Wall clock time and date at job start Tue Mar 31 2020 15:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52990 * 110.53658 * 2 1 4 4 C 1.53000 * 117.49931 * 129.99911 * 3 2 1 5 5 C 1.52992 * 60.00261 * 252.50981 * 4 3 2 6 6 N 1.47309 * 110.59707 * 122.83445 * 2 1 3 7 7 C 1.34532 * 106.61844 * 118.67887 * 6 2 1 8 8 O 1.21539 * 123.76614 * 179.97438 * 7 6 2 9 9 N 1.33786 * 112.45593 * 359.97438 * 7 6 2 10 10 C 1.46504 * 124.17188 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.46654 * 180.51790 * 10 9 7 12 12 C 1.52995 * 109.47295 * 60.52579 * 10 9 7 13 13 C 1.50708 * 109.47553 * 64.99176 * 12 10 9 14 14 H 1.08001 * 119.99542 * 0.02562 * 13 12 10 15 15 C 1.37873 * 120.00156 * 180.02562 * 13 12 10 16 16 N 1.31517 * 119.99620 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 120.00212 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47473 * 89.99612 * 17 15 13 19 19 H 1.48505 * 109.47243 * 209.99972 * 17 15 13 20 20 H 1.48508 * 109.47352 * 329.99778 * 17 15 13 21 21 C 1.50700 * 109.47667 * 300.52107 * 10 9 7 22 22 C 1.38238 * 119.99421 * 328.23736 * 21 10 9 23 23 C 1.38237 * 119.99202 * 179.80716 * 22 21 10 24 24 C 1.38231 * 120.00482 * 0.40223 * 23 22 21 25 25 C 1.38236 * 119.99905 * 359.84597 * 24 23 22 26 26 C 1.38231 * 120.00170 * 148.50911 * 21 10 9 27 27 C 1.34761 * 111.65032 * 0.23278 * 9 7 6 28 28 O 1.21231 * 127.16302 * 179.73191 * 27 9 7 29 29 H 1.09008 * 109.46785 * 297.87010 * 1 2 3 30 30 H 1.09000 * 109.46858 * 57.86149 * 1 2 3 31 31 H 1.08993 * 109.47346 * 177.87118 * 1 2 3 32 32 H 1.09003 * 115.55349 * 275.71058 * 3 2 1 33 33 H 1.08997 * 117.49698 * 0.02562 * 4 3 2 34 34 H 1.08996 * 117.50017 * 145.01734 * 4 3 2 35 35 H 1.08997 * 117.50364 * 252.50837 * 5 4 3 36 36 H 1.09001 * 117.52047 * 107.48199 * 5 4 3 37 37 H 0.97000 * 126.69013 * 298.63563 * 6 2 1 38 38 H 1.09002 * 109.47008 * 304.99854 * 12 10 9 39 39 H 1.08996 * 109.47816 * 184.99693 * 12 10 9 40 40 H 0.97005 * 119.99473 * 180.02562 * 16 15 13 41 41 H 1.07992 * 120.00344 * 359.97438 * 22 21 10 42 42 H 1.08004 * 119.99337 * 180.22854 * 23 22 21 43 43 H 1.07995 * 120.00339 * 179.83520 * 24 23 22 44 44 H 1.07997 * 120.00221 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.00031 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 6 3.1315 1.7882 1.0396 5 6 1.7059 2.3223 1.1913 6 7 2.0483 -0.7477 1.1586 7 6 2.7627 -1.7752 0.6652 8 8 3.3327 -2.5958 1.3573 9 7 2.7757 -1.7929 -0.6725 10 6 3.4758 -2.7986 -1.4755 11 1 3.3357 -2.5800 -2.5342 12 6 2.9107 -4.1853 -1.1619 13 6 1.4715 -4.2531 -1.6042 14 1 1.0067 -3.3931 -2.0634 15 6 0.7484 -5.4128 -1.4226 16 7 -0.5073 -5.4720 -1.8090 17 14 1.5521 -6.8999 -0.6277 18 1 1.3561 -6.8415 0.8431 19 1 0.9341 -8.1406 -1.1607 20 1 3.0053 -6.8999 -0.9337 21 6 4.9463 -2.7693 -1.1468 22 6 5.5488 -1.5806 -0.7797 23 6 6.8968 -1.5546 -0.4744 24 6 7.6439 -2.7155 -0.5441 25 6 7.0424 -3.9032 -0.9161 26 6 5.6936 -3.9300 -1.2178 27 6 2.0700 -0.7681 -1.1901 28 8 1.9011 -0.5140 -2.3634 29 1 -0.3633 0.4804 0.9086 30 1 -0.3633 0.5467 -0.8702 31 1 -0.3633 -1.0269 -0.0382 32 1 2.1401 1.9073 -0.9785 33 1 3.4499 1.0013 1.7233 34 1 3.9057 2.4967 0.7451 35 1 1.5420 3.3822 0.9967 36 1 1.0857 1.8870 1.9749 37 1 1.9032 -0.5393 2.0948 38 1 2.9699 -4.3677 -0.0889 39 1 3.4895 -4.9419 -1.6915 40 1 -1.0162 -6.2879 -1.6809 41 1 4.9660 -0.6729 -0.7289 42 1 7.3668 -0.6265 -0.1840 43 1 8.6975 -2.6947 -0.3081 44 1 7.6261 -4.8102 -0.9710 45 1 5.2236 -4.8580 -1.5084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348942405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:02 Heat of formation + Delta-G solvation = 18.600367 kcal Electronic energy + Delta-G solvation = -29615.127785 eV Core-core repulsion = 25792.674064 eV Total energy + Delta-G solvation = -3822.453721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.31631 -39.14024 -38.11966 -37.75038 -35.40812 -34.97237 -32.75261 -31.59830 -30.61788 -30.30531 -29.19686 -25.87128 -24.84675 -22.96924 -22.73738 -22.46513 -21.76329 -21.28072 -20.09622 -19.21321 -17.64596 -17.39859 -16.66554 -16.26323 -15.77317 -15.47798 -15.34254 -14.85425 -14.69515 -14.43370 -14.17597 -14.05044 -13.67031 -13.46141 -13.17013 -12.97156 -12.81136 -12.59611 -12.39407 -12.30376 -11.99067 -11.77208 -11.56950 -11.43966 -11.00123 -10.85115 -10.75919 -10.60318 -10.44580 -10.43676 -9.99740 -9.85370 -9.60342 -9.28987 -9.19021 -9.03242 -8.62987 -8.55913 -8.33996 -6.07625 -4.06576 1.61505 1.68903 2.07544 2.67565 3.27767 3.31730 3.38307 3.41755 3.55857 3.68359 4.09393 4.19757 4.34672 4.43250 4.66596 4.78188 5.03334 5.12848 5.13518 5.15199 5.22062 5.26114 5.38353 5.42098 5.53355 5.61064 5.67973 5.74718 5.77528 5.82080 5.89009 5.93156 6.04051 6.14727 6.15800 6.20912 6.27509 6.37086 6.69858 6.74762 6.92136 7.03117 7.09608 7.24539 7.29857 7.62848 7.69411 7.85806 8.44698 8.62306 8.94787 9.53688 11.05082 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009372 B = 0.006735 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.015727 B = 4156.328577 C = 6252.319812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.153 3.847 3 C -0.156 4.156 4 C -0.172 4.172 5 C -0.165 4.165 6 N -0.729 5.729 7 C 0.711 3.289 8 O -0.532 6.532 9 N -0.547 5.547 10 C 0.199 3.801 11 H 0.112 0.888 12 C -0.027 4.027 13 C -0.521 4.521 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.898 5.898 17 Si 0.876 3.124 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.264 1.264 21 C -0.077 4.077 22 C -0.110 4.110 23 C -0.121 4.121 24 C -0.129 4.129 25 C -0.120 4.120 26 C -0.102 4.102 27 C 0.539 3.461 28 O -0.469 6.469 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.431 0.569 38 H 0.040 0.960 39 H 0.038 0.962 40 H 0.263 0.737 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.110 14.230 5.760 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.062 3.938 3 C -0.176 4.176 4 C -0.209 4.209 5 C -0.202 4.202 6 N -0.394 5.394 7 C 0.412 3.588 8 O -0.405 6.405 9 N -0.290 5.290 10 C 0.098 3.902 11 H 0.130 0.870 12 C -0.064 4.064 13 C -0.559 4.559 14 H 0.090 0.910 15 C -0.129 4.129 16 N -0.537 5.537 17 Si 0.703 3.297 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.077 4.077 22 C -0.128 4.128 23 C -0.139 4.139 24 C -0.147 4.147 25 C -0.138 4.138 26 C -0.120 4.120 27 C 0.325 3.675 28 O -0.339 6.339 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.141 0.859 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.275 0.725 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.215 13.696 5.384 17.364 hybrid contribution 0.062 -0.760 0.866 1.154 sum 9.277 12.937 6.251 17.102 Atomic orbital electron populations 1.21933 0.90032 1.04552 1.03595 1.20817 0.96880 0.91064 0.85004 1.22398 1.05090 0.93327 0.96737 1.23053 0.92376 1.03483 1.02015 1.22942 0.98407 0.99367 0.99490 1.45645 1.55695 1.29601 1.08443 1.15746 0.79388 0.81662 0.81984 1.90969 1.48086 1.40524 1.60907 1.46181 1.48176 1.27334 1.07339 1.20234 0.85531 0.89730 0.94657 0.86992 1.20105 0.97586 0.89837 0.98880 1.20965 0.93973 1.00423 1.40498 0.90990 1.24925 0.94632 0.98461 0.94862 1.69911 1.08365 1.27985 1.47405 0.86837 0.80280 0.82491 0.80083 1.20207 1.21352 1.18902 1.20210 0.95435 0.93661 0.98434 1.20841 0.94791 0.97210 0.99968 1.20974 0.94029 0.98043 1.00872 1.21035 0.99422 0.93070 1.01140 1.21099 0.94882 0.97824 0.99995 1.21204 0.93768 0.98088 0.98975 1.20469 0.77173 0.80392 0.89503 1.90749 1.56895 1.69731 1.16539 0.90831 0.90031 0.90389 0.85887 0.88098 0.88495 0.88262 0.88532 0.72495 0.94209 0.94458 0.92705 0.87286 0.86661 0.86612 0.86248 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.82 37.16 0.33 -1.50 16 2 C 0.15 2.10 1.15 -132.09 -0.15 1.95 16 3 C -0.16 -1.66 5.20 -90.62 -0.47 -2.13 16 4 C -0.17 -1.57 9.87 -26.74 -0.26 -1.84 16 5 C -0.17 -1.30 9.79 -26.73 -0.26 -1.56 16 6 N -0.73 -10.28 4.34 -52.94 -0.23 -10.51 16 7 C 0.71 13.43 7.43 -88.02 -0.65 12.78 16 8 O -0.53 -11.71 15.71 5.33 0.08 -11.62 16 9 N -0.55 -10.67 1.35 -114.83 -0.15 -10.83 16 10 C 0.20 4.16 2.51 -69.08 -0.17 3.98 16 11 H 0.11 2.39 7.64 -51.92 -0.40 2.00 16 12 C -0.03 -0.64 2.90 -27.88 -0.08 -0.72 16 13 C -0.52 -14.63 9.39 -34.44 -0.32 -14.96 16 14 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 15 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 16 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 17 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 21 C -0.08 -1.42 4.76 -104.62 -0.50 -1.91 16 22 C -0.11 -1.81 8.83 -39.58 -0.35 -2.16 16 23 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 24 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 25 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 26 C -0.10 -1.78 9.14 -39.59 -0.36 -2.14 16 27 C 0.54 9.82 7.00 -10.55 -0.07 9.75 16 28 O -0.47 -9.58 17.51 5.60 0.10 -9.48 16 29 H 0.07 0.72 7.56 -51.92 -0.39 0.32 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.10 1.00 6.86 -51.93 -0.36 0.64 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.69 7.78 -51.93 -0.40 0.28 16 37 H 0.43 4.85 8.75 -40.82 -0.36 4.49 16 38 H 0.04 1.03 6.02 -51.93 -0.31 0.71 16 39 H 0.04 0.87 5.28 -51.93 -0.27 0.60 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.11 1.74 7.39 -52.49 -0.39 1.35 16 42 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 43 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 45 H 0.13 2.32 6.01 -52.49 -0.32 2.00 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -33.97 367.96 -9.35 -43.32 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.16 Total: 7.75 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -4.63 Total: -4.85 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.39 Total: -48.01 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.18 Total: -21.10 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.97 -9.35 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348942405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.916 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds