1325 -0.0004 33 1 4.5150 2.8168 -1.0290 34 1 3.7454 3.2618 0.5130 35 1 5.2869 2.3719 0.5120 36 1 5.3517 -0.0001 -0.0024 37 1 3.4985 -3.4151 -1.8164 38 1 3.3885 -4.7451 3.2421 39 1 2.4515 -5.7640 2.1231 40 1 1.9445 -8.9269 3.2246 41 1 5.0119 -5.8711 4.4668 42 1 5.6233 -7.5103 3.8838 43 1 6.7329 -6.3903 1.8968 44 1 6.1218 -4.7506 2.4792 45 1 1.6581 -2.1325 -0.0103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348764388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:25 Heat of formation + Delta-G solvation = -14.682245 kcal Electronic energy + Delta-G solvation = -28491.842142 eV Core-core repulsion = 24667.945179 eV Total energy + Delta-G solvation = -3823.896963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.46813 -40.48103 -39.55990 -38.56460 -37.18368 -35.39786 -34.42436 -34.04918 -32.99510 -29.12804 -28.50400 -27.74827 -27.56357 -27.24130 -24.04623 -23.09092 -22.54156 -21.72642 -21.49053 -20.79067 -19.02609 -18.38155 -17.85341 -17.64629 -16.98029 -16.70418 -16.55803 -16.34849 -16.24943 -15.72139 -15.39607 -15.18534 -14.89544 -14.77249 -14.55750 -14.11657 -13.98790 -13.86654 -13.72423 -13.33467 -13.29898 -13.02027 -12.82656 -12.75617 -12.65643 -12.44915 -12.22099 -12.15313 -11.96672 -11.91617 -11.75506 -11.24604 -10.93023 -10.70232 -10.54279 -10.37974 -10.13357 -9.64044 -9.49759 -8.12729 -6.17781 0.18690 0.39808 0.63540 1.34095 1.36785 1.41482 1.50022 2.11147 2.18702 2.42421 2.63856 3.13940 3.17665 3.38669 3.47039 3.73988 3.90301 3.99346 4.11063 4.21462 4.26853 4.41939 4.46765 4.47915 4.47994 4.55242 4.63010 4.68989 4.76357 4.77820 4.85304 4.91742 4.94195 5.05124 5.08058 5.16952 5.20874 5.35557 5.45393 5.47855 5.54976 5.58671 5.65722 5.77838 5.89199 6.04607 6.20344 6.37177 6.41407 6.79925 7.24313 7.47236 8.95710 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.003633 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.040080 B = 7704.479130 C = 8388.574541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.115 4.115 4 C -0.085 4.085 5 C -0.112 4.112 6 C -0.104 4.104 7 C -0.097 4.097 8 C 0.150 3.850 9 H 0.166 0.834 10 N -0.705 5.705 11 C 0.696 3.304 12 O -0.563 6.563 13 N -0.564 5.564 14 C 0.175 3.825 15 C 0.009 3.991 16 C -0.489 4.489 17 H 0.040 0.960 18 C 0.036 3.964 19 N -0.904 5.904 20 Si 0.942 3.058 21 H -0.276 1.276 22 H -0.276 1.276 23 H -0.287 1.287 24 C -0.160 4.160 25 C -0.183 4.183 26 C 0.523 3.477 27 O -0.494 6.494 28 C -0.124 4.124 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.148 0.852 37 H 0.450 0.550 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.261 0.739 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.017 23.574 -8.259 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.132 4.132 4 C -0.086 4.086 5 C -0.168 4.168 6 C -0.123 4.123 7 C -0.098 4.098 8 C 0.042 3.958 9 H 0.183 0.817 10 N -0.372 5.372 11 C 0.396 3.604 12 O -0.436 6.436 13 N -0.308 5.308 14 C 0.054 3.946 15 C 0.008 3.992 16 C -0.526 4.526 17 H 0.058 0.942 18 C -0.164 4.164 19 N -0.542 5.542 20 Si 0.769 3.231 21 H -0.201 1.201 22 H -0.202 1.202 23 H -0.213 1.213 24 C -0.198 4.198 25 C -0.220 4.220 26 C 0.311 3.689 27 O -0.366 6.366 28 C -0.142 4.142 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.164 0.836 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.165 0.835 37 H 0.297 0.703 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.723 23.151 -7.743 24.422 hybrid contribution -0.581 -1.535 -0.620 1.755 sum 0.142 21.616 -8.363 23.178 Atomic orbital electron populations 1.20835 0.89900 1.03218 1.03173 1.20117 0.97210 0.92705 0.99053 1.21282 0.93945 0.97941 1.00070 1.20234 0.93994 0.96121 0.98206 1.20843 1.00060 0.92477 1.03440 1.21099 1.01032 0.90499 0.99623 1.19383 0.93532 0.92654 1.04222 1.20918 1.00643 0.87468 0.86768 0.81691 1.45383 1.62522 1.17834 1.11426 1.16055 0.79366 0.83634 0.81316 1.91022 1.45415 1.30564 1.76646 1.46500 1.53776 1.20111 1.10451 1.21045 1.00107 0.87631 0.85825 1.19180 0.88041 0.94555 0.97452 1.20448 1.14367 1.06689 1.11139 0.94157 1.25430 0.95621 0.99420 0.95964 1.70035 1.26498 1.36595 1.21049 0.85761 0.77964 0.79498 0.79907 1.20097 1.20153 1.21277 1.22668 1.05885 0.99552 0.91720 1.22828 0.97062 0.98468 1.03640 1.21222 0.75752 0.80460 0.91472 1.90732 1.46009 1.67280 1.32615 1.20867 0.93728 0.98047 1.01570 0.90009 0.92535 0.89813 0.83636 0.89748 0.90514 0.90725 0.83455 0.70301 0.91084 0.91264 0.92966 0.90568 0.91130 0.90273 0.90098 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 10.01 71.24 0.71 -1.14 16 2 C -0.09 -1.82 5.88 -19.87 -0.12 -1.93 16 3 C -0.11 -1.88 9.36 22.27 0.21 -1.67 16 4 C -0.09 -1.35 5.88 -19.86 -0.12 -1.47 16 5 C -0.11 -1.08 10.01 71.24 0.71 -0.36 16 6 C -0.10 -1.87 9.34 22.27 0.21 -1.66 16 7 C -0.10 -2.15 5.06 -19.87 -0.10 -2.25 16 8 C 0.15 3.67 3.91 43.63 0.17 3.84 16 9 H 0.17 2.87 8.04 -2.39 -0.02 2.85 16 10 N -0.71 -18.97 5.49 -463.18 -2.54 -21.52 16 11 C 0.70 27.44 8.61 179.44 1.55 28.98 16 12 O -0.56 -27.62 17.56 -3.86 -0.07 -27.69 16 13 N -0.56 -22.86 2.42 -773.12 -1.87 -24.73 16 14 C 0.17 8.37 5.58 86.38 0.48 8.86 16 15 C 0.01 0.45 1.54 -52.93 -0.08 0.37 16 16 C -0.49 -27.80 8.79 25.60 0.23 -27.57 16 17 H 0.04 2.37 7.83 -2.91 -0.02 2.35 16 18 C 0.04 2.07 5.16 84.65 0.44 2.51 16 19 N -0.90 -52.53 12.88 21.44 0.28 -52.25 16 20 Si 0.94 46.75 29.55 68.60 2.03 48.77 16 21 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 24 C -0.16 -7.58 9.88 30.60 0.30 -7.28 16 25 C -0.18 -8.11 9.66 30.60 0.30 -7.81 16 26 C 0.52 18.01 6.77 87.94 0.60 18.61 16 27 O -0.49 -18.89 16.96 -2.89 -0.05 -18.94 16 28 C -0.12 -2.98 8.97 22.27 0.20 -2.78 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.04 8.09 -2.39 -0.02 1.02 16 31 H 0.08 1.05 8.09 -2.38 -0.02 1.03 16 32 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 33 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 35 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 36 H 0.15 1.97 8.05 -2.91 -0.02 1.94 16 37 H 0.45 9.34 8.96 -92.71 -0.83 8.51 16 38 H 0.07 3.28 7.62 -2.39 -0.02 3.26 16 39 H 0.07 3.76 7.31 -2.39 -0.02 3.75 16 40 H 0.26 14.51 8.32 -92.71 -0.77 13.74 16 41 H 0.08 3.41 8.03 -2.39 -0.02 3.39 16 42 H 0.07 3.49 8.14 -2.38 -0.02 3.47 16 43 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 44 H 0.08 3.36 6.63 -2.39 -0.02 3.35 16 45 H 0.10 2.80 7.70 -2.91 -0.02 2.78 16 Total: -1.00 -72.28 382.06 3.63 -68.65 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.18 Total: 20.48 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 5.68 Total: 7.22 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -4.14 Total: -98.49 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -0.12 Total: -46.63 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -72.28 3.63 -68.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348764388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.965 kcal (2) G-P(sol) polarization free energy of solvation -72.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds