Wall clock time and date at job start Tue Mar 31 2020 15:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52990 * 110.53658 * 2 1 4 4 C 1.53000 * 117.49931 * 129.99911 * 3 2 1 5 5 C 1.52992 * 60.00261 * 252.50981 * 4 3 2 6 6 N 1.47309 * 110.59707 * 122.83445 * 2 1 3 7 7 C 1.34532 * 106.61844 * 118.67887 * 6 2 1 8 8 O 1.21539 * 123.76614 * 179.97438 * 7 6 2 9 9 N 1.33786 * 112.45593 * 359.97438 * 7 6 2 10 10 C 1.46504 * 124.17188 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.46654 * 180.51790 * 10 9 7 12 12 C 1.52995 * 109.47295 * 60.52579 * 10 9 7 13 13 C 1.50708 * 109.47553 * 64.99176 * 12 10 9 14 14 H 1.08001 * 119.99542 * 0.02562 * 13 12 10 15 15 C 1.37873 * 120.00156 * 180.02562 * 13 12 10 16 16 N 1.31517 * 119.99620 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 120.00212 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47473 * 89.99612 * 17 15 13 19 19 H 1.48505 * 109.47243 * 209.99972 * 17 15 13 20 20 H 1.48508 * 109.47352 * 329.99778 * 17 15 13 21 21 C 1.50700 * 109.47667 * 300.52107 * 10 9 7 22 22 C 1.38238 * 119.99421 * 328.23736 * 21 10 9 23 23 C 1.38237 * 119.99202 * 179.80716 * 22 21 10 24 24 C 1.38231 * 120.00482 * 0.40223 * 23 22 21 25 25 C 1.38236 * 119.99905 * 359.84597 * 24 23 22 26 26 C 1.38231 * 120.00170 * 148.50911 * 21 10 9 27 27 C 1.34761 * 111.65032 * 0.23278 * 9 7 6 28 28 O 1.21231 * 127.16302 * 179.73191 * 27 9 7 29 29 H 1.09008 * 109.46785 * 297.87010 * 1 2 3 30 30 H 1.09000 * 109.46858 * 57.86149 * 1 2 3 31 31 H 1.08993 * 109.47346 * 177.87118 * 1 2 3 32 32 H 1.09003 * 115.55349 * 275.71058 * 3 2 1 33 33 H 1.08997 * 117.49698 * 0.02562 * 4 3 2 34 34 H 1.08996 * 117.50017 * 145.01734 * 4 3 2 35 35 H 1.08997 * 117.50364 * 252.50837 * 5 4 3 36 36 H 1.09001 * 117.52047 * 107.48199 * 5 4 3 37 37 H 0.97000 * 126.69013 * 298.63563 * 6 2 1 38 38 H 1.09002 * 109.47008 * 304.99854 * 12 10 9 39 39 H 1.08996 * 109.47816 * 184.99693 * 12 10 9 40 40 H 0.97005 * 119.99473 * 180.02562 * 16 15 13 41 41 H 1.07992 * 120.00344 * 359.97438 * 22 21 10 42 42 H 1.08004 * 119.99337 * 180.22854 * 23 22 21 43 43 H 1.07995 * 120.00339 * 179.83520 * 24 23 22 44 44 H 1.07997 * 120.00221 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.00031 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 6 3.1315 1.7882 1.0396 5 6 1.7059 2.3223 1.1913 6 7 2.0483 -0.7477 1.1586 7 6 2.7627 -1.7752 0.6652 8 8 3.3327 -2.5958 1.3573 9 7 2.7757 -1.7929 -0.6725 10 6 3.4758 -2.7986 -1.4755 11 1 3.3357 -2.5800 -2.5342 12 6 2.9107 -4.1853 -1.1619 13 6 1.4715 -4.2531 -1.6042 14 1 1.0067 -3.3931 -2.0634 15 6 0.7484 -5.4128 -1.4226 16 7 -0.5073 -5.4720 -1.8090 17 14 1.5521 -6.8999 -0.6277 18 1 1.3561 -6.8415 0.8431 19 1 0.9341 -8.1406 -1.1607 20 1 3.0053 -6.8999 -0.9337 21 6 4.9463 -2.7693 -1.1468 22 6 5.5488 -1.5806 -0.7797 23 6 6.8968 -1.5546 -0.4744 24 6 7.6439 -2.7155 -0.5441 25 6 7.0424 -3.9032 -0.9161 26 6 5.6936 -3.9300 -1.2178 27 6 2.0700 -0.7681 -1.1901 28 8 1.9011 -0.5140 -2.3634 29 1 -0.3633 0.4804 0.9086 30 1 -0.3633 0.5467 -0.8702 31 1 -0.3633 -1.0269 -0.0382 32 1 2.1401 1.9073 -0.9785 33 1 3.4499 1.0013 1.7233 34 1 3.9057 2.4967 0.7451 35 1 1.5420 3.3822 0.9967 36 1 1.0857 1.8870 1.9749 37 1 1.9032 -0.5393 2.0948 38 1 2.9699 -4.3677 -0.0889 39 1 3.4895 -4.9419 -1.6915 40 1 -1.0162 -6.2879 -1.6809 41 1 4.9660 -0.6729 -0.7289 42 1 7.3668 -0.6265 -0.1840 43 1 8.6975 -2.6947 -0.3081 44 1 7.6261 -4.8102 -0.9710 45 1 5.2236 -4.8580 -1.5084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348942405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:01 Heat of formation + Delta-G solvation = -1.906675 kcal Electronic energy + Delta-G solvation = -29616.017037 eV Core-core repulsion = 25792.674064 eV Total energy + Delta-G solvation = -3823.342973 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.71900 -40.38144 -39.62165 -38.83662 -36.98787 -36.26649 -34.76154 -33.09019 -31.82044 -31.50897 -30.89988 -27.48961 -26.11634 -24.52344 -24.08014 -23.14403 -23.10193 -22.67510 -21.30900 -20.66191 -19.26491 -19.05759 -18.11931 -17.64903 -17.08861 -16.80346 -16.72155 -16.34184 -16.04888 -15.94808 -15.53268 -15.34303 -15.13850 -14.94268 -14.57946 -14.39539 -14.30822 -13.92641 -13.72135 -13.59261 -13.48855 -13.16801 -12.70251 -12.67975 -12.46364 -12.33156 -12.11512 -12.01298 -11.83903 -11.71060 -11.59192 -11.40912 -11.25574 -10.86319 -10.82230 -10.68844 -10.43958 -9.82566 -9.62218 -8.35338 -6.39040 0.38712 0.49023 0.62186 1.27018 1.28870 1.31160 1.41334 2.06851 2.10701 2.28941 2.79231 2.88134 2.95468 3.00502 3.38601 3.64183 3.78103 3.92526 4.00636 4.06238 4.11059 4.19308 4.25605 4.32386 4.39307 4.44763 4.49032 4.62106 4.62660 4.69485 4.74168 4.82907 4.98278 5.01149 5.09292 5.11334 5.15451 5.17517 5.28258 5.28773 5.47599 5.56928 5.61251 5.68198 5.84912 6.10657 6.15074 6.17009 6.41054 6.64356 7.18883 7.24098 8.80754 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009372 B = 0.006735 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.015727 B = 4156.328577 C = 6252.319812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.165 3.835 3 C -0.175 4.175 4 C -0.171 4.171 5 C -0.136 4.136 6 N -0.705 5.705 7 C 0.706 3.294 8 O -0.567 6.567 9 N -0.555 5.555 10 C 0.201 3.799 11 H 0.090 0.910 12 C -0.014 4.014 13 C -0.522 4.522 14 H 0.030 0.970 15 C 0.017 3.983 16 N -0.941 5.941 17 Si 0.938 3.062 18 H -0.277 1.277 19 H -0.277 1.277 20 H -0.245 1.245 21 C -0.100 4.100 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.126 4.126 27 C 0.523 3.477 28 O -0.503 6.503 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.121 0.879 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.448 0.552 38 H 0.026 0.974 39 H 0.044 0.956 40 H 0.267 0.733 41 H 0.106 0.894 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.148 0.852 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.554 15.717 7.974 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.075 3.925 3 C -0.194 4.194 4 C -0.208 4.208 5 C -0.172 4.172 6 N -0.371 5.371 7 C 0.407 3.593 8 O -0.443 6.443 9 N -0.298 5.298 10 C 0.100 3.900 11 H 0.108 0.892 12 C -0.051 4.051 13 C -0.560 4.560 14 H 0.048 0.952 15 C -0.181 4.181 16 N -0.581 5.581 17 Si 0.762 3.238 18 H -0.202 1.202 19 H -0.202 1.202 20 H -0.168 1.168 21 C -0.101 4.101 22 C -0.139 4.139 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.144 4.144 27 C 0.312 3.688 28 O -0.375 6.375 29 H 0.133 0.867 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.139 0.861 33 H 0.111 0.889 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.128 0.872 37 H 0.295 0.705 38 H 0.044 0.956 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.124 0.876 42 H 0.166 0.834 43 H 0.174 0.826 44 H 0.166 0.834 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.649 15.229 7.616 20.631 hybrid contribution -0.702 -1.139 0.123 1.343 sum 10.948 14.090 7.739 19.449 Atomic orbital electron populations 1.21964 0.89112 1.02679 1.06021 1.20864 0.97244 0.92214 0.82176 1.22272 1.07757 0.91339 0.98060 1.23118 0.93419 1.03551 1.00744 1.23115 0.97121 0.99896 0.97117 1.45505 1.54068 1.28071 1.09436 1.15890 0.79663 0.82218 0.81541 1.90927 1.49835 1.42086 1.61408 1.46273 1.48314 1.27364 1.07864 1.19914 0.87878 0.88334 0.93921 0.89208 1.19894 0.95140 0.92516 0.97577 1.21136 0.96023 0.99049 1.39756 0.95165 1.25793 0.95136 1.01669 0.95501 1.70046 1.09961 1.29105 1.49022 0.85834 0.80453 0.78759 0.78743 1.20234 1.20233 1.16797 1.20040 0.93752 0.95323 1.00995 1.20907 0.96181 0.96272 1.00494 1.21375 0.92849 0.99901 0.99380 1.21517 1.01223 0.92005 0.98946 1.21442 0.93690 0.99727 0.98766 1.21258 0.95372 0.97260 1.00524 1.21387 0.76531 0.80431 0.90483 1.90706 1.57967 1.70597 1.18255 0.86714 0.89430 0.94195 0.86136 0.88855 0.87249 0.86106 0.87154 0.70514 0.95591 0.93766 0.92418 0.87604 0.83360 0.82612 0.83416 0.86278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.82 71.98 0.64 -2.91 16 2 C 0.17 4.53 1.15 2.99 0.00 4.54 16 3 C -0.17 -3.42 5.20 -10.80 -0.06 -3.48 16 4 C -0.17 -2.67 9.87 30.59 0.30 -2.37 16 5 C -0.14 -1.61 9.79 30.59 0.30 -1.31 16 6 N -0.70 -19.67 4.34 -439.81 -1.91 -21.58 16 7 C 0.71 27.40 7.43 179.44 1.33 28.73 16 8 O -0.57 -25.47 15.71 -3.84 -0.06 -25.53 16 9 N -0.56 -22.90 1.35 -754.47 -1.02 -23.92 16 10 C 0.20 8.95 2.51 44.24 0.11 9.06 16 11 H 0.09 4.24 7.64 -2.38 -0.02 4.22 16 12 C -0.01 -0.69 2.90 29.85 0.09 -0.60 16 13 C -0.52 -31.09 9.39 25.60 0.24 -30.85 16 14 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 15 C 0.02 1.01 5.47 84.65 0.46 1.48 16 16 N -0.94 -59.90 13.96 21.45 0.30 -59.60 16 17 Si 0.94 46.32 27.47 68.60 1.88 48.21 16 18 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.24 -11.19 6.54 99.48 0.65 -10.53 16 21 C -0.10 -3.81 4.76 -19.87 -0.09 -3.91 16 22 C -0.12 -3.92 8.83 22.27 0.20 -3.72 16 23 C -0.12 -3.00 10.05 22.27 0.22 -2.77 16 24 C -0.12 -2.79 10.05 22.27 0.22 -2.56 16 25 C -0.12 -3.20 10.05 22.27 0.22 -2.98 16 26 C -0.13 -4.39 9.14 22.27 0.20 -4.19 16 27 C 0.52 20.24 7.00 87.94 0.62 20.86 16 28 O -0.50 -22.13 17.51 -2.88 -0.05 -22.18 16 29 H 0.11 1.94 7.56 -2.38 -0.02 1.92 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.09 1.63 6.86 -2.39 -0.02 1.61 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.11 1.05 7.78 -2.39 -0.02 1.04 16 37 H 0.45 9.36 8.75 -92.71 -0.81 8.55 16 38 H 0.03 1.38 6.02 -2.39 -0.01 1.37 16 39 H 0.04 2.15 5.28 -2.39 -0.01 2.14 16 40 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 41 H 0.11 3.41 7.39 -2.91 -0.02 3.39 16 42 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 43 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 44 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 45 H 0.12 4.31 6.01 -2.91 -0.02 4.29 16 Total: -1.00 -79.67 367.96 4.31 -75.36 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.15 Total: 26.22 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 5.01 Total: 3.01 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -2.63 Total: -105.09 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -0.11 Total: -47.71 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.88 Total: 48.21 kcal Total: -79.67 4.31 -75.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348942405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.457 kcal (2) G-P(sol) polarization free energy of solvation -79.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds