Wall clock time and date at job start Tue Mar 31 2020 14:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00233 * 2 1 4 4 C 1.38231 * 120.00181 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00204 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.00045 * 359.95903 * 4 3 2 7 7 C 1.38237 * 119.99710 * 0.02562 * 6 4 3 8 8 C 1.50700 * 119.99793 * 179.97438 * 7 6 4 9 9 H 1.08996 * 110.53607 * 22.82990 * 8 7 6 10 10 N 1.47315 * 110.73037 * 145.75056 * 8 7 6 11 11 C 1.34529 * 106.61881 * 118.36679 * 10 8 7 12 12 O 1.21542 * 123.76702 * 180.20821 * 11 10 8 13 13 N 1.33789 * 112.45713 * 0.38460 * 11 10 8 14 14 C 1.46498 * 124.17495 * 179.86563 * 13 11 10 15 15 C 1.53000 * 109.46907 * 272.02878 * 14 13 11 16 16 C 1.50700 * 115.55018 * 303.23662 * 15 14 13 17 17 H 1.07999 * 119.99420 * 95.20025 * 16 15 14 18 18 C 1.37875 * 120.00163 * 275.47451 * 16 15 14 19 19 N 1.31516 * 119.99915 * 188.83614 * 18 16 15 20 20 Si 1.86801 * 120.00057 * 8.82846 * 18 16 15 21 21 H 1.48495 * 109.46701 * 93.69576 * 20 18 16 22 22 H 1.48497 * 109.46837 * 213.69143 * 20 18 16 23 23 H 1.48498 * 109.47218 * 333.69168 * 20 18 16 24 24 C 1.52997 * 117.50009 * 88.91250 * 15 14 13 25 25 C 1.53003 * 117.49922 * 157.57111 * 15 14 13 26 26 C 1.34769 * 111.64497 * 359.59296 * 13 11 10 27 27 O 1.21239 * 127.15682 * 180.26564 * 26 13 11 28 28 C 1.38235 * 120.00333 * 0.25255 * 7 6 4 29 29 H 1.09001 * 109.47201 * 89.99646 * 1 2 3 30 30 H 1.08999 * 109.47354 * 210.00076 * 1 2 3 31 31 H 1.08999 * 109.46937 * 329.99665 * 1 2 3 32 32 H 1.08001 * 119.99852 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47020 * 269.97621 * 5 4 3 34 34 H 1.09001 * 109.46865 * 29.98107 * 5 4 3 35 35 H 1.08999 * 109.46932 * 149.98153 * 5 4 3 36 36 H 1.07994 * 120.00232 * 179.97438 * 6 4 3 37 37 H 0.96997 * 126.68439 * 298.55107 * 10 8 7 38 38 H 1.09006 * 109.47064 * 152.03166 * 14 13 11 39 39 H 1.09000 * 109.47621 * 32.03305 * 14 13 11 40 40 H 0.96993 * 120.00376 * 180.02562 * 19 18 16 41 41 H 1.08996 * 117.50153 * 214.99925 * 24 15 14 42 42 H 1.09002 * 117.49698 * 0.02562 * 24 15 14 43 43 H 1.09008 * 117.49832 * 359.97438 * 25 15 14 44 44 H 1.09001 * 117.50422 * 144.96936 * 25 15 14 45 45 H 1.07993 * 120.00153 * 179.72571 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2717 -0.0001 -0.0002 7 6 3.5805 -1.1972 0.0001 8 6 4.3340 -2.5023 -0.0001 9 1 5.3400 -2.3631 0.3955 10 7 3.6087 -3.5233 0.7756 11 6 3.3076 -4.5157 -0.0813 12 8 2.7016 -5.5207 0.2349 13 7 3.7530 -4.2744 -1.3196 14 6 3.5691 -5.1850 -2.4523 15 6 4.7257 -6.1857 -2.4951 16 6 6.1044 -5.5826 -2.5753 17 1 6.6798 -5.4291 -1.6744 18 6 6.6289 -5.2216 -3.7982 19 7 7.8897 -4.8593 -3.8919 20 14 5.5488 -5.2473 -5.3221 21 1 4.9682 -3.8980 -5.5399 22 1 6.3658 -5.6309 -6.5014 23 1 4.4541 -6.2333 -5.1364 24 6 4.5673 -7.4830 -1.6996 25 6 4.4893 -7.5078 -3.2281 26 6 4.3866 -3.0875 -1.3975 27 8 4.8929 -2.5907 -2.3808 28 6 2.1981 -1.1972 -0.0052 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1324 0.0004 33 1 4.5157 2.8163 -1.0289 34 1 3.7450 3.2620 0.5125 35 1 5.2865 2.3719 0.5127 36 1 5.3517 -0.0001 -0.0011 37 1 3.3886 -3.4859 1.7195 38 1 3.5498 -4.6122 -3.3796 39 1 2.6278 -5.7224 -2.3375 40 1 8.2587 -4.6049 -4.7521 41 1 5.4602 -7.9002 -1.2342 42 1 3.6389 -7.6237 -1.1461 43 1 3.5096 -7.6648 -3.6795 44 1 5.3308 -7.9411 -3.7687 45 1 1.6582 -2.1325 -0.0094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348764644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:29 Heat of formation + Delta-G solvation = 8.779989 kcal Electronic energy + Delta-G solvation = -28737.391429 eV Core-core repulsion = 24914.511865 eV Total energy + Delta-G solvation = -3822.879564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.02919 -39.57282 -37.92773 -37.04480 -35.72919 -34.03934 -33.67342 -32.06397 -31.94783 -27.90772 -27.47392 -26.85999 -26.47559 -25.32733 -22.64442 -21.56962 -21.23655 -20.85166 -20.28365 -18.89509 -17.59546 -16.82621 -16.54778 -16.34426 -15.79165 -15.57861 -14.87924 -14.83890 -14.68270 -14.39219 -14.15010 -13.71903 -13.61812 -13.42007 -13.37690 -13.16037 -13.02325 -12.76270 -12.70954 -12.40612 -12.07838 -11.90742 -11.77563 -11.34399 -11.16772 -11.07666 -10.75846 -10.61110 -10.44959 -10.30579 -9.72046 -9.63856 -9.37484 -9.02865 -8.83515 -8.71327 -8.66555 -8.48075 -8.39668 -6.05830 -4.07957 1.11384 1.24739 2.22400 2.72834 3.36413 3.42895 3.45045 3.46766 3.50476 3.66682 4.38121 4.50044 4.55294 4.61309 4.66592 4.99594 5.00960 5.11733 5.15601 5.17638 5.25337 5.38499 5.40979 5.42890 5.47459 5.57793 5.67071 5.70165 5.83410 5.94956 6.02826 6.03515 6.05281 6.15174 6.30530 6.37099 6.39692 6.47297 6.52987 6.60991 6.81012 6.86396 7.03553 7.06895 7.22051 7.60772 7.79708 8.03138 8.51933 8.59076 8.94645 9.59526 11.06211 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.004374 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.210871 B = 6400.450903 C = 7312.002699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.116 4.116 4 C -0.082 4.082 5 C -0.114 4.114 6 C -0.098 4.098 7 C -0.083 4.083 8 C 0.134 3.866 9 H 0.131 0.869 10 N -0.728 5.728 11 C 0.706 3.294 12 O -0.549 6.549 13 N -0.552 5.552 14 C 0.154 3.846 15 C -0.025 4.025 16 C -0.486 4.486 17 H 0.070 0.930 18 C 0.093 3.907 19 N -0.892 5.892 20 Si 0.856 3.144 21 H -0.276 1.276 22 H -0.291 1.291 23 H -0.244 1.244 24 C -0.175 4.175 25 C -0.176 4.176 26 C 0.534 3.466 27 O -0.437 6.437 28 C -0.105 4.105 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.129 0.871 37 H 0.435 0.565 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.263 0.737 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.071 12.370 9.604 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.134 4.134 4 C -0.082 4.082 5 C -0.170 4.170 6 C -0.117 4.117 7 C -0.085 4.085 8 C 0.025 3.975 9 H 0.148 0.852 10 N -0.392 5.392 11 C 0.408 3.592 12 O -0.424 6.424 13 N -0.296 5.296 14 C 0.033 3.967 15 C -0.027 4.027 16 C -0.523 4.523 17 H 0.088 0.912 18 C -0.110 4.110 19 N -0.529 5.529 20 Si 0.683 3.317 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.168 1.168 24 C -0.212 4.212 25 C -0.214 4.214 26 C 0.319 3.681 27 O -0.303 6.303 28 C -0.123 4.123 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.147 0.853 37 H 0.278 0.722 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.955 12.095 8.960 19.222 hybrid contribution -0.313 0.043 -0.493 0.586 sum -12.268 12.138 8.467 19.223 Atomic orbital electron populations 1.20785 0.91062 1.02716 1.02462 1.19841 0.96083 0.92819 0.99645 1.20931 0.93535 0.97468 1.01428 1.19851 0.93739 0.95209 0.99440 1.20790 0.99902 0.93753 1.02590 1.20883 1.00183 0.90904 0.99732 1.19492 0.93739 0.92954 1.02268 1.20871 0.97888 0.87154 0.91608 0.85181 1.45462 1.61807 1.19922 1.11981 1.15852 0.79171 0.83236 0.80973 1.90944 1.44790 1.27696 1.78980 1.46027 1.52301 1.20460 1.10802 1.21456 0.98583 0.91092 0.85545 1.19714 0.95318 0.86008 1.01674 1.20022 0.96110 1.41727 0.94466 0.91210 1.24826 0.94224 0.93401 0.98570 1.69893 1.12657 1.44910 1.25400 0.87202 0.82296 0.79376 0.82809 1.20211 1.21794 1.16767 1.22894 1.01243 1.03822 0.93227 1.22920 1.00575 1.03597 0.94357 1.20257 0.77346 0.80970 0.89555 1.90827 1.39788 1.64193 1.35518 1.20825 0.93219 0.97910 1.00349 0.91105 0.91468 0.91555 0.86079 0.90961 0.91645 0.91308 0.85291 0.72184 0.90135 0.90864 0.92682 0.89927 0.90248 0.91060 0.89420 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.08 -0.91 5.88 -104.62 -0.62 -1.53 16 3 C -0.12 -1.18 9.36 -39.59 -0.37 -1.55 16 4 C -0.08 -0.88 5.88 -104.62 -0.62 -1.49 16 5 C -0.11 -0.92 10.01 36.01 0.36 -0.55 16 6 C -0.10 -1.18 9.35 -39.58 -0.37 -1.55 16 7 C -0.08 -1.09 5.07 -104.62 -0.53 -1.62 16 8 C 0.13 1.96 3.89 -69.35 -0.27 1.69 16 9 H 0.13 1.70 8.07 -51.93 -0.42 1.28 16 10 N -0.73 -10.01 5.37 -60.33 -0.32 -10.33 16 11 C 0.71 12.76 8.62 -88.02 -0.76 12.00 16 12 O -0.55 -11.13 17.36 5.33 0.09 -11.04 16 13 N -0.55 -10.99 2.44 -120.73 -0.29 -11.28 16 14 C 0.15 3.28 5.38 -4.04 -0.02 3.26 16 15 C -0.03 -0.60 1.08 -155.66 -0.17 -0.76 16 16 C -0.49 -13.47 8.62 -34.44 -0.30 -13.76 16 17 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 18 C 0.09 2.68 5.46 -17.82 -0.10 2.58 16 19 N -0.89 -27.32 13.96 55.43 0.77 -26.54 16 20 Si 0.86 21.53 25.48 -169.99 -4.33 17.20 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 23 H -0.24 -5.58 5.21 56.52 0.29 -5.29 16 24 C -0.17 -3.76 9.93 -26.70 -0.27 -4.03 16 25 C -0.18 -3.80 7.09 -26.69 -0.19 -3.98 16 26 C 0.53 10.56 7.07 -10.55 -0.07 10.48 16 27 O -0.44 -10.29 17.73 5.59 0.10 -10.19 16 28 C -0.10 -1.30 9.01 -39.58 -0.36 -1.66 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 35 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 36 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.43 4.59 8.96 -40.82 -0.37 4.23 16 38 H 0.08 1.77 6.21 -51.93 -0.32 1.45 16 39 H 0.07 1.42 7.87 -51.93 -0.41 1.01 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 42 H 0.08 1.64 7.99 -51.93 -0.42 1.22 16 43 H 0.07 1.38 8.12 -51.92 -0.42 0.96 16 44 H 0.09 1.95 7.88 -51.93 -0.41 1.54 16 45 H 0.12 1.52 7.59 -52.49 -0.40 1.13 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -34.01 375.43 -9.23 -43.23 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.62 Total: 6.38 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -4.28 Total: -3.07 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.15 Total: -48.16 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: 0.19 Total: -21.23 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.33 Total: 17.20 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.01 -9.23 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348764644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.011 kcal (2) G-P(sol) polarization free energy of solvation -34.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds