Wall clock time and date at job start Tue Mar 31 2020 14:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00233 * 2 1 4 4 C 1.38231 * 120.00181 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00204 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.00045 * 359.95903 * 4 3 2 7 7 C 1.38237 * 119.99710 * 0.02562 * 6 4 3 8 8 C 1.50700 * 119.99793 * 179.97438 * 7 6 4 9 9 H 1.08996 * 110.53607 * 22.82990 * 8 7 6 10 10 N 1.47315 * 110.73037 * 145.75056 * 8 7 6 11 11 C 1.34529 * 106.61881 * 118.36679 * 10 8 7 12 12 O 1.21542 * 123.76702 * 180.20821 * 11 10 8 13 13 N 1.33789 * 112.45713 * 0.38460 * 11 10 8 14 14 C 1.46498 * 124.17495 * 179.86563 * 13 11 10 15 15 C 1.53000 * 109.46907 * 272.02878 * 14 13 11 16 16 C 1.50700 * 115.55018 * 303.23662 * 15 14 13 17 17 H 1.07999 * 119.99420 * 95.20025 * 16 15 14 18 18 C 1.37875 * 120.00163 * 275.47451 * 16 15 14 19 19 N 1.31516 * 119.99915 * 188.83614 * 18 16 15 20 20 Si 1.86801 * 120.00057 * 8.82846 * 18 16 15 21 21 H 1.48495 * 109.46701 * 93.69576 * 20 18 16 22 22 H 1.48497 * 109.46837 * 213.69143 * 20 18 16 23 23 H 1.48498 * 109.47218 * 333.69168 * 20 18 16 24 24 C 1.52997 * 117.50009 * 88.91250 * 15 14 13 25 25 C 1.53003 * 117.49922 * 157.57111 * 15 14 13 26 26 C 1.34769 * 111.64497 * 359.59296 * 13 11 10 27 27 O 1.21239 * 127.15682 * 180.26564 * 26 13 11 28 28 C 1.38235 * 120.00333 * 0.25255 * 7 6 4 29 29 H 1.09001 * 109.47201 * 89.99646 * 1 2 3 30 30 H 1.08999 * 109.47354 * 210.00076 * 1 2 3 31 31 H 1.08999 * 109.46937 * 329.99665 * 1 2 3 32 32 H 1.08001 * 119.99852 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47020 * 269.97621 * 5 4 3 34 34 H 1.09001 * 109.46865 * 29.98107 * 5 4 3 35 35 H 1.08999 * 109.46932 * 149.98153 * 5 4 3 36 36 H 1.07994 * 120.00232 * 179.97438 * 6 4 3 37 37 H 0.96997 * 126.68439 * 298.55107 * 10 8 7 38 38 H 1.09006 * 109.47064 * 152.03166 * 14 13 11 39 39 H 1.09000 * 109.47621 * 32.03305 * 14 13 11 40 40 H 0.96993 * 120.00376 * 180.02562 * 19 18 16 41 41 H 1.08996 * 117.50153 * 214.99925 * 24 15 14 42 42 H 1.09002 * 117.49698 * 0.02562 * 24 15 14 43 43 H 1.09008 * 117.49832 * 359.97438 * 25 15 14 44 44 H 1.09001 * 117.50422 * 144.96936 * 25 15 14 45 45 H 1.07993 * 120.00153 * 179.72571 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2717 -0.0001 -0.0002 7 6 3.5805 -1.1972 0.0001 8 6 4.3340 -2.5023 -0.0001 9 1 5.3400 -2.3631 0.3955 10 7 3.6087 -3.5233 0.7756 11 6 3.3076 -4.5157 -0.0813 12 8 2.7016 -5.5207 0.2349 13 7 3.7530 -4.2744 -1.3196 14 6 3.5691 -5.1850 -2.4523 15 6 4.7257 -6.1857 -2.4951 16 6 6.1044 -5.5826 -2.5753 17 1 6.6798 -5.4291 -1.6744 18 6 6.6289 -5.2216 -3.7982 19 7 7.8897 -4.8593 -3.8919 20 14 5.5488 -5.2473 -5.3221 21 1 4.9682 -3.8980 -5.5399 22 1 6.3658 -5.6309 -6.5014 23 1 4.4541 -6.2333 -5.1364 24 6 4.5673 -7.4830 -1.6996 25 6 4.4893 -7.5078 -3.2281 26 6 4.3866 -3.0875 -1.3975 27 8 4.8929 -2.5907 -2.3808 28 6 2.1981 -1.1972 -0.0052 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1324 0.0004 33 1 4.5157 2.8163 -1.0289 34 1 3.7450 3.2620 0.5125 35 1 5.2865 2.3719 0.5127 36 1 5.3517 -0.0001 -0.0011 37 1 3.3886 -3.4859 1.7195 38 1 3.5498 -4.6122 -3.3796 39 1 2.6278 -5.7224 -2.3375 40 1 8.2587 -4.6049 -4.7521 41 1 5.4602 -7.9002 -1.2342 42 1 3.6389 -7.6237 -1.1461 43 1 3.5096 -7.6648 -3.6795 44 1 5.3308 -7.9411 -3.7687 45 1 1.6582 -2.1325 -0.0094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348764644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:28 Heat of formation + Delta-G solvation = -12.401586 kcal Electronic energy + Delta-G solvation = -28738.309931 eV Core-core repulsion = 24914.511865 eV Total energy + Delta-G solvation = -3823.798066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.45809 -40.50568 -39.50311 -38.78448 -37.19706 -35.48913 -34.43505 -34.20811 -33.02229 -29.25913 -28.56200 -27.84046 -27.59438 -27.25894 -24.04849 -23.31405 -22.52515 -21.71600 -21.55262 -20.75805 -19.06003 -18.36888 -18.03612 -17.67017 -17.08768 -16.70511 -16.63461 -16.39324 -16.22501 -15.70168 -15.27131 -15.09863 -14.87694 -14.82806 -14.71037 -14.40860 -14.06010 -14.00391 -13.87851 -13.66277 -13.32220 -13.06221 -12.76630 -12.75752 -12.64497 -12.31475 -12.22521 -12.19511 -11.98006 -11.89736 -11.64352 -11.23208 -10.95031 -10.74526 -10.62476 -10.35511 -10.33273 -9.65054 -9.51514 -8.28292 -6.33018 0.18329 0.38332 0.72576 1.31770 1.36398 1.39793 1.47258 2.06320 2.15883 2.39268 2.63032 3.10387 3.17394 3.22738 3.38942 3.72732 3.89367 3.93911 4.08859 4.12699 4.20682 4.33497 4.37741 4.42512 4.45516 4.49865 4.56408 4.67129 4.68281 4.80580 4.83065 4.86853 4.89469 4.93315 5.04338 5.07029 5.19341 5.28323 5.33896 5.45498 5.49337 5.56956 5.64001 5.70004 5.84468 6.03225 6.15254 6.27345 6.53246 6.71092 7.16938 7.37223 8.87420 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.004374 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.210871 B = 6400.450903 C = 7312.002699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.115 4.115 4 C -0.086 4.086 5 C -0.113 4.113 6 C -0.113 4.113 7 C -0.096 4.096 8 C 0.149 3.851 9 H 0.146 0.854 10 N -0.701 5.701 11 C 0.706 3.294 12 O -0.570 6.570 13 N -0.561 5.561 14 C 0.155 3.845 15 C -0.050 4.050 16 C -0.474 4.474 17 H 0.021 0.979 18 C 0.041 3.959 19 N -0.943 5.943 20 Si 0.909 3.091 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.203 1.203 24 C -0.161 4.161 25 C -0.165 4.165 26 C 0.524 3.476 27 O -0.486 6.486 28 C -0.118 4.118 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.132 0.868 37 H 0.452 0.548 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.262 0.738 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.885 13.175 10.223 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.133 4.133 4 C -0.086 4.086 5 C -0.170 4.170 6 C -0.132 4.132 7 C -0.097 4.097 8 C 0.040 3.960 9 H 0.163 0.837 10 N -0.366 5.366 11 C 0.407 3.593 12 O -0.446 6.446 13 N -0.305 5.305 14 C 0.034 3.966 15 C -0.052 4.052 16 C -0.511 4.511 17 H 0.039 0.961 18 C -0.158 4.158 19 N -0.582 5.582 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.220 1.220 23 H -0.125 1.125 24 C -0.198 4.198 25 C -0.202 4.202 26 C 0.311 3.689 27 O -0.356 6.356 28 C -0.136 4.136 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.166 0.834 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.150 0.850 37 H 0.299 0.701 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.799 12.891 9.650 21.870 hybrid contribution 0.589 -0.150 -0.564 0.829 sum -14.210 12.741 9.086 21.138 Atomic orbital electron populations 1.20833 0.89222 1.03884 1.02947 1.20168 0.97517 0.92438 0.98671 1.21301 0.93516 0.98382 1.00061 1.20191 0.94324 0.95689 0.98361 1.20847 1.00245 0.92852 1.03010 1.21061 1.00610 0.91269 1.00259 1.19358 0.94020 0.92129 1.04213 1.20786 0.99158 0.87715 0.88381 0.83695 1.45293 1.60509 1.18497 1.12322 1.15881 0.79020 0.83632 0.80795 1.90924 1.45851 1.28681 1.79185 1.46147 1.52482 1.20489 1.11378 1.21334 0.98551 0.90758 0.85958 1.19649 0.93819 0.87157 1.04546 1.20043 0.97729 1.40907 0.92438 0.96053 1.25579 0.95145 0.93336 1.01742 1.70033 1.14751 1.47382 1.26039 0.86370 0.81686 0.79695 0.78909 1.21425 1.21978 1.12500 1.22818 1.01429 1.01891 0.93677 1.23010 1.02001 1.00951 0.94283 1.21065 0.76044 0.80833 0.90977 1.90787 1.41806 1.65315 1.37677 1.20883 0.92957 0.98534 1.01274 0.90842 0.91239 0.89534 0.83377 0.90857 0.89650 0.90786 0.84999 0.70067 0.91134 0.88354 0.92899 0.91118 0.88641 0.87634 0.90282 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.01 71.24 0.71 -0.88 16 2 C -0.09 -1.73 5.88 -19.86 -0.12 -1.85 16 3 C -0.11 -2.05 9.36 22.27 0.21 -1.84 16 4 C -0.09 -1.67 5.88 -19.87 -0.12 -1.78 16 5 C -0.11 -1.56 10.01 71.24 0.71 -0.85 16 6 C -0.11 -2.65 9.35 22.27 0.21 -2.44 16 7 C -0.10 -2.45 5.07 -19.87 -0.10 -2.55 16 8 C 0.15 4.32 3.89 43.62 0.17 4.48 16 9 H 0.15 3.79 8.07 -2.39 -0.02 3.77 16 10 N -0.70 -18.64 5.37 -463.19 -2.49 -21.13 16 11 C 0.71 24.91 8.62 179.44 1.55 26.46 16 12 O -0.57 -22.25 17.36 -3.85 -0.07 -22.32 16 13 N -0.56 -22.27 2.44 -773.11 -1.89 -24.16 16 14 C 0.16 6.45 5.38 86.38 0.46 6.91 16 15 C -0.05 -2.31 1.08 -52.93 -0.06 -2.36 16 16 C -0.47 -26.98 8.62 25.60 0.22 -26.76 16 17 H 0.02 1.38 8.06 -2.91 -0.02 1.36 16 18 C 0.04 2.39 5.46 84.65 0.46 2.85 16 19 N -0.94 -60.15 13.96 21.45 0.30 -59.85 16 20 Si 0.91 44.68 25.48 68.60 1.75 46.42 16 21 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 22 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 23 H -0.20 -8.55 5.21 99.48 0.52 -8.03 16 24 C -0.16 -6.69 9.93 30.62 0.30 -6.38 16 25 C -0.16 -6.65 7.09 30.62 0.22 -6.43 16 26 C 0.52 21.11 7.07 87.94 0.62 21.73 16 27 O -0.49 -23.78 17.73 -2.90 -0.05 -23.83 16 28 C -0.12 -2.81 9.01 22.27 0.20 -2.61 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 31 H 0.09 0.87 8.09 -2.39 -0.02 0.85 16 32 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 35 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 36 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.45 8.85 8.96 -92.71 -0.83 8.02 16 38 H 0.07 3.05 6.21 -2.38 -0.01 3.03 16 39 H 0.10 3.55 7.87 -2.39 -0.02 3.53 16 40 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 41 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.10 3.69 7.99 -2.39 -0.02 3.67 16 43 H 0.11 3.58 8.12 -2.38 -0.02 3.56 16 44 H 0.08 3.35 7.88 -2.39 -0.02 3.33 16 45 H 0.12 2.81 7.59 -2.91 -0.02 2.78 16 Total: -1.00 -76.56 375.43 3.21 -73.36 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.01 Total: 25.81 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 5.66 Total: 5.69 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -4.07 Total: -105.13 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -0.12 Total: -46.15 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.75 Total: 46.42 kcal Total: -76.56 3.21 -73.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348764644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.956 kcal (2) G-P(sol) polarization free energy of solvation -76.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds